Clone BS10640 Report

Search the DGRC for BS10640

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:40
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10640.pep: validated not full length
Sequenced Size:16

Clone Sequence Records

BS10640.3prime Sequence

798 bp (797 high quality bases) assembled on 2006-04-19

> BS10640.3prime
ATGGTCTAGAAAGCTTTTAATCCAGGTGTTTATACATATCCTCCAGCTGG
GGCTTAAAATAGCTCTTAAGCTGCGGTCTCTTGGCTTTGAATGTGGGCGT
CAGCAGTCCGTTTTGCACCGAGAAGGGATCCGGATGCAGATAGATATCTT
TAACCTGTTCGAATGACTTGAGTCCACTCTGCTTGCCCCAGTTGAGCATG
TCGTTCATGATCAGTTCCTTGACATTCTTATTATTGCACAGGACGGAGAG
TGTGCCGCGTACATTGTTCTCCGTGGCCCATTGCTTCAGTACATCGGTAT
CAGGTACAACAACAGCGATAATGCAGCTCTTTAAGCTCTCTCCATAGACA
TAAACTTGATTTACGTATTGACTGAGCGTGTAGATATTCTCGATCTTCTC
GGGCACTATGTACTCGCCCTGGCTAAGCTTGAAGATGTGCTTGCGGCGAT
CGATGATCCGTAGTGTTCCATTTGGCAGCCACATGCCCACATCGCCTGTA
TGATGCCAGCCCTCCGAATCGATGGCCTCCGCCGTCTTTTCGGGATCCTT
ATAGTAACCATGGAACACATTCGATCCGCGCACACACACCTCGCCAGTAT
TTTGATTGGCAAAGTACTCCATCTCCGGCACATCCACCAGTTTCACAGCA
TTGCAGGACACGGGTGGTCCCACATGGTTGGGCACATGATCTCCCTGAAC
GGTAAGGGTAATGGCCCCCGTGCACTCCGTTTGGCCATATCCCTCGAGAA
CCAGGCAGCCCAGAGCACAGCGCATGAAGGTCAGGACATTTCCGGCCA

BS10640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PA 2115 CG3961-RA 1334..2115 798..17 3885 99.8 Minus
CG3961-PC 2115 CG3961-RC 1334..2115 798..17 3885 99.8 Minus
CG3961-PB 1668 CG3961-RB 887..1668 798..17 3885 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RE 3022 CG3961-RE 1404..2186 798..16 3900 99.9 Minus
CG3961-RD 2649 CG3961-RD 1434..2216 798..16 3900 99.9 Minus
CG3961-RC 3309 CG3961-RC 1691..2473 798..16 3900 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18879802..18880042 558..798 1205 100 Plus
3L 28110227 3L 18879511..18879740 329..558 1135 99.6 Plus
3L 28110227 3L 18879285..18879462 153..330 890 100 Plus
3L 28110227 3L 18879086..18879226 16..156 705 100 Plus
Blast to na_te.dros performed 2015-02-11 12:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 4296..4410 298..414 147 61.9 Plus

BS10640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:42 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PA 1335..2115 17..797 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:36 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PB 888..1668 17..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:15 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 1692..2475 13..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:37:45 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 1692..2475 13..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:37:45 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18879086..18879224 16..154 100 <- Plus
3L 18879287..18879460 155..328 100 <- Plus
3L 18879511..18879739 329..557 99 <- Plus
3L 18879802..18880041 558..797 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:15 Download gff for BS10640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18872186..18872324 16..154 100 <- Plus
arm_3L 18872387..18872560 155..328 100 <- Plus
arm_3L 18872611..18872839 329..557 99 <- Plus
arm_3L 18872902..18873141 558..797 100   Plus

BS10640.5prime Sequence

875 bp (792 high quality bases) assembled on 2006-04-19

> BS10640.5prime
GAAGTTATCAGTCGACATGGCCTACGTCAATCATTTGATTGTCAGCAATT
TTTCATATTTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTC
CCAGGAAGCCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGT
TCCGGAACGACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGG
GTCCAGAACAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGC
AAGTTCGTGTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTT
CCGCGAGGGCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCG
AGACCCTGACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTG
CGTGCCAAGAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAA
GCAGTTGATTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACG
AGCAGGGCTGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACC
CTGGGCCCCGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGT
GGTGATTGTGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGC
CGCGCAGTCTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACC
CTGGAGCGGGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGT
GGAGAAACTAGGTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGG
AGGATCTTTGCACGGTGTGCTACACGTCCGGGACGACGGGCAATCCGAAA
GGCGTGATGCTCACCCACGGCAACG

