Clone BS10638 Report

Search the DGRC for BS10638

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:38
Vector:pDNR-Dual
Associated Gene/Transcripttou-RB
Protein status:BS10638.pep: gold
Sequenced Size:16

Clone Sequence Records

BS10638.3prime Sequence

821 bp (820 high quality bases) assembled on 2006-04-19

> BS10638.3prime
ATGGTCTAGAAAGCTTTCAGGAGTGCTTGTCAGTCAGTTCACCCCAGCGG
GACTCGAAGAACTTGCGCATGCCGTGGCCTGCCTTGCCAACGGGCGAATC
GTCCTCGTTAAACATCTCGCAATTATCGAAGATCTGACGCACGTCCACGC
AGAAGTCCTCACGGGTTTTGTAGCTCAAATCTTGCAATTTCTTTTTGATT
GTGGACAAGTCCATGGGAGTTTTGATTATTTTTCGATATGTGGGAAACTG
CTTGGTGTTTACTGGCAAAAGAAATGGCCACGAGTCCTCATGAAGCTCCA
TTTCCCCCAATAGCGTCTTGCAGACAGCCAGCTCCTTCATGAGCTTCTTG
GTGGCGTGCTTCTCCTTCTTCTCCTGCTTCAGCTTCTCCTTGGCTTCCTG
AATGGCATGTATGTTGATGGGCGGTGGCGACATTTGGTTAGTGGCCGTTC
CGACTCCAATGGCTGGTGGCGAGGGCATGGTCATCAGCTGCGCATGCTGT
TGTTGGGGCGGTGACTGGCAGGCGTTTACATGGAGGGCGGTGGCTGTGGG
CGAGGCCTGCATTAGCAGCGGTGTCGGCGGTGGTGGTGGCGGAGTGGGTG
CTGGCGTCGGTGTGGGCGTTCGGGTGCGGGTGGGCGTGACAGCCCGTGGC
GACATGGCGACCACGTTGGCAAACGGCATCGCTGGCTGCACCGGCGCTTG
GTTAATCAATCCGGCTGAGAAGTTGCCAGCCGCAACTGGCGTATAAACTG
GATAGACGCCGGGCATCACATTGGCGCCACCCGGCACATCTTCCAGCAGA
GCCGCAGTGCCATTATTTGAC

BS10638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10897-PA 9243 tou-RA 8439..9243 821..17 4025 100 Minus
CG10897-PC 2052 tou-RC 1248..2052 821..17 4025 100 Minus
CG10897-PD 1383 tou-RD 579..1383 821..17 4025 100 Minus
CG10897-PB 750 tou-RB 1..750 766..17 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
tou-RG 10721 CG10897-RG 8970..9774 821..17 4025 100 Minus
tou-RF 11743 CG10897-RF 8597..9401 821..17 4025 100 Minus
tou-RE 10866 CG10897-RE 9115..9919 821..17 4025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11580235..11580760 296..821 2630 100 Plus
2R 25286936 2R 11579827..11579985 17..175 795 100 Plus
2R 25286936 2R 11580049..11580172 174..297 620 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:09:15 has no hits.

BS10638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:37 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
tou-PA 8439..9243 17..821 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:32 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10897-PD 579..1383 17..821 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:16:31 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
tou-RE 9115..9923 12..821 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:46:33 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
tou-RE 9115..9923 12..821 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:46:33 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11580049..11580170 174..295 100 <- Plus
2R 11579823..11579983 12..173 98 <- Plus
2R 11580235..11580760 296..821 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:16:31 Download gff for BS10638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7467554..7467675 174..295 100 <- Plus
arm_2R 7467328..7467488 12..173 98 <- Plus
arm_2R 7467740..7468265 296..821 100   Plus

BS10638.5prime Sequence

952 bp (847 high quality bases) assembled on 2006-04-19

> BS10638.5prime
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCTAAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTC
CCGGGCGCCTCCGCCAAAGAAAGAAGTGCAGGTGGAACATCCGGCAGCAG
CA

BS10638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10897-PC 2052 tou-RC 1..906 17..922 4505 99.8 Plus
CG10897-PA 9243 tou-RA 6795..7368 16..589 2870 100 Plus
CG10897-PA 9243 tou-RA 7764..8097 589..922 1645 99.7 Plus
CG10897-PD 1383 tou-RD 1..237 686..922 1160 99.5 Plus
CG10897-PA 9243 tou-RA 8096..8128 920..952 165 100 Plus
CG10897-PC 2052 tou-RC 905..937 920..952 165 100 Plus
CG10897-PD 1383 tou-RD 236..268 920..952 165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
tou-RA 10470 CG10897-RA 7471..8408 16..952 4650 99.8 Plus
tou-RG 10721 CG10897-RG 7326..7899 16..589 2870 100 Plus
tou-RF 11743 CG10897-RF 6953..7526 16..589 2870 100 Plus
tou-RG 10721 CG10897-RG 8295..8659 589..952 1785 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:46:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11583015..11583588 589..16 2870 100 Minus
2R 25286936 2R 11581157..11581399 952..711 1150 99.2 Minus
2R 25286936 2R 11581626..11581750 713..589 625 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:46:28 has no hits.

