Clone Sequence Records
BS10638.3prime Sequence
821 bp (820 high quality bases) assembled on 2006-04-19
> BS10638.3prime
ATGGTCTAGAAAGCTTTCAGGAGTGCTTGTCAGTCAGTTCACCCCAGCGG
GACTCGAAGAACTTGCGCATGCCGTGGCCTGCCTTGCCAACGGGCGAATC
GTCCTCGTTAAACATCTCGCAATTATCGAAGATCTGACGCACGTCCACGC
AGAAGTCCTCACGGGTTTTGTAGCTCAAATCTTGCAATTTCTTTTTGATT
GTGGACAAGTCCATGGGAGTTTTGATTATTTTTCGATATGTGGGAAACTG
CTTGGTGTTTACTGGCAAAAGAAATGGCCACGAGTCCTCATGAAGCTCCA
TTTCCCCCAATAGCGTCTTGCAGACAGCCAGCTCCTTCATGAGCTTCTTG
GTGGCGTGCTTCTCCTTCTTCTCCTGCTTCAGCTTCTCCTTGGCTTCCTG
AATGGCATGTATGTTGATGGGCGGTGGCGACATTTGGTTAGTGGCCGTTC
CGACTCCAATGGCTGGTGGCGAGGGCATGGTCATCAGCTGCGCATGCTGT
TGTTGGGGCGGTGACTGGCAGGCGTTTACATGGAGGGCGGTGGCTGTGGG
CGAGGCCTGCATTAGCAGCGGTGTCGGCGGTGGTGGTGGCGGAGTGGGTG
CTGGCGTCGGTGTGGGCGTTCGGGTGCGGGTGGGCGTGACAGCCCGTGGC
GACATGGCGACCACGTTGGCAAACGGCATCGCTGGCTGCACCGGCGCTTG
GTTAATCAATCCGGCTGAGAAGTTGCCAGCCGCAACTGGCGTATAAACTG
GATAGACGCCGGGCATCACATTGGCGCCACCCGGCACATCTTCCAGCAGA
GCCGCAGTGCCATTATTTGAC
BS10638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10897-PA | 9243 | tou-RA | 8439..9243 | 821..17 | 4025 | 100 | Minus |
CG10897-PC | 2052 | tou-RC | 1248..2052 | 821..17 | 4025 | 100 | Minus |
CG10897-PD | 1383 | tou-RD | 579..1383 | 821..17 | 4025 | 100 | Minus |
CG10897-PB | 750 | tou-RB | 1..750 | 766..17 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tou-RG | 10721 | CG10897-RG | 8970..9774 | 821..17 | 4025 | 100 | Minus |
tou-RF | 11743 | CG10897-RF | 8597..9401 | 821..17 | 4025 | 100 | Minus |
tou-RE | 10866 | CG10897-RE | 9115..9919 | 821..17 | 4025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11580235..11580760 | 296..821 | 2630 | 100 | Plus |
2R | 25286936 | 2R | 11579827..11579985 | 17..175 | 795 | 100 | Plus |
2R | 25286936 | 2R | 11580049..11580172 | 174..297 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:09:15 has no hits.
BS10638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:37 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-PA | 8439..9243 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:32 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10897-PD | 579..1383 | 17..821 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:31 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RE | 9115..9923 | 12..821 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:33 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RE | 9115..9923 | 12..821 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:33 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11580049..11580170 | 174..295 | 100 | <- | Plus |
2R | 11579823..11579983 | 12..173 | 98 | <- | Plus |
2R | 11580235..11580760 | 296..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:31 Download gff for
BS10638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7467554..7467675 | 174..295 | 100 | <- | Plus |
arm_2R | 7467328..7467488 | 12..173 | 98 | <- | Plus |
arm_2R | 7467740..7468265 | 296..821 | 100 | | Plus |
BS10638.5prime Sequence
952 bp (847 high quality bases) assembled on 2006-04-19
> BS10638.5prime
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCTAAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTC
CCGGGCGCCTCCGCCAAAGAAAGAAGTGCAGGTGGAACATCCGGCAGCAG
CA
BS10638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10897-PC | 2052 | tou-RC | 1..906 | 17..922 | 4505 | 99.8 | Plus |
CG10897-PA | 9243 | tou-RA | 6795..7368 | 16..589 | 2870 | 100 | Plus |
CG10897-PA | 9243 | tou-RA | 7764..8097 | 589..922 | 1645 | 99.7 | Plus |
CG10897-PD | 1383 | tou-RD | 1..237 | 686..922 | 1160 | 99.5 | Plus |
CG10897-PA | 9243 | tou-RA | 8096..8128 | 920..952 | 165 | 100 | Plus |
CG10897-PC | 2052 | tou-RC | 905..937 | 920..952 | 165 | 100 | Plus |
CG10897-PD | 1383 | tou-RD | 236..268 | 920..952 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tou-RA | 10470 | CG10897-RA | 7471..8408 | 16..952 | 4650 | 99.8 | Plus |
tou-RG | 10721 | CG10897-RG | 7326..7899 | 16..589 | 2870 | 100 | Plus |
tou-RF | 11743 | CG10897-RF | 6953..7526 | 16..589 | 2870 | 100 | Plus |
tou-RG | 10721 | CG10897-RG | 8295..8659 | 589..952 | 1785 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11583015..11583588 | 589..16 | 2870 | 100 | Minus |
2R | 25286936 | 2R | 11581157..11581399 | 952..711 | 1150 | 99.2 | Minus |
2R | 25286936 | 2R | 11581626..11581750 | 713..589 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:46:28 has no hits.