BS10640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PA 2115 CG3961-RA 126..898 103..875 3815 99.7 Plus
CG3961-PC 2115 CG3961-RC 126..898 103..875 3815 99.7 Plus
CG3961-PB 1668 CG3961-RB 1..451 425..875 2230 99.7 Plus
CG3961-PA 2115 CG3961-RA 22..85 17..80 320 100 Plus
CG3961-PC 2115 CG3961-RC 22..85 17..80 320 100 Plus
CG3961-PA 2115 CG3961-RA 96..124 105..77 145 100 Minus
CG3961-PC 2115 CG3961-RC 96..124 105..77 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 3309 CG3961-RC 379..1255 17..875 3920 96.9 Plus
CG3961-RA 3373 CG3961-RA 443..1319 17..875 3920 96.9 Plus
CG3961-RD 2649 CG3961-RD 321..998 198..875 3375 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18880478..18880981 875..372 2505 99.8 Minus
3L 28110227 3L 18881078..18881253 373..198 880 100 Minus
3L 28110227 3L 18887060..18887157 200..103 475 99 Minus
3L 28110227 3L 18887552..18887598 63..17 235 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:50:02 has no hits.

BS10640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:43 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PC 22..85 17..80 100   Plus
CG3961-PC 126..898 103..875 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:38 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-PA 22..85 17..80 100 == Plus
CG3961-PA 126..898 103..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:49 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..1319 103..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:36 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..1319 103..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:36 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18880478..18880979 374..875 99 <- Minus
3L 18881078..18881251 200..373 100 <- Minus
3L 18887061..18887157 103..199 98 == Minus
3L 18887198..18887215 63..80 100 <- Minus
3L 18887553..18887598 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:49 Download gff for BS10640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18873578..18874079 374..875 99 <- Minus
arm_3L 18874178..18874351 200..373 100 <- Minus
arm_3L 18880161..18880257 103..199 98 == Minus
arm_3L 18880298..18880315 63..80 100 <- Minus
arm_3L 18880653..18880698 17..62 100   Minus