BS10638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:38 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
tou-PC 1..936 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:33 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10897-PC 1..936 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:42:12 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
tou-RA 7463..8407 7..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:20:52 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
tou-RA 7463..8407 7..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:20:52 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11581158..11581398 712..951 99 <- Minus
2R 11581628..11581749 590..711 100 <- Minus
2R 11583015..11583596 7..589 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:42:12 Download gff for BS10638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7468663..7468903 712..951 99 <- Minus
arm_2R 7469133..7469254 590..711 100 <- Minus
arm_2R 7470520..7471101 7..589 99   Minus

BS10638.complete Sequence

2084 bp assembled on 2007-11-30

GenBank Submission: FJ636699

> BS10638.complete
GAAGTTATCAGTCGACATGATCCGAGAGAGAATCATCGACTTGGAGGCAA
ATATCGAAAGACGTTACTTGAAGCCGCCTTTGGGCTCGCAGACAGGCGAT
GCCCATTTGGCGGTTATTGCTCAGAACCAGCATACCACCACCCAGACGCA
GAACTCTGCATCGGCAGCAGCATATCTCCTGCAGATGCAACAGCAGCAGC
AGCAACAGCAGTTGGCCCAGCAGCAGCAGCAACAGCAACAGGGTTCGGGT
GCGGGAAATAGCCTGAATCCCTCATCCTTCAACGAGCGTACTATGGCATT
GGCGGCGGCAGCAGCTGCTTCGGGGCCAGGAAACGCAACCGGAGTAGCCA
ACTCGGCAGTCGTGGCAGGAGCCACGCCCTGCGAATCGGGCAGCGGAGAA
CCGAATTCCGGCAACGCGTCACCGGCCAGCAACTGTGACAGCGATCGGGA
CGAGAAGGTGGAGCAGATACCCAAGGGATTGGTGCAGTGGCGGGACGCAG
TATCCCGATCGCACACCACCGCCCAGCTGGCGATGGCCCTGTACGTTCTG
GAATCCTGCGTGGCTTGGGACAAGAGCATTATGAAAGCGAATTGCCAGTT
CTGCACGTCCGGCGAAAACGAGGACAAGTTGCTACTGTGCGACGGCTGTG
ACAAGGGCTATCACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCC
GATGGCGATTGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCG
CAAGTGCATCGTTTGCGGCGGTCATCGTCCGTCGCCCGTGGGGAAGATGA
TCTACTGTGACTTGTGTCCTCGTGCCTACCACGCCGATTGCTATATACCG
CCGCTGCTAAAGGTACCGCGTGGCAAGTGGTACTGCCACGGTTGCATCTC
CCGGGCGCCTCCGCCGAAGAAAAGAAGTGCAGGTGGAACATCCGGCAGCA
GCAGCAAATCTAGGAGGGACAGGGATAGGGAGTCGGGCGGATCGGCCAAG
CGGCGTAGCGACAACAGCAAGACACCAGCCATGGAGCACATGCAGCAGCA
GCAGATGCCACTGGCAGGCGGGGATTCCCACCATCATCATCATCAGCAGC
CGCCGTCGCTGAACTCCTCGCACGATGAGTCGATGAATTCTCTGCCGGCG
GCTCCTCTGAGTCCGGCGCACTCGGTGGTCTCGGCCACGAACTACGATGA
CCAGCACCATGCCAACAACTCGGTCGATGGCAGCAGTCGCTTCCACGCGC
ATCTCATTCCCCCGTCAAATAATGGCACTGCGGCTCTGCTGGAAGATGTG
CCGGGTGGCGCCAATGTGATGCCCGGCGTCTATCCAGTTTATACGCCAGT
TGCGGCTGGCAACTTCTCAGCCGGATTGATTAACCAAGCGCCGGTGCAGC
CAGCGATGCCGTTTGCCAACGTGGTCGCCATGTCGCCACGGGCTGTCACG
CCCACCCGCACCCGAACGCCCACACCGACGCCAGCACCCACTCCGCCACC
ACCACCGCCGACACCGCTGCTAATGCAGGCCTCGCCCACAGCCACCGCCC
TCCATGTAAACGCCTGCCAGTCACCGCCCCAACAACAGCATGCGCAGCTG
ATGACCATGCCCTCGCCACCAGCCATTGGAGTCGGAACGGCCACTAACCA
AATGTCGCCACCGCCCATCAACATACATGCCATTCAGGAAGCCAAGGAGA
AGCTGAAGCAGGAGAAGAAGGAGAAGCACGCCACCAAGAAGCTCATGAAG
GAGCTGGCTGTCTGCAAGACGCTATTGGGGGAAATGGAGCTTCATGAGGA
CTCGTGGCCATTTCTTTTGCCAGTAAACACCAAGCAGTTTCCCACATATC
GAAAAATAATCAAAACTCCCATGGACTTGTCCACAATCAAAAAGAAATTG
CAAGATTTGAGCTACAAAACCCGTGAGGACTTCTGCGTGGACGTGCGTCA
GATCTTCGATAATTGCGAGATGTTTAACGAGGACGATTCGCCCGTTGGCA
AGGCAGGCCACGGCATGCGCAAGTTCTTCGAGTCCCGCTGGGGTGAACTG
ACTGACAAGCACTCCTGAAAGCTTTCTAGACCAT

