Clone BS10646 Report

Search the DGRC for BS10646

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptAcsl-RA
Protein status:BS10646.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10646.3prime Sequence

876 bp (858 high quality bases) assembled on 2006-04-19

> BS10646.3prime
ATGGTCTAGAAAGCTTTCATGAGGCGTACATGCGGTTAATATCATGCTGA
TATCTGTCCTGGATATCCTTGCGCTTCAGCTTGAAGGCGGCGGTTACCAG
CCCCATGTCCGGAGACCAGACCTCCTTACAAAGTGTGATGGCGGCGGGAA
CCTCATATTTTTGCAATTTACATTTCCGCGCATGCTCAGCAATTTCCTTG
AGAATAGCCTTCTCTATGATCGGTGATGAGCACAGCTCCTCAAAGGACTT
ATCACCCAGGCCATGCTTCTGTGCCAGCTCCTCCAAATGGTTTTGGTTGG
GAACGACCAGCGCCACTGTGTACTGCTTTGTCGGATCTCCGTATACGCAA
ATGTTCTCGATGATTCCGCAAGTCTTAAGCTCAGATTCAACTTTGCCAAG
GGAAACATACTCGCCGGCCTGCAGCTTAACCAGATCCTTCTTACGATCAA
TAATCTTAAGTACGCCATCAGCTTGTATTTCGCCAATGTCGCCGGTTTTA
AACCATCTCTGTCCATCCTCCTCAAAGAAATCCTCGTTGGTCTTGCCGGG
CAACTTGTAGTATCCCTGGGAGACACACTCGCCACCAATGAGAACCTCAC
CCTGGGGATAAGGTTTATTTGTGACGCGGTAGTTGCCTTCTTCCCAGTTG
ACTAGACGGATGTCGCAGACAGTTAATGGTCCTCCAGTGCGTCCATAGGT
CATATCACGGTAGTCCATGACAGTGGCTCCAGACGTAGTTTCCGTAAGGC
CATAGCCCTGAATCAGCTCCAAGCACAAGCAGGTCTTGATCTGCTCATGT
GTATCTGCTGACAGAGGCGCTCCGCCAGACATGATAATGCGCACTTTGCC
ACCCATTAGCTTTGCCACCTTCTTGA

BS10646.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8732-PB 2148 l(2)44DEa-RB 1289..2148 876..17 4275 99.8 Minus
CG8732-PC 2124 l(2)44DEa-RC 1265..2124 876..17 4275 99.8 Minus
CG8732-PA 2148 l(2)44DEa-RA 1289..2148 876..17 4275 99.8 Minus
CG8732-PD 2154 l(2)44DEa-RD 1295..2154 876..17 4275 99.8 Minus
CG8732-PE 2148 l(2)44DEa-RE 1289..2148 876..17 4275 99.8 Minus
CG8732-PF 2124 l(2)44DEa-RF 1265..2124 876..17 4275 99.8 Minus
CG8732-PG 2124 l(2)44DEa-RG 1265..2124 876..17 4275 99.8 Minus
CG8732-PH 2148 l(2)44DEa-RH 1289..2148 876..17 4275 99.8 Minus
CG8732-PI 2124 l(2)44DEa-RI 1265..2124 876..17 4275 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-RJ 3061 CG8732-RJ 1468..2330 876..14 4300 99.9 Minus
Acsl-RB 3677 CG8732-RB 1632..2494 876..14 4300 99.9 Minus
Acsl-RC 3117 CG8732-RC 1524..2386 876..14 4300 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8681109..8681389 448..168 1390 99.6 Minus
2R 25286936 2R 8680785..8681048 711..448 1320 100 Minus
2R 25286936 2R 8680557..8680721 876..712 825 100 Minus
2R 25286936 2R 8681447..8681608 175..14 795 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 13:49:20 has no hits.

BS10646.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:53 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8732-PA 1290..2148 17..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:52 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8732-PI 1266..2124 17..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:37:05 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RC 1525..2386 14..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:20 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RC 1525..2386 14..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:20 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8680558..8680721 712..875 100 -> Minus
2R 8680785..8681048 448..711 100 -> Minus
2R 8681110..8681385 172..447 99 -> Minus
2R 8681451..8681608 14..171 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:37:05 Download gff for BS10646.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4568063..4568226 712..875 100 -> Minus
arm_2R 4568290..4568553 448..711 100 -> Minus
arm_2R 4568615..4568890 172..447 99 -> Minus
arm_2R 4568956..4569113 14..171 100   Minus