BS10640.complete Sequence

2108 bp assembled on 2007-11-30

> BS10640.complete
GAAGTTATCAGTCGACATGGCCTACGTCAATCATTTGATTGTCAGCAATT
TTTCATATTTCTGGGACGAGATCGATGGGTTAATGTTCCCAAAGTGCCTC
CCAGGAAGCCTGGCATCTAGTGTGGCATACTACTTTGCAACGAGGCCCGT
TCCGGAACGACCGTTAGTGCCTCTGGAGAACCAATCGCCATTGCTAGAGG
GTCCAGAACAAATACACGTCTCCAAGTTCTACAAGGAGTCGAAGAACGGC
AAGTTCGTGTCCTACATCACAGAGAATGTCCGCACCCTGTACCAGACGTT
CCGCGAGGGCGCCTACGCCTCCAACAATGGACCATGTCTTGGCTGGCGCG
AGACCCTGACCTCCCCCTACCAGTGGATCAACTACGACGAGGCCCTGCTG
CGTGCCAAGAACTTTGGAGCCGGAATGCTGGCGCTAGGAGCCAGGCCAAA
GCAGTTGATTGGGATCTACTCGCAGAACCGCCCGGAATGGATCCTGTACG
AGCAGGGCTGCTACTCCTTCTCCTTGGTGGTGGTGCCGCTGTACGACACC
CTGGGCCCCGATGCCTGCGCCTTCATCATACGCCAGACGGATATGCAGGT
GGTGATTGTGGAGGACGATGGCAAGGCGGCCATGCTGTTGGAGAAGGCGC
CGCGCAGTCTGAAGATCATAGTGGCTATCAAGCCCATCCGGCAGACGACC
CTGGAGCGGGCACGCAGCCGAGGCATACAGATATTCTCATTTATCGATGT
GGAGAAACTAGGTGCCAAAGGCAACCATCCGGAGGTGCCGCCGACGGCGG
AGGATCTTTGCACGGTGTGCTACACGTCCGGGACGACGGGCAATCCGAAG
GGCGTGATGCTCACCCACGGCAACGTGGTGGCCGGCGTCTGTTCTGTGAT
CCTGCAGATGGGCGACCATCGCATCCGGGCGGGCGATGTGATGGTGTCAT
TCCTGCCCCTGGCCCACATGTTCGAGCGTTGCTGCGAGAATGGAATGTAC
TATGTGGGCGGCTGTGTGGGCTTCTATTCCGGCGACATCAAGGAATTAAC
CAATGACCTCAAGATGCTGAAACCAACCGTAATGCCGGCAGTGCCTCGTC
TTTTGAACCGCGTCTACGACAAGATTCAGAATGATATCTCAGCGTCTGGA
CTGAAGAGGGGTCTCTTCAATATGGCCATGCGAGCGAAGGAGAAGGAGAT
CGCCAGGGGTGTCCTGCGGAGGAACGGCTGCTGGGACAAGTTGGTCTTCA
AGAAGGTGCATCAGGCCTTTGGCGGAAATCTTCGTTTAATGGTCGTGGGC
TCCGCCCCATTGGCCGGAAATGTCCTGACCTTCATGCGCTGTGCTCTGGG
CTGCCTGGTTCTCGAGGGATATGGCCAAACGGAGTGCACGGGGGCCATTA
CCCTTACCGTTCAGGGAGATCATGTGCCCAACCATGTGGGACCACCCGTG
TCCTGCAATGCTGTGAAACTGGTGGATGTGCCGGAGATGGAGTACTTTGC
CAATCAAAATACTGGCGAGGTGTGTGTGCGCGGATCGAATGTGTTCCATG
GTTACTATAAGGATCCCGAAAAGACGGCGGAGGCCATCGATTCGGAGGGC
TGGCATCATACAGGCGATGTGGGCATGTGGCTGCCAAATGGAACACTACG
GATCATCGATCGCCGCAAGCACATCTTCAAGCTTAGCCAGGGCGAGTACA
TAGTGCCCGAGAAGATCGAGAATATCTACACGCTCAGTCAATACGTAAAT
CAAGTTTATGTCTATGGAGAGAGCTTAAAGAGCTGCATTATCGCTGTTGT
TGTACCTGATACCGATGTACTGAAGCAATGGGCCACGGAGAACAATGTAC
GCGGCACACTCTCCGTCCTGTGCAATAATAAGAATGTCAAGGAACTGATC
ATGAACGACATGCTCAACTGGGGCAAGCAGAGTGGACTCAAGTCATTCGA
ACAGGTTAAAGATATCTATCTGCATCCGGATCCCTTCTCGGTGCAAAACG
GACTGCTGACGCCCACATTCAAAGCCAAGAGACCGCAGCTTAAGAGCTAT
TTTAAGCCCCAGCTGGAGGATATGTATAAACACCTGGATTAAAAGCTTTC
TAGACCAT

BS10640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 2115 CG3961-PC 126..2115 103..2092 9905 99.8 Plus
CG3961-RA 2115 CG3961-PA 126..2115 103..2092 9905 99.8 Plus
CG3961-RD 1965 CG3961-PD 71..1965 198..2092 9445 99.9 Plus
CG3961-RC 2115 CG3961-PC 22..85 17..80 320 100 Plus
CG3961-RA 2115 CG3961-PA 22..85 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-RC 3309 CG3961-RC 483..2473 103..2093 9910 99.8 Plus
CG3961-RA 3373 CG3961-RA 547..2537 103..2093 9910 99.8 Plus
CG3961-RD 2649 CG3961-RD 321..2216 198..2093 9450 99.9 Plus
CG3961-RC 3309 CG3961-RC 379..442 17..80 320 100 Plus
CG3961-RA 3373 CG3961-RA 443..506 17..80 320 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18879802..18880981 1551..372 5885 99.9 Minus
3L 28110227 3L 18879511..18879740 1780..1551 1135 99.6 Minus
3L 28110227 3L 18879285..18879462 1956..1779 890 100 Minus
3L 28110227 3L 18881078..18881253 373..198 880 100 Minus
3L 28110227 3L 18879086..18879226 2093..1953 705 100 Minus
3L 28110227 3L 18887060..18887157 200..103 475 99 Minus
3L 28110227 3L 18887552..18887598 63..17 235 100 Minus
Blast to na_te.dros performed 2014-11-27 10:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy7 5486 gypsy7 GYPSY7 5486bp 4296..4410 1811..1695 147 61.9 Minus

BS10640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:02 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 22..85 17..80 100 == Plus
CG3961-RC 126..2115 103..2092 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:46 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 378..441 17..80 100 == Plus
CG3961-RC 482..2474 103..2096 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:32 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..2534 103..2090 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:23 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RC 378..441 17..80 100 == Plus
CG3961-RC 482..2469 103..2090 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:49 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3961-RA 443..506 17..80 100 == Plus
CG3961-RA 547..2534 103..2090 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:49 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18879287..18879460 1781..1954 100 <- Minus
3L 18879511..18879739 1552..1780 99 <- Minus
3L 18879089..18879224 1955..2090 100 <- Minus
3L 18879802..18880979 374..1551 99 <- Minus
3L 18881078..18881251 200..373 100 <- Minus
3L 18887061..18887157 103..199 98 == Minus
3L 18887198..18887215 63..80 100 <- Minus
3L 18887553..18887598 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:32 Download gff for BS10640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18872611..18872839 1552..1780 99 <- Minus
arm_3L 18872189..18872324 1955..2090 100 <- Minus
arm_3L 18872387..18872560 1781..1954 100 <- Minus
arm_3L 18872902..18874079 374..1551 99 <- Minus
arm_3L 18874178..18874351 200..373 100 <- Minus
arm_3L 18880161..18880257 103..199 98 == Minus
arm_3L 18880298..18880315 63..80 100 <- Minus
arm_3L 18880653..18880698 17..62 100   Minus

BS10640.pep Sequence

Translation from 16 to 2091

> BS10640.pep
MAYVNHLIVSNFSYFWDEIDGLMFPKCLPGSLASSVAYYFATRPVPERPL
VPLENQSPLLEGPEQIHVSKFYKESKNGKFVSYITENVRTLYQTFREGAY
ASNNGPCLGWRETLTSPYQWINYDEALLRAKNFGAGMLALGARPKQLIGI
YSQNRPEWILYEQGCYSFSLVVVPLYDTLGPDACAFIIRQTDMQVVIVED
DGKAAMLLEKAPRSLKIIVAIKPIRQTTLERARSRGIQIFSFIDVEKLGA
KGNHPEVPPTAEDLCTVCYTSGTTGNPKGVMLTHGNVVAGVCSVILQMGD
HRIRAGDVMVSFLPLAHMFERCCENGMYYVGGCVGFYSGDIKELTNDLKM
LKPTVMPAVPRLLNRVYDKIQNDISASGLKRGLFNMAMRAKEKEIARGVL
RRNGCWDKLVFKKVHQAFGGNLRLMVVGSAPLAGNVLTFMRCALGCLVLE
GYGQTECTGAITLTVQGDHVPNHVGPPVSCNAVKLVDVPEMEYFANQNTG
EVCVRGSNVFHGYYKDPEKTAEAIDSEGWHHTGDVGMWLPNGTLRIIDRR
KHIFKLSQGEYIVPEKIENIYTLSQYVNQVYVYGESLKSCIIAVVVPDTD
VLKQWATENNVRGTLSVLCNNKNVKELIMNDMLNWGKQSGLKSFEQVKDI
YLHPDPFSVQNGLLTPTFKAKRPQLKSYFKPQLEDMYKHLD*

BS10640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3961-PC 704 CG3961-PC 8..704 1..691 3604 97.8 Plus
CG3961-PA 704 CG3961-PA 8..704 1..691 3604 97.8 Plus
CG3961-PD 654 CG3961-PD 14..654 51..691 3375 99.1 Plus
CG3961-PE 666 CG3961-PE 14..666 51..691 3352 97.2 Plus
Acsl-PC 707 CG8732-PC 69..705 81..687 793 31.7 Plus