Clone Sequence Records
BS10639.3prime Sequence
869 bp (805 high quality bases) assembled on 2006-04-19
> BS10639.3prime
ATGGTCTAGAAAGCTTTTAGTAGGGTCCGGACTTTCCAGGTGGTCCGTAG
TTGCTGGACGGGGCCGAGATGGAGCCGCTGTCTCCACCAGTGAAGCCACC
ATCGCCGCCAGAGGTGTAACCATTGCCGGTGTTGGTCTGGGTGAAGCCAC
CAGTGGAGCCGGAGATTCCTCCAGAAATGCCGCTGGAATCCTTCTGGGTC
TTGTACTTGATGAAGTACACCTCGGGCTTCGATGGCTGCGTGGGTGCGGG
CGTGGGGATGACAATGTCCTGCTGATCCTCGGGCTTCTTCACCAGCACGT
AGACCAGAGTCTTCTCCTCGTTCTGAGGCTGCAGGGGAATGACCGGAGCC
TGGTACGATGGTGGCGATGGGGCCTTGATGAAGATGATCTTGTAGTGCTT
CTGGGACTGGCCAATGGGCAGGTTAGGGCGCTGGCGCACTTCTTCCTGCT
CTGGTGGTGGCACGTGCACGTAGATGTGCTTCTGCACCAAGGTGGTGCCA
CCACCACCACCGCCGCCGCCTCCGAATCCGCCAATGCTGCCACCTCCGCC
GAAACCGCCGCCGGAGCCGCCGCCGGAGCCGCCTCCGAATCCACCGCCGA
ATCCACCGCCTCCGCCTCCACCACCGCCGCTGCTGAAGCCACCGCCTCCG
CCGCTGCTGAATCCTCCTCCGCCGCTGCCACCGCCGAATCCACCACCGAA
TCCTCCACCAATACCGCCGCCGAAGCCGCCGCTGGAGCCACCTCCGAATC
CACCGCCCAGGCCACCGCCGGAGCCGCCGCCAGAGCCACCGCCGCCACCA
GGACGGTTGTAGTTGTATCCGGCTTCAGGACGAGCGGCGGCCAGCGCCAG
GCAGGACATTAGGATGAAG
BS10639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5812-PA | 861 | GCR(ich)-RA | 9..861 | 869..17 | 4265 | 100 | Minus |
CG14254-PA | 1083 | CG14254-RA | 638..686 | 237..189 | 170 | 93.8 | Minus |
CG8986-PA | 597 | CG8986-RA | 293..323 | 402..372 | 155 | 100 | Minus |
CG14534-PA | 594 | CG14534-RA | 265..309 | 403..359 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:33:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 199..1052 | 869..16 | 4270 | 100 | Minus |
lectin-28C-RC | 3044 | CG7106-RC | 1609..1823 | 189..403 | 410 | 80.7 | Plus |
TwdlE-RA | 1346 | CG14534-RA | 404..618 | 403..189 | 410 | 80.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:33:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049920..27050449 | 545..16 | 2650 | 100 | Minus |
3R | 32079331 | 3R | 27049520..27049848 | 869..541 | 1645 | 100 | Minus |
3R | 32079331 | 3R | 26995698..26995834 | 325..189 | 370 | 84.7 | Minus |
2L | 23513712 | 2L | 7858685..7858899 | 189..403 | 370 | 78.1 | Plus |
X | 23542271 | X | 16735536..16735594 | 255..197 | 205 | 89.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:33:38 has no hits.
BS10639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:39 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 9..861 | 17..869 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:34 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 9..861 | 17..869 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:57:39 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 199..1059 | 8..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:09 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 199..1059 | 8..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:09 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049520..27049845 | 544..869 | 100 | -> | Minus |
3R | 27049922..27050456 | 8..543 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:57:39 Download gff for
BS10639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875242..22875567 | 544..869 | 100 | -> | Minus |
arm_3R | 22875644..22876178 | 8..543 | 99 | | Minus |
BS10639.5prime Sequence
434 bp (414 high quality bases) assembled on 2006-04-19
> BS10639.5prime
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCNCC
NCCTTGGTGCNGANGCNCNTCTNCGTGCCCGTGC
BS10639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5812-PA | 861 | GCR(ich)-RA | 1..394 | 17..410 | 1932 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:43:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 190..608 | 16..434 | 2003 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049511..27049848 | 16..353 | 1690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:43:10 has no hits.
