Clone BS10639 Report

Search the DGRC for BS10639

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlT-RA
Protein status:BS10639.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10639.3prime Sequence

869 bp (805 high quality bases) assembled on 2006-04-19

> BS10639.3prime
ATGGTCTAGAAAGCTTTTAGTAGGGTCCGGACTTTCCAGGTGGTCCGTAG
TTGCTGGACGGGGCCGAGATGGAGCCGCTGTCTCCACCAGTGAAGCCACC
ATCGCCGCCAGAGGTGTAACCATTGCCGGTGTTGGTCTGGGTGAAGCCAC
CAGTGGAGCCGGAGATTCCTCCAGAAATGCCGCTGGAATCCTTCTGGGTC
TTGTACTTGATGAAGTACACCTCGGGCTTCGATGGCTGCGTGGGTGCGGG
CGTGGGGATGACAATGTCCTGCTGATCCTCGGGCTTCTTCACCAGCACGT
AGACCAGAGTCTTCTCCTCGTTCTGAGGCTGCAGGGGAATGACCGGAGCC
TGGTACGATGGTGGCGATGGGGCCTTGATGAAGATGATCTTGTAGTGCTT
CTGGGACTGGCCAATGGGCAGGTTAGGGCGCTGGCGCACTTCTTCCTGCT
CTGGTGGTGGCACGTGCACGTAGATGTGCTTCTGCACCAAGGTGGTGCCA
CCACCACCACCGCCGCCGCCTCCGAATCCGCCAATGCTGCCACCTCCGCC
GAAACCGCCGCCGGAGCCGCCGCCGGAGCCGCCTCCGAATCCACCGCCGA
ATCCACCGCCTCCGCCTCCACCACCGCCGCTGCTGAAGCCACCGCCTCCG
CCGCTGCTGAATCCTCCTCCGCCGCTGCCACCGCCGAATCCACCACCGAA
TCCTCCACCAATACCGCCGCCGAAGCCGCCGCTGGAGCCACCTCCGAATC
CACCGCCCAGGCCACCGCCGGAGCCGCCGCCAGAGCCACCGCCGCCACCA
GGACGGTTGTAGTTGTATCCGGCTTCAGGACGAGCGGCGGCCAGCGCCAG
GCAGGACATTAGGATGAAG

BS10639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5812-PA 861 GCR(ich)-RA 9..861 869..17 4265 100 Minus
CG14254-PA 1083 CG14254-RA 638..686 237..189 170 93.8 Minus
CG8986-PA 597 CG8986-RA 293..323 402..372 155 100 Minus
CG14534-PA 594 CG14534-RA 265..309 403..359 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:41
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 199..1052 869..16 4270 100 Minus
lectin-28C-RC 3044 CG7106-RC 1609..1823 189..403 410 80.7 Plus
TwdlE-RA 1346 CG14534-RA 404..618 403..189 410 80.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049920..27050449 545..16 2650 100 Minus
3R 32079331 3R 27049520..27049848 869..541 1645 100 Minus
3R 32079331 3R 26995698..26995834 325..189 370 84.7 Minus
2L 23513712 2L 7858685..7858899 189..403 370 78.1 Plus
X 23542271 X 16735536..16735594 255..197 205 89.8 Minus
Blast to na_te.dros performed on 2015-02-11 11:33:38 has no hits.

BS10639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:39 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 9..861 17..869 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:34 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 9..861 17..869 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:57:39 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 199..1059 8..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:09 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 199..1059 8..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:09 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27049520..27049845 544..869 100 -> Minus
3R 27049922..27050456 8..543 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:57:39 Download gff for BS10639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875242..22875567 544..869 100 -> Minus
arm_3R 22875644..22876178 8..543 99   Minus

BS10639.5prime Sequence

434 bp (414 high quality bases) assembled on 2006-04-19

> BS10639.5prime
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCNCC
NCCTTGGTGCNGANGCNCNTCTNCGTGCCCGTGC

BS10639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5812-PA 861 GCR(ich)-RA 1..394 17..410 1932 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 190..608 16..434 2003 98.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049511..27049848 16..353 1690 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:43:10 has no hits.

BS10639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:41 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 1..412 17..428 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:35 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5812-PA 1..412 17..428 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:05 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 185..602 8..428 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:14 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 185..602 8..428 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:14 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27049506..27049845 8..350 99 -> Plus
3R 27049922..27049999 351..428 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:05 Download gff for BS10639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875228..22875567 8..350 99 -> Plus
arm_3R 22875644..22875721 351..428 91   Plus

BS10639.complete Sequence

893 bp assembled on 2006-11-01

GenBank Submission: FJ636700

> BS10639.complete
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAGAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCAGACCAACACCGGCAATGGTTACACCTCTGGCGGCGATGGTGGCT
TCACTGGTGGAGACAGCGGCTCCATCTCGGCCCCGTCCAGCAACTACGGA
CCACCTGGAAAGTCCGGACCCTACTAAAAGCTTTCTAGACCAT

BS10639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 861 CG5812-PA 1..861 17..877 4305 100 Plus
TwdlC-RA 1083 CG14254-PA 550..686 569..705 370 84.7 Plus
TwdlE-RA 594 CG14534-PA 265..479 491..705 370 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-RA 1607 CG5812-RA 190..1052 16..878 4315 100 Plus
lectin-28C-RC 3044 CG7106-RC 1609..1823 705..491 370 78.1 Minus
TwdlC-RA 1396 CG14254-RA 652..788 569..705 370 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27049920..27050449 349..878 2650 100 Plus
3R 32079331 3R 27049511..27049848 16..353 1690 100 Plus
3R 32079331 3R 26995698..26995834 569..705 370 84.7 Plus
2L 23513712 2L 7858685..7858899 705..491 370 78.1 Minus
X 23542271 X 16735536..16735594 639..697 205 89.8 Plus
Blast to na_te.dros performed on 2014-11-27 00:58:27 has no hits.

BS10639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:08 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:27 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 180..1054 8..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:32 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 191..1049 17..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:08 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 180..1054 8..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:08 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlT-RA 191..1049 17..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:08 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27049512..27049845 17..350 100 -> Plus
3R 27049922..27050446 351..875 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:32 Download gff for BS10639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22875234..22875567 17..350 100 -> Plus
arm_3R 22875644..22876168 351..875 100   Plus

BS10639.pep Sequence

Translation from 16 to 876

> BS10639.pep
MKAFILMSCLALAAARPEAGYNYNRPGGGGGSGGGSGGGLGGGFGGGSSG
GFGGGIGGGFGGGFGGGSGGGGFSSGGGGGFSSGGGGGGGGGFGGGFGGG
SGGGSGGGFGGGGSIGGFGGGGGGGGGTTLVQKHIYVHVPPPEQEEVRQR
PNLPIGQSQKHYKIIFIKAPSPPSYQAPVIPLQPQNEEKTLVYVLVKKPE
DQQDIVIPTPAPTQPSKPEVYFIKYKTQKDSSGISGGISGSTGGFTQTNT
GNGYTSGGDGGFTGGDSGSISAPSSNYGPPGKSGPY*

BS10639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlT-PA 286 CG5812-PA 1..286 1..286 1561 100 Plus
TwdlE-PA 197 CG14534-PA 40..163 113..233 403 63.7 Plus
TwdlC-PA 360 CG14254-PA 117..235 121..236 378 62.2 Plus
Twdlalpha-PA 388 CG32574-PA 1..347 1..278 348 32.6 Plus
CG13376-PB 200 CG13376-PB 1..169 1..135 335 50.3 Plus