BS10646.5prime Sequence

882 bp (875 high quality bases) assembled on 2006-04-19

> BS10646.5prime
GAAGTTATCAGTCGACATGTTCATCGAAGACGATGCGCAAATGGACAGCT
TCTGGGTGCAGAGCGCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTAC
GACATCATCACCCTTCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACG
CCGTCAGGACTCGCGTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACA
ATGAGCTGACCTACCGGACCACGGATCCACCACGGGATGTCCACGTGAAG
ATGCTGCAAGAGAATATCGATACCCTGGAGAAGGTATTCAACTATGTGGC
CAAAACTTACACGTCGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCG
AGGAGGATGAGGTGCAGCAGAACGGTCGAGTCTTCAAGAAGTACAACCTC
GGTGACTACAAGTGGAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAA
TTTCGGGCGCGGTCTGCGAGAACTTGGCCAGAAACCACGCGAGAACATTG
TCATCTTTGCCGAAACGCGAGCCGAATGGATGATAGCTGCCCACGGATGC
TTCAAGCAGGCTATGCCCATTGTCACTGTCTATGCTACGCTGGGCGATGA
TGGAGTTGCTCATTGCATCACCGAAACGGAAGTCACCACGGTTATCACCT
CCCATGATCTGCTGCCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTG
GTGAAGACTATTATCTATATTGAGGATCAGCTGCAAAAGACAGAAACCAC
TGGCTTCAAGGAGGGCGTCAAGATCTTGCCGTTTAACCCAGTTGTCAAGA
CAGGACAGGACAGTAAATTTGAGCACGTTCCACCCAAGGGAGATGACATT
GCCATTATCATGTACACTTCCGGATCCACTGG

BS10646.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8732-PB 2148 l(2)44DEa-RB 1..866 17..882 4280 99.7 Plus
CG8732-PA 2148 l(2)44DEa-RA 1..866 17..882 4280 99.7 Plus
CG8732-PE 2148 l(2)44DEa-RE 1..866 17..882 4280 99.7 Plus
CG8732-PH 2148 l(2)44DEa-RH 1..866 17..882 4280 99.7 Plus
CG8732-PD 2154 l(2)44DEa-RD 30..872 40..882 4165 99.7 Plus
CG8732-PC 2124 l(2)44DEa-RC 1..842 41..882 4160 99.7 Plus
CG8732-PF 2124 l(2)44DEa-RF 1..842 41..882 4160 99.7 Plus
CG8732-PG 2124 l(2)44DEa-RG 1..842 41..882 4160 99.7 Plus
CG8732-PI 2124 l(2)44DEa-RI 1..842 41..882 4160 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:52:33
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-RB 3677 CG8732-RB 344..1209 17..882 4300 99.8 Plus
Acsl-RH 3887 CG8732-RH 554..1419 17..882 4300 99.8 Plus
Acsl-RA 3704 CG8732-RA 371..1236 17..882 4300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8678428..8678869 174..615 2195 99.8 Plus
2R 25286936 2R 8678928..8679134 615..821 1020 99.5 Plus
2R 25286936 2R 8676472..8676608 40..176 685 100 Plus
2R 25286936 2R 8680011..8680072 821..882 310 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:52:30 has no hits.

BS10646.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:54 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8732-PH 1..866 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:53 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8732-PB 1..866 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:31 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 364..1236 9..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:57 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 364..1236 9..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:57 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8676472..8676607 40..175 100 -> Plus
2R 8678430..8678868 176..614 99 -> Plus
2R 8678928..8679134 615..821 99 -> Plus
2R 8680012..8680072 822..882 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:31 Download gff for BS10646.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4563977..4564112 40..175 100 -> Plus
arm_2R 4565935..4566373 176..614 99 -> Plus
arm_2R 4566433..4566639 615..821 99 -> Plus
arm_2R 4567517..4567577 822..882 100   Plus