BS10638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:38 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-PC | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:33 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10897-PC | 1..936 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:42:12 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RA | 7463..8407 | 7..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:52 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RA | 7463..8407 | 7..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:52 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11581158..11581398 | 712..951 | 99 | <- | Minus |
2R | 11581628..11581749 | 590..711 | 100 | <- | Minus |
2R | 11583015..11583596 | 7..589 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:42:12 Download gff for
BS10638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7468663..7468903 | 712..951 | 99 | <- | Minus |
arm_2R | 7469133..7469254 | 590..711 | 100 | <- | Minus |
arm_2R | 7470520..7471101 | 7..589 | 99 | | Minus |
BS10638.complete Sequence
2084 bp assembled on 2007-11-30
GenBank Submission: FJ636699
> BS10638.complete
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCTAAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTC
CCGGGCGCCTCCGCCGAAGAAAAGAAGTGCAGGTGGAACATCCGGCAGCA
GCAGCAAATCTAGGAGGGACAGGGATAGGGAGTCGGGCGGATCGGCCAAG
CGGCGTAGCGACAACAGCAAGACACCAGCCATGGAGCACATGCAGCAGCA
GCAGATGCCACTGGCAGGCGGGGATTCCCACCATCATCATCATCAGCAGC
CGCCGTCGCTGAACTCCTCGCACGATGAGTCGATGAATTCTCTGCCGGCG
GCTCCTCTGAGTCCGGCGCACTCGGTGGTCTCGGCCACGAACTACGATGA
CCAGCACCATGCCAACAACTCGGTCGATGGCAGCAGTCGCTTCCACGCGC
ATCTCATTCCCCCGTCAAATAATGGCACTGCGGCTCTGCTGGAAGATGTG
CCGGGTGGCGCCAATGTGATGCCCGGCGTCTATCCAGTTTATACGCCAGT
TGCGGCTGGCAACTTCTCAGCCGGATTGATTAACCAAGCGCCGGTGCAGC
CAGCGATGCCGTTTGCCAACGTGGTCGCCATGTCGCCACGGGCTGTCACG
CCCACCCGCACCCGAACGCCCACACCGACGCCAGCACCCACTCCGCCACC
ACCACCGCCGACACCGCTGCTAATGCAGGCCTCGCCCACAGCCACCGCCC
TCCATGTAAACGCCTGCCAGTCACCGCCCCAACAACAGCATGCGCAGCTG
ATGACCATGCCCTCGCCACCAGCCATTGGAGTCGGAACGGCCACTAACCA
AATGTCGCCACCGCCCATCAACATACATGCCATTCAGGAAGCCAAGGAGA
AGCTGAAGCAGGAGAAGAAGGAGAAGCACGCCACCAAGAAGCTCATGAAG
GAGCTGGCTGTCTGCAAGACGCTATTGGGGGAAATGGAGCTTCATGAGGA
CTCGTGGCCATTTCTTTTGCCAGTAAACACCAAGCAGTTTCCCACATATC
GAAAAATAATCAAAACTCCCATGGACTTGTCCACAATCAAAAAGAAATTG
CAAGATTTGAGCTACAAAACCCGTGAGGACTTCTGCGTGGACGTGCGTCA
GATCTTCGATAATTGCGAGATGTTTAACGAGGACGATTCGCCCGTTGGCA
AGGCAGGCCACGGCATGCGCAAGTTCTTCGAGTCCCGCTGGGGTGAACTG
ACTGACAAGCACTCCTGAAAGCTTTCTAGACCAT
BS10638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tou-RA | 9000 | CG10897-PA | 6948..9000 | 16..2068 | 10265 | 100 | Plus |
tou-RG | 9285 | CG10897-PG | 7806..9285 | 589..2068 | 7400 | 100 | Plus |
tou-RF | 9177 | CG10897-PF | 7698..9177 | 589..2068 | 7400 | 100 | Plus |
tou-RG | 9285 | CG10897-PG | 6837..7410 | 16..589 | 2870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tou-RA | 10470 | CG10897-RA | 7471..9523 | 16..2068 | 10265 | 100 | Plus |
tou-RG | 10721 | CG10897-RG | 8295..9774 | 589..2068 | 7400 | 100 | Plus |
tou-RF | 11743 | CG10897-RF | 7922..9401 | 589..2068 | 7400 | 100 | Plus |
tou-RG | 10721 | CG10897-RG | 7326..7899 | 16..589 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11580235..11580864 | 1789..1160 | 3150 | 100 | Minus |
2R | 25286936 | 2R | 11583015..11583588 | 589..16 | 2870 | 100 | Minus |
2R | 25286936 | 2R | 11580949..11581399 | 1161..711 | 2255 | 100 | Minus |
2R | 25286936 | 2R | 11579827..11579985 | 2068..1910 | 795 | 100 | Minus |
2R | 25286936 | 2R | 11581626..11581750 | 713..589 | 625 | 100 | Minus |
2R | 25286936 | 2R | 11580049..11580172 | 1911..1788 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:38:55 has no hits.
BS10638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:01 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RA | 6940..9000 | 7..2068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:44 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RC | 62..2126 | 7..2073 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:37 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RA | 7472..9522 | 17..2067 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:01 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RC | 71..2121 | 17..2067 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:06 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tou-RA | 7472..9522 | 17..2067 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:06 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11581628..11581749 | 590..711 | 100 | <- | Minus |
2R | 11579828..11579983 | 1912..2067 | 100 | <- | Minus |
2R | 11580049..11580170 | 1790..1911 | 100 | <- | Minus |
2R | 11580235..11580862 | 1162..1789 | 100 | <- | Minus |
2R | 11580949..11581398 | 712..1161 | 100 | <- | Minus |
2R | 11583015..11583587 | 17..589 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:37 Download gff for
BS10638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7467333..7467488 | 1912..2067 | 100 | <- | Minus |
arm_2R | 7467554..7467675 | 1790..1911 | 100 | <- | Minus |
arm_2R | 7467740..7468367 | 1162..1789 | 100 | <- | Minus |
arm_2R | 7468454..7468903 | 712..1161 | 100 | <- | Minus |
arm_2R | 7469133..7469254 | 590..711 | 100 | <- | Minus |
arm_2R | 7470520..7471092 | 17..589 | 100 | | Minus |
BS10638.pep Sequence
Translation from 16 to 2067
> BS10638.pep
MIRERIIDLEANIERRYLKPPLGSQTGDAHLAVIAQNQHTTTQTQNSASA
AAYLLQMQQQQQQQQLAQQQQQQQQGSGAGNSLNPSSFNERTMALAAAAA
ASGPGNATGVANSAVVAGATPCESGSGEPNSGNASPASNCDSDRDEKVEQ
IPKGLVQWRDAVSRSHTTAQLAMALYVLESCVAWDKSIMKANCQFCTSGE
NEDKLLLCDGCDKGYHTYCFKPKMDNIPDGDWYCYECVNKATNERKCIVC
GGHRPSPVGKMIYCDLCPRAYHADCYIPPLLKVPRGKWYCHGCISRAPPP
KKRSAGGTSGSSSKSRRDRDRESGGSAKRRSDNSKTPAMEHMQQQQMPLA
GGDSHHHHHQQPPSLNSSHDESMNSLPAAPLSPAHSVVSATNYDDQHHAN
NSVDGSSRFHAHLIPPSNNGTAALLEDVPGGANVMPGVYPVYTPVAAGNF
SAGLINQAPVQPAMPFANVVAMSPRAVTPTRTRTPTPTPAPTPPPPPPTP
LLMQASPTATALHVNACQSPPQQQHAQLMTMPSPPAIGVGTATNQMSPPP
INIHAIQEAKEKLKQEKKEKHATKKLMKELAVCKTLLGEMELHEDSWPFL
LPVNTKQFPTYRKIIKTPMDLSTIKKKLQDLSYKTREDFCVDVRQIFDNC
EMFNEDDSPVGKAGHGMRKFFESRWGELTDKHS*
BS10638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tou-PA | 2999 | CG10897-PA | 2317..2999 | 1..683 | 3670 | 100 | Plus |
tou-PG | 3094 | CG10897-PG | 2473..3094 | 42..683 | 2710 | 80.4 | Plus |
tou-PF | 3058 | CG10897-PF | 2437..3058 | 42..683 | 2710 | 80.4 | Plus |
tou-PE | 3131 | CG10897-PE | 2510..3131 | 42..683 | 2710 | 80.4 | Plus |
tou-PB | 249 | CG10897-PB | 1..249 | 435..683 | 1332 | 100 | Plus |
tou-PG | 3094 | CG10897-PG | 2280..2612 | 1..354 | 975 | 61.3 | Plus |
tou-PF | 3058 | CG10897-PF | 2244..2576 | 1..354 | 975 | 61.3 | Plus |
tou-PE | 3131 | CG10897-PE | 2317..2649 | 1..354 | 975 | 61.3 | Plus |