Clone Sequence Records
BS10642.3prime Sequence
895 bp (851 high quality bases) assembled on 2006-04-19
> BS10642.3prime
ATGGTCTAGAAAGCTTCTAACTGCTCTGGGCAGTTACGGGCTTGGTGGGC
GGCGATGATGGCGTGCTGCCAGCGTCCAGAGGCTCCGTTCGTTCCTTTTC
CTTGTTCCAGCTCTTGAGGCCTTCGGGCAGAGTGGTGTCCTCCTCGAAGG
AGCCGGTACCCTCGACGAACTCCTCGTAGGTTGACTTCTCTTTGAAGGGT
CGTGGGCCCAGCAGCTCAATCATATCATCACGGCTGAGCACTTCGTTTTG
GAGCAGTCTTTCCGCCACTTTTTGAACATTCTCCTTGTGCTTGGTCAGCA
GACTAGTGGTGGCCTCGTGGGCACATTTGATAATCGACCTCACCTCGTTG
TCGATCAGCTGCGCTGTGTCCTCCGAGTATGGTTTGCTGAAAACGGGATC
ACCGGCCTGGCCCACATCGAAGCTGACCTGCCCGACCTTCTCGTTCATGC
CGAAACGCACCACCTGGGAGTAGGCAATATCGGTGATCTTCTTTAGATCA
TCCTGAGCACCAGTGGTAATGCGATTAAAGAACAGCTCTTCGGCCACACG
TCCGCCGAGCGTCATGCACATGCGATCGAACAACTGCTCCTTGGACAGCA
AGTAGTGATCCTTGGGCAGATACTGGGCGTAGCCCAGACCCTTGCCGCGT
GGTATAATCGAGACCTTCAGCAGGGGATCTGCGTGCTCCAGGAACCAACC
GGCCACCGCATGGCCAGCCTCGTGGTGTGCCACCGTTCGCTTTTCCTCCG
GCGCCAGAACATTGGTCTTCTTCTCCATGCCAGCGATAACACGCTCAATG
GCCTGCTCGAAGTGCTTGAGTACGATCGAATCCTTGGAGTCGCGGGCGGG
CATCAAAGCAGCTTCGTTGCAAACATTCGCGATGTCAGCGCCTGT
BS10642.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PB | 2094 | CG6512-RB | 1216..2094 | 895..17 | 4345 | 99.7 | Minus |
| CG6512-PA | 2481 | CG6512-RA | 1603..2481 | 895..17 | 4345 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 1863..2741 | 895..17 | 4365 | 99.8 | Minus |
| CG6512-RB | 2816 | CG6512-RB | 1440..2318 | 895..17 | 4365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17239111..17239989 | 17..895 | 4365 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:45:34 has no hits.
BS10642.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:46 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PB | 1216..2094 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:43 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1603..2481 | 17..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:49:41 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RB | 1440..2320 | 13..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:23:03 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RB | 1440..2320 | 13..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:23:03 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17239109..17239989 | 13..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:49:41 Download gff for
BS10642.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17232209..17233089 | 13..895 | 99 | | Plus |
BS10642.5prime Sequence
924 bp (881 high quality bases) assembled on 2006-04-19
> BS10642.5prime
GAAGTTATCAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGA
TGGCCGGAATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAG
GGACAACGCACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCC
CACGGAGCTGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGC
TGTGCAAAAAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGC
AAGTCGTCTGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGC
GGGTTCCAGCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCT
CAGTTAAACCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTC
GGCATGTTCAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTC
GCTGGGCGGACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGC
GGTGGATCCTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTC
GCCTTCTTCGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAA
CAGCTACCTGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGA
AGTGGGTGAGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTC
TTGTGGTTCAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTGGAGGC
AGCCCAGACGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTAATCT
ACCGCAACGAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCCACGTTG
CTCATCATAGGCTTTCTGGTCTATATGATGCGGAAGTCGGCCGATATGAA
TGGGTGGAGGCCGTGGGCGCAAGG
BS10642.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PA | 2481 | CG6512-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
| CG6512-PB | 2094 | CG6512-RB | 1..496 | 404..899 | 2480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..1167 | 16..924 | 4520 | 99.9 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..744 | 354..924 | 2830 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17241217..17241721 | 603..99 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240739..17241063 | 924..599 | 1580 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 101..16 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:53:29 has no hits.
