Clone BS10641 Report

Search the DGRC for BS10641

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:41
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS10641.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS10641.5prime Sequence

564 bp (563 high quality bases) assembled on 2006-04-19

> BS10641.5prime
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGTGA
AAGCTTTCTAGACC

BS10641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32341-PA 534 CG32341-RA 1..534 17..550 2620 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 10:20:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797874 17..550 2640 99.6 Plus
Blast to na_te.dros performed 2015-02-11 10:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 88..59 105 83.3 Minus

BS10641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:45 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:42 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:32 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797874 17..550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:32 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797874 17..550 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:27 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797874 17..550 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:27 Download gff for BS10641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797874 17..550 99   Plus

BS10641.3prime Sequence

564 bp (563 high quality bases) assembled on 2006-04-19

> BS10641.3prime
ATGGTCTAGAAAGCTTTCACGAATGTATTGCCCTGAGCCTGTTGGCTTGT
TCAAAAATGTCTACAGCTGGTCGAAATTGATGATGAAAACACCTGCAAAT
TGCAAAACATTGAGTGGAGGAGGGCCTTTTAGCCGAGCCACATCCTCCCA
CATGACCGCGAGGCAATAAGTCAGGAAAGTCGGGTTGCAAAGGCAATGGA
ACAGTCACAGGCACAGGCAACCCTCGCAGCTGGCAGGAAGCCAAATCCTC
GAGAGGGGGAGGACTTTGGCAGCGGGCTGGGGCTCCCCCATGCGACACCT
CCCACATAGCAGCCAGCTGGCTGGTAAGATCCGGCTCATGAATACATTTG
AACTCGTTAACTCCGACACACCCCAACATTTGCTTTTGGGGGTTGTTCCG
AGCGCCGAGCGCCGAGTCCTCGGCCGGGAACTCACTCATCCATCTCGACC
GTCTCGTCCTCCGATTGCCGACCGTGTCCTGGCTTTGCACGTGCACAATT
TCTAGTTCATCAAAAGGAATTTGCTTTTGGGGAGCGTCCTCGTCTGACAT
GTCGACTGATAACT

BS10641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG32341-PA 534 CG32341-RA 1..534 550..17 2620 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 17:09:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797874 550..17 2640 99.6 Minus
Blast to na_te.dros performed 2015-01-31 17:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 479..508 105 83.3 Plus

BS10641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:44 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:40 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32341-PA 1..534 17..550 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:14 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797874 17..550 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:14 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797874 17..550 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:47 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797874 17..550 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:47 Download gff for BS10641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797874 17..550 99   Minus

BS10641.complete Sequence

566 bp assembled on 2006-11-01

> BS10641.complete
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGTGA
AAGCTTTCTAGACCAT

BS10641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:31:29 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 20:31:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 797341..797874 17..550 2640 99.6 Plus
Blast to na_te.dros performed 2014-11-27 20:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
jockey2 3428 jockey2 JOCKEY2 3428bp 70..99 88..59 105 83.3 Minus

BS10641.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:48:04 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:48:04 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:01 Download gff for BS10641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797873 17..549 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:01 Download gff for BS10641.complete
Subject Subject Range Query Range Percent Splice Strand
3L 797341..797873 17..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:00 Download gff for BS10641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797873 17..549 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:00 Download gff for BS10641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 797341..797873 17..549 99   Plus

BS10641.pep Sequence

Translation from 16 to 549

> BS10641.pep
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHS*
Sequence BS10641.pep has no blast hits.