BS10639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:41 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 1..412 | 17..428 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:35 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5812-PA | 1..412 | 17..428 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:22:05 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 185..602 | 8..428 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:14 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 185..602 | 8..428 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:14 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049506..27049845 | 8..350 | 99 | -> | Plus |
3R | 27049922..27049999 | 351..428 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:22:05 Download gff for
BS10639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875228..22875567 | 8..350 | 99 | -> | Plus |
arm_3R | 22875644..22875721 | 351..428 | 91 | | Plus |
BS10639.complete Sequence
893 bp assembled on 2006-11-01
GenBank Submission: FJ636700
> BS10639.complete
GAAGTTATCAGTCGACATGAAAGCCTTCATCCTAATGTCCTGCCTGGCGC
TGGCCGCCGCTCGTCCTGAAGCCGGATACAACTACAACCGTCCTGGTGGC
GGCGGTGGCTCTGGCGGCGGCTCCGGCGGTGGCCTGGGCGGTGGATTCGG
AGGTGGCTCCAGCGGCGGCTTCGGCGGCGGTATTGGTGGAGGATTCGGTG
GTGGATTCGGCGGTGGCAGCGGCGGAGGAGGATTCAGCAGCGGCGGAGGC
GGTGGCTTCAGCAGCGGCGGTGGTGGAGGCGGAGGCGGTGGATTCGGCGG
TGGATTCGGAGGCGGCTCCGGCGGCGGCTCCGGCGGCGGTTTCGGCGGAG
GTGGCAGCATTGGCGGATTCGGAGGCGGCGGCGGTGGTGGTGGTGGCACC
ACCTTGGTGCAGAAGCACATCTACGTGCACGTGCCACCACCAGAGCAGGA
AGAAGTGCGCCAGCGCCCTAACCTGCCCATTGGCCAGTCCCAGAAGCACT
ACAAGATCATCTTCATCAAGGCCCCATCGCCACCATCGTACCAGGCTCCG
GTCATTCCCCTGCAGCCTCAGAACGAGGAGAAGACTCTGGTCTACGTGCT
GGTGAAGAAGCCCGAGGATCAGCAGGACATTGTCATCCCCACGCCCGCAC
CCACGCAGCCATCGAAGCCCGAGGTGTACTTCATCAAGTACAAGACCCAG
AAGGATTCCAGCGGCATTTCTGGAGGAATCTCCGGCTCCACTGGTGGCTT
CACCCAGACCAACACCGGCAATGGTTACACCTCTGGCGGCGATGGTGGCT
TCACTGGTGGAGACAGCGGCTCCATCTCGGCCCCGTCCAGCAACTACGGA
CCACCTGGAAAGTCCGGACCCTACTAAAAGCTTTCTAGACCAT
BS10639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 861 | CG5812-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
TwdlC-RA | 1083 | CG14254-PA | 550..686 | 569..705 | 370 | 84.7 | Plus |
TwdlE-RA | 594 | CG14534-PA | 265..479 | 491..705 | 370 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-RA | 1607 | CG5812-RA | 190..1052 | 16..878 | 4315 | 100 | Plus |
lectin-28C-RC | 3044 | CG7106-RC | 1609..1823 | 705..491 | 370 | 78.1 | Minus |
TwdlC-RA | 1396 | CG14254-RA | 652..788 | 569..705 | 370 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27049920..27050449 | 349..878 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 27049511..27049848 | 16..353 | 1690 | 100 | Plus |
3R | 32079331 | 3R | 26995698..26995834 | 569..705 | 370 | 84.7 | Plus |
2L | 23513712 | 2L | 7858685..7858899 | 705..491 | 370 | 78.1 | Minus |
X | 23542271 | X | 16735536..16735594 | 639..697 | 205 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:58:27 has no hits.
BS10639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:08 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:27:27 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 180..1054 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:32 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 191..1049 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:08 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 180..1054 | 8..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:15:08 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlT-RA | 191..1049 | 17..875 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:15:08 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27049512..27049845 | 17..350 | 100 | -> | Plus |
3R | 27049922..27050446 | 351..875 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:32 Download gff for
BS10639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22875234..22875567 | 17..350 | 100 | -> | Plus |
arm_3R | 22875644..22876168 | 351..875 | 100 | | Plus |
BS10639.pep Sequence
Translation from 16 to 876
> BS10639.pep
MKAFILMSCLALAAARPEAGYNYNRPGGGGGSGGGSGGGLGGGFGGGSSG
GFGGGIGGGFGGGFGGGSGGGGFSSGGGGGFSSGGGGGGGGGFGGGFGGG
SGGGSGGGFGGGGSIGGFGGGGGGGGGTTLVQKHIYVHVPPPEQEEVRQR
PNLPIGQSQKHYKIIFIKAPSPPSYQAPVIPLQPQNEEKTLVYVLVKKPE
DQQDIVIPTPAPTQPSKPEVYFIKYKTQKDSSGISGGISGSTGGFTQTNT
GNGYTSGGDGGFTGGDSGSISAPSSNYGPPGKSGPY*
BS10639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlT-PA | 286 | CG5812-PA | 1..286 | 1..286 | 1561 | 100 | Plus |
TwdlE-PA | 197 | CG14534-PA | 40..163 | 113..233 | 403 | 63.7 | Plus |
TwdlC-PA | 360 | CG14254-PA | 117..235 | 121..236 | 378 | 62.2 | Plus |
Twdlalpha-PA | 388 | CG32574-PA | 1..347 | 1..278 | 348 | 32.6 | Plus |
CG13376-PB | 200 | CG13376-PB | 1..169 | 1..135 | 335 | 50.3 | Plus |