BS10642.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:47 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1..907 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:45 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-PA | 1..907 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:35 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 255..1167 | 11..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:34 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 255..1167 | 11..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:34 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17240739..17241058 | 604..924 | 99 | <- | Minus |
| 3L | 17241217..17241719 | 101..603 | 100 | <- | Minus |
| 3L | 17241785..17241874 | 11..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:35 Download gff for
BS10642.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17233839..17234158 | 604..924 | 99 | <- | Minus |
| arm_3L | 17234317..17234819 | 101..603 | 100 | <- | Minus |
| arm_3L | 17234885..17234974 | 11..100 | 97 | | Minus |
BS10642.complete Sequence
2513 bp assembled on 2007-11-30
> BS10642.complete
GAAGTTATCAGTCGACATGGCGTTCCGGCTGCTTGGCACGGCCAAAACGA
TGGCCGGAATGATGCGGCGCAACTACACGGCGGGTTCCTTGCCGGGAAAG
GGACAACGCACACACATGGGTGCCACGGGCGCCGGGGTTTACATCCTGCC
CACGGAGCTGTCGCCCCTGCTGCGCTACGTGGTCAAACAGATCCAGCTGC
TGTGCAAAAAGCCGCCGAAGGGATTTGAAAAGTATTTCGAAGCCGGCGGC
AAGTCGTCTGGCCAACCGAAGGGATCCGTCGGCGATAAGAAGCCACCCGC
GGGTTCCAGCAAATCCGCCTCGGAGAAGCCCAGCACATCGACACCCGCCT
CAGTTAAACCCAGCAGATCCCAAACAGACGCGAAATCGGACTGGAACTTC
GGCATGTTCAGCAACAGCTCGAGGGGGCCAGCAGGAAAAGGAGGCAACTC
GCTGGGCGGACGACCTCTGGGCGAGAACGGTGGCGGCGGGGACAGGGAGC
GGTGGATCCTTCTGGGTGCCATCGGAGCCGTCGTCCTGGTGGGTTCGTTC
GCCTTCTTCGAGATGGGCTACAAGGAGATCTCGTGGAAGGAGTTCGTCAA
CAGCTACCTGTCGAAGGGCGTCGTGGAGAAGCTGGAGGTGGTTAACAAGA
AGTGGGTGAGAGTGCGTCTGCAGCAGAACAGCAACAGCGGCAGCGGCGTC
TTGTGGTTCAACATCGGCAGTGTCGATAGCTTCGAGCGAAACCTGGAGGC
AGCCCAGACGGAGCAGGGAACGGAATCCATCAACTTTGTGCCCGTAATCT
ACCGCAACGAGGTGGAGGCCGCCAGTCTGACGGGTCTGCTGCCCACGTTG
CTCATCATAGGCTTTCTGGTCTATATGATGCGGAAGTCGGCCGATATGAT
GGGTGGAGGCCGTGGGCGCAAGGGTGGTGGTCTTTTTGGTGGCGTCATGC
AGTCCACCGCAAAGCTAACCAATCCCAATGAGATTGGTGTGGGTTTCAAG
GATGTTGCCGGTTGCGAGGAGGCCAAAATCGAAATCATGGAGTTCGTTAA
CTTCCTGAAGAACCCGCAGCAGTATATTGATTTAGGCGCCAAGATACCGA
AGGGTGCCATGCTAACTGGCCCACCCGGAACGGGTAAAACGCTACTGGCC
AAGGCTACCGCCGGCGAGGCGAATGTACCGTTTATTACCGTGTCGGGATC
CGAGTTCCTCGAGATGTTTGTGGGCGTGGGACCTTCTCGTGTCCGCGACA
TGTTCGCCATGGCCCGAAAGCATGCTCCCTGCATCCTCTTCATCGACGAA
ATCGATGCTGTGGGTCGCAAACGTGGTGGCAAGACCTTCGGTGGCCACTC
GGAGCAAGAGAATACCCTTAACCAGCTTCTGGTGGAAATGGATGGCTTCA
ATACCACTACGAATGTGGTCGTACTGGCCGCCACTAATCGTGTTGATATT
CTGGACAAGGCTCTCATGCGACCAGGTCGTTTCGATCGACAGATTTATGT
ACCAGCACCTGATATTAAGGGCAGGGCGAGCATCTTTAAGGTGCATCTGG
GTAACCTGAAAACGTCGCTGGACAAGAACGAGCTGAGCAGAAAAATGGCT
GCACTGACACCAGGCTTCACAGGCGCTGACATCGCGAATGTTTGCAACGA
AGCTGCTTTGATTGCCGCCCGCGACTCCAAGGATTCGATCGTACTCAAGC
ACTTCGAGCAGGCCATTGAGCGTGTTATCGCTGGCATGGAGAAGAAGACC
AATGTTCTGGCGCCGGAGGAAAAGCGAACGGTGGCACACCACGAGGCTGG
CCATGCGGTGGCCGGTTGGTTCCTGGAGCACGCAGATCCCCTGCTGAAGG
TCTCGATTATACCACGCGGCAAGGGTCTGGGCTACGCCCAGTATCTGCCC
AAGGATCACTACTTGCTGTCCAAGGAGCAGTTGTTCGATCGCATGTGCAT
GACGCTCGGCGGACGTGTGGCCGAAGAGCTGTTCTTTAATCGCATTACCA
CTGGTGCTCAGGATGATCTAAAGAAGATCACCGATATTGCCTACTCCCAG
GTGGTGCGTTTCGGCATGAACGAGAAGGTCGGGCAGGTCAGCTTCGATGT
GGGCCAGGCCGGTGATCCCGTTTTCAGCAAACCATACTCGGAGGACACAG
CGCAGCTGATCGACAACGAGGTGAGGTCGATTATCAAATGTGCCCACGAG
GCCACCACTAGTCTGCTGACCAAGCACAAGGAGAATGTTCAAAAAGTGGC
GGAAAGACTGCTCCAAAACGAAGTGCTCAGCCGTGATGATATGATTGAGC
TGCTGGGCCCACGACCCTTCAAAGAGAAGTCAACCTACGAGGAGTTCGTC
GAGGGTACCGGCTCCTTCGAGGAGGACACCACTCTGCCCGAAGGCCTCAA
GAGCTGGAACAAGGAAAAGGAACGAACGGAGCCTCTGGACGCTGGCAGCA
CGCCATCATCGCCGCCCACCAAGCCCGTAACTGCCCAGAGCAGTTAGAAG
CTTTCTAGACCAT
BS10642.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 2481 | CG6512-PA | 1..2481 | 17..2497 | 12405 | 100 | Plus |
| CG6512-RB | 2094 | CG6512-PB | 1..2094 | 404..2497 | 10470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-RA | 3105 | CG6512-RA | 260..2741 | 16..2497 | 12410 | 100 | Plus |
| CG6512-RB | 2816 | CG6512-RB | 175..2318 | 354..2497 | 10720 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17239111..17240608 | 2497..1000 | 7490 | 100 | Minus |
| 3L | 28110227 | 3L | 17241217..17241721 | 603..99 | 2525 | 100 | Minus |
| 3L | 28110227 | 3L | 17240655..17241063 | 1007..599 | 2015 | 99.5 | Minus |
| 3L | 28110227 | 3L | 17241784..17241869 | 101..16 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:19 has no hits.