BS10646.complete Sequence

2180 bp assembled on 2007-11-30

GenBank Submission: FJ636701

> BS10646.complete
GAAGTTATCAGTCGACATGTTCATCGAAGACGATGCGCAAATGGACAGCT
TCTGGGTGCAGAGCGCTATTGGCGCGATCAAGGCGATCGCCTTTGTCTAC
GACATCATCACCCTTCCGGTTTACTTGGTGCTGCAGAAGCCCTGGAAACG
CCGTCAGGACTCGCGTCGCGTGAAGGCAAAGATCGTGCGGAATGATGACA
ATGAGCTGACCTACCGGACCACGGATCCACCACGGGATGTCCACGTGAAG
ATGCTGCAAGAGAATATCGATACCCTGGAGAAGGTATTCAACTATGTGGC
CAAAACTTACACGTCGAAGCGTTGTCTGGGCACCCGGCAGATCCTCAGCG
AGGAGGATGAGGTGCAGCAGAACGGTCGAGTCTTCAAGAAGTACAACCTC
GGTGACTACAAGTGGAAGACGTTCACCGAGGCGGAGCGCACGGCGGCTAA
TTTCGGGCGCGGTCTGCGAGAACTTGGCCAGAAACCACGCGAGAACATTG
TCATCTTTGCCGAAACGCGAGCCGAATGGATGATAGCTGCCCACGGATGC
TTCAAGCAGGCTATGCCCATTGTCACTGTCTATGCTACGCTGGGCGATGA
TGGAGTTGCTCATTGCATCACCGAAACGGAAGTCACCACGGTTATCACCT
CCCATGATCTGCTGCCCAAGTTTAAGACGCTGCTCGACAAATGCCCATTG
GTGAAGACTATTATCTATATTGAGGATCAGCTGCAAAAGACAGAAACCAC
TGGCTTCAAGGAGGGCGTCAAGATCTTGCCGTTTAACCAAGTTGTCAAGA
CAGGACAGGACAGTAAATTTGAGCACGTTCCACCCAAGGGAGATGACATT
GCCATTATCATGTACACTTCCGGATCCACTGGCACACCTAAGGGTGTCCT
CCTCTCGCACAAGAACTGCATTGCGACAATGAAGGGATTTGTTGATATGG
TGCCTATCTATCCGGATGATGTACTGATCGGATTCCTGCCCCTGGCTCAC
GTTTTTGAATTGGTTGCGGAAAGTGTGTGTCTCATGACTGGCGTTCCAAT
TGGCTACTCGACCCCCTTGACTCTGATCGACACTAGCAGCAAGATCAAAC
GCGGGTGCAAGGGCGATGCCACCGTCCTGAAGCCCACCTGCATGACTTCG
GTGCCGCTGATATTGGATCGCATTTCCAAGGGTATTAACGACAAGGTTAA
CTCTGGCTCGGCGTTCAAGAAATCACTCTTCAAATTCCTTTACCAGTACA
AAGTCAAGTGGGTGCAGAGGGGGTACAAGACGCCGCTGATTGATAAACTG
GTGTTCAAGAAGGTGGCAAAGCTAATGGGTGGCAAAGTGCGCATTATCAT
GTCTGGCGGAGCGCCTCTGTCAGCAGATACACATGAGCAGATCAAGACCT
GCTTGTGCTTGGAGCTGATTCAGGGCTATGGCCTTACGGAAACTACGTCT
GGAGCCACTGTCATGGACTACCGTGATATGACCTATGGACGCACTGGAGG
ACCATTAACTGTCTGCGACATCCGTCTAGTCAACTGGGAAGAAGGCAACT
ACCGCGTCACAAATAAACCTTATCCCCAGGGTGAGGTTCTCATTGGTGGC
GAGTGTGTCTCCCAGGGATACTACAAGTTGCCCGGCAAGACCAACGAGGA
TTTCTTTGAGGAGGATGGACAGAGATGGTTTAAAACCGGCGACATTGGCG
AAATACAAGCTGATGGCGTACTTAAGATTATTGATCGTAAGAAGGATCTG
GTTAAGCTGCAGGCCGGCGAGTATGTTTCCCTTGGCAAAGTTGAATCTGA
GCTTAAGACTTGCGGAATCATCGAGAACATTTGCGTATACGGAGATCCGA
CAAAGCAGTACACAGTGGCGCTGGTCGTTCCCAACCAAAACCATTTGGAG
GAGCTGGCACAGAAGCATGGCCTGGGTGATAAGTCCTTTGAGGAGCTGTG
CTCATCACCGATCATAGAGAAGGCTATTCTCAAGGAAATTGCTGAGCATG
CGCGGAAATGTAAATTGCAAAAATATGAGGTTCCCGCCGCCATCACACTT
TGTAAGGAGGTCTGGTCTCCGGACATGGGGCTGGTAACCGCCGCCTTCAA
GCTGAAGCGCAAGGATATCCAGGACAGATATCAGCATGATATTAACCGCA
TGTACGCCTCATGAAAGCTTTCTAGACCAT

BS10646.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-RB 2148 CG8732-PB 1..2148 17..2164 10710 99.9 Plus
Acsