Clone Sequence Records
BS10641.5prime Sequence
564 bp (563 high quality bases) assembled on 2006-04-19
> BS10641.5prime
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGTGA
AAGCTTTCTAGACC
BS10641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32341-PA | 534 | CG32341-RA | 1..534 | 17..550 | 2620 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 10:20:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797874 | 17..550 | 2640 | 99.6 | Plus |
Blast to na_te.dros performed 2015-02-11 10:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 88..59 | 105 | 83.3 | Minus |
BS10641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:45 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:42 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:32 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797874 | 17..550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:19:32 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797874 | 17..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:27 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797874 | 17..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:30:27 Download gff for
BS10641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797874 | 17..550 | 99 | | Plus |
BS10641.3prime Sequence
564 bp (563 high quality bases) assembled on 2006-04-19
> BS10641.3prime
ATGGTCTAGAAAGCTTTCACGAATGTATTGCCCTGAGCCTGTTGGCTTGT
TCAAAAATGTCTACAGCTGGTCGAAATTGATGATGAAAACACCTGCAAAT
TGCAAAACATTGAGTGGAGGAGGGCCTTTTAGCCGAGCCACATCCTCCCA
CATGACCGCGAGGCAATAAGTCAGGAAAGTCGGGTTGCAAAGGCAATGGA
ACAGTCACAGGCACAGGCAACCCTCGCAGCTGGCAGGAAGCCAAATCCTC
GAGAGGGGGAGGACTTTGGCAGCGGGCTGGGGCTCCCCCATGCGACACCT
CCCACATAGCAGCCAGCTGGCTGGTAAGATCCGGCTCATGAATACATTTG
AACTCGTTAACTCCGACACACCCCAACATTTGCTTTTGGGGGTTGTTCCG
AGCGCCGAGCGCCGAGTCCTCGGCCGGGAACTCACTCATCCATCTCGACC
GTCTCGTCCTCCGATTGCCGACCGTGTCCTGGCTTTGCACGTGCACAATT
TCTAGTTCATCAAAAGGAATTTGCTTTTGGGGAGCGTCCTCGTCTGACAT
GTCGACTGATAACT
BS10641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32341-PA | 534 | CG32341-RA | 1..534 | 550..17 | 2620 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-01-31 17:09:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:09:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797874 | 550..17 | 2640 | 99.6 | Minus |
Blast to na_te.dros performed 2015-01-31 17:09:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 479..508 | 105 | 83.3 | Plus |
BS10641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:44 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:40 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32341-PA | 1..534 | 17..550 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:14 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797874 | 17..550 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:14 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797874 | 17..550 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:47 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797874 | 17..550 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:47 Download gff for
BS10641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797874 | 17..550 | 99 | | Minus |
BS10641.complete Sequence
566 bp assembled on 2006-11-01
> BS10641.complete
GAAGTTATCAGTCGACATGTCAGACGAGGACGCTCCCCAAAAGCAAATTC
CTTTTGATGAACTAGAAATTGTGCACGTGCAAAGCCAGGACACGGTCGGC
AATCGGAGGACGAGACGGTCGAGATGGATGAGTGAGTTCCCGGCCGAGGA
CTCGGCGCTCGGCGCTCGGAACAACCCCCAAAAGCAAATGTTGGGGTGTG
TCGGAGTTAACGAGTTCAAATGTATTCATGAGCCGGATCTTACCAGCCAG
CTGGCTGCTATGTGGGAGGTGTCGCATGGGGGAGCCCCAGCCCGCTGCCA
AAGTCCTCCCCCTCTCGAGGATTTGGCTTCCTGCCAGCTGCGAGGGTTGC
CTGTGCCTGTGACTGTTCCATTGCCTTTGCAACCCGACTTTCCTGACTTA
TTGCCTCGCGGTCATGTGGGAGGATGTGGCTCGGCTAAAAGGCCCTCCTC
CACTCAATGTTTTGCAATTTGCAGGTGTTTTCATCATCAATTTCGACCAG
CTGTAGACATTTTTGAACAAGCCAACAGGCTCAGGGCAATACATTCGTGA
AAGCTTTCTAGACCAT
BS10641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 20:31:29 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 20:31:30 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 797341..797874 | 17..550 | 2640 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-27 20:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 70..99 | 88..59 | 105 | 83.3 | Minus |
BS10641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-22 00:48:04 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-22 00:48:04 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:01 Download gff for
BS10641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797873 | 17..549 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:01 Download gff for
BS10641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 797341..797873 | 17..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:00 Download gff for
BS10641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797873 | 17..549 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:00 Download gff for
BS10641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 797341..797873 | 17..549 | 99 | | Plus |
BS10641.pep Sequence
Translation from 16 to 549
> BS10641.pep
MSDEDAPQKQIPFDELEIVHVQSQDTVGNRRTRRSRWMSEFPAEDSALGA
RNNPQKQMLGCVGVNEFKCIHEPDLTSQLAAMWEVSHGGAPARCQSPPPL
EDLASCQLRGLPVPVTVPLPLQPDFPDLLPRGHVGGCGSAKRPSSTQCFA
ICRCFHHQFRPAVDIFEQANRLRAIHS*
Sequence BS10641.pep has no blast hits.