BS10642.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:04 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 1..2481 | 17..2497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:48 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 250..2738 | 11..2501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:19 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 261..2741 | 17..2497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:57 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 256..2736 | 17..2497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:04 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6512-RA | 261..2741 | 17..2497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:04 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17239111..17240608 | 1000..2497 | 100 | <- | Minus |
| 3L | 17240663..17241058 | 604..999 | 100 | <- | Minus |
| 3L | 17241217..17241719 | 101..603 | 100 | <- | Minus |
| 3L | 17241785..17241868 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:19 Download gff for
BS10642.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17232211..17233708 | 1000..2497 | 100 | <- | Minus |
| arm_3L | 17233763..17234158 | 604..999 | 100 | <- | Minus |
| arm_3L | 17234317..17234819 | 101..603 | 100 | <- | Minus |
| arm_3L | 17234885..17234968 | 17..100 | 100 | | Minus |
BS10642.pep Sequence
Translation from 16 to 2496
> BS10642.pep
MAFRLLGTAKTMAGMMRRNYTAGSLPGKGQRTHMGATGAGVYILPTELSP
LLRYVVKQIQLLCKKPPKGFEKYFEAGGKSSGQPKGSVGDKKPPAGSSKS
ASEKPSTSTPASVKPSRSQTDAKSDWNFGMFSNSSRGPAGKGGNSLGGRP
LGENGGGGDRERWILLGAIGAVVLVGSFAFFEMGYKEISWKEFVNSYLSK
GVVEKLEVVNKKWVRVRLQQNSNSGSGVLWFNIGSVDSFERNLEAAQTEQ
GTESINFVPVIYRNEVEAASLTGLLPTLLIIGFLVYMMRKSADMMGGGRG
RKGGGLFGGVMQSTAKLTNPNEIGVGFKDVAGCEEAKIEIMEFVNFLKNP
QQYIDLGAKIPKGAMLTGPPGTGKTLLAKATAGEANVPFITVSGSEFLEM
FVGVGPSRVRDMFAMARKHAPCILFIDEIDAVGRKRGGKTFGGHSEQENT
LNQLLVEMDGFNTTTNVVVLAATNRVDILDKALMRPGRFDRQIYVPAPDI
KGRASIFKVHLGNLKTSLDKNELSRKMAALTPGFTGADIANVCNEAALIA
ARDSKDSIVLKHFEQAIERVIAGMEKKTNVLAPEEKRTVAHHEAGHAVAG
WFLEHADPLLKVSIIPRGKGLGYAQYLPKDHYLLSKEQLFDRMCMTLGGR
VAEELFFNRITTGAQDDLKKITDIAYSQVVRFGMNEKVGQVSFDVGQAGD
PVFSKPYSEDTAQLIDNEVRSIIKCAHEATTSLLTKHKENVQKVAERLLQ
NEVLSRDDMIELLGPRPFKEKSTYEEFVEGTGSFEEDTTLPEGLKSWNKE
KERTEPLDAGSTPSSPPTKPVTAQSS*
BS10642.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6512-PA | 826 | CG6512-PA | 1..826 | 1..826 | 4252 | 100 | Plus |
| CG6512-PB | 697 | CG6512-PB | 1..697 | 130..826 | 3581 | 100 | Plus |
| CG2658-PC | 819 | CG2658-PC | 97..819 | 91..796 | 1294 | 40.2 | Plus |
| CG2658-PA | 819 | CG2658-PA | 97..819 | 91..796 | 1294 | 40.2 | Plus |
| CG3499-PC | 740 | CG3499-PC | 280..735 | 304..763 | 954 | 43.7 | Plus |