BS10638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
tou-RA 9000 CG10897-PA 6948..9000 16..2068 10265 100 Plus
tou-RG 9285 CG10897-PG 7806..9285 589..2068 7400 100 Plus
tou-RF 9177 CG10897-PF 7698..9177 589..2068 7400 100 Plus
tou-RG 9285 CG10897-PG 6837..7410 16..589 2870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
tou-RA 10470 CG10897-RA 7471..9523 16..2068 10265 100 Plus
tou-RG 10721 CG10897-RG 8295..9774 589..2068 7400 100 Plus
tou-RF 11743 CG10897-RF 7922..9401 589..2068 7400 100 Plus
tou-RG 10721 CG10897-RG 7326..7899 16..589 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11580235..11580864 1789..1160 3150 100 Minus
2R 25286936 2R 11583015..11583588 589..16 2870 100 Minus
2R 25286936 2R 11580949..11581399 1161..711 2255 100 Minus
2R 25286936 2R 11579827..11579985 2068..1910 795 100 Minus
2R 25286936 2R 11581626..11581750 713..589 625 100 Minus
2R 25286936 2R 11580049..11580172 1911..1788 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:38:55 has no hits.

BS10638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:01 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
tou-RA 6940..9000 7..2068 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:44 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
tou-RC 62..2126 7..2073 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:56:37 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
tou-RA 7472..9522 17..2067 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:01 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
tou-RC 71..2121 17..2067 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:06 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
tou-RA 7472..9522 17..2067 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:06 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11581628..11581749 590..711 100 <- Minus
2R 11579828..11579983 1912..2067 100 <- Minus
2R 11580049..11580170 1790..1911 100 <- Minus
2R 11580235..11580862 1162..1789 100 <- Minus
2R 11580949..11581398 712..1161 100 <- Minus
2R 11583015..11583587 17..589 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:56:37 Download gff for BS10638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7467333..7467488 1912..2067 100 <- Minus
arm_2R 7467554..7467675 1790..1911 100 <- Minus
arm_2R 7467740..7468367 1162..1789 100 <- Minus
arm_2R 7468454..7468903 712..1161 100 <- Minus
arm_2R 7469133..7469254 590..711 100 <- Minus
arm_2R 7470520..7471092 17..589 100   Minus

BS10638.pep Sequence

Translation from 16 to 2067

> BS10638.pep
MIRERIIDLEANIERRYLKPPLGSQTGDAHLAVIAQNQHTTTQTQNSASA
AAYLLQMQQQQQQQQLAQQQQQQQQGSGAGNSLNPSSFNERTMALAAAAA
ASGPGNATGVANSAVVAGATPCESGSGEPNSGNASPASNCDSDRDEKVEQ
IPKGLVQWRDAVSRSHTTAQLAMALYVLESCVAWDKSIMKANCQFCTSGE
NEDKLLLCDGCDKGYHTYCFKPKMDNIPDGDWYCYECVNKATNERKCIVC
GGHRPSPVGKMIYCDLCPRAYHADCYIPPLLKVPRGKWYCHGCISRAPPP
KKRSAGGTSGSSSKSRRDRDRESGGSAKRRSDNSKTPAMEHMQQQQMPLA
GGDSHHHHHQQPPSLNSSHDESMNSLPAAPLSPAHSVVSATNYDDQHHAN
NSVDGSSRFHAHLIPPSNNGTAALLEDVPGGANVMPGVYPVYTPVAAGNF
SAGLINQAPVQPAMPFANVVAMSPRAVTPTRTRTPTPTPAPTPPPPPPTP
LLMQASPTATALHVNACQSPPQQQHAQLMTMPSPPAIGVGTATNQMSPPP
INIHAIQEAKEKLKQEKKEKHATKKLMKELAVCKTLLGEMELHEDSWPFL
LPVNTKQFPTYRKIIKTPMDLSTIKKKLQDLSYKTREDFCVDVRQIFDNC
EMFNEDDSPVGKAGHGMRKFFESRWGELTDKHS*

BS10638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
tou-PA 2999 CG10897-PA 2317..2999 1..683 3670 100 Plus
tou-PG 3094 CG10897-PG 2473..3094 42..683 2710 80.4 Plus
tou-PF 3058 CG10897-PF 2437..3058 42..683 2710 80.4 Plus
tou-PE 3131 CG10897-PE 2510..3131 42..683 2710 80.4 Plus
tou-PB 249 CG10897-PB 1..249 435..683 1332 100 Plus
tou-PG 3094 CG10897-PG 2280..2612 1..354 975 61.3 Plus
tou-PF 3058 CG10897-PF 2244..2576 1..354 975 61.3 Plus
tou-PE 3131 CG10897-PE 2317..2649 1..354 975 61.3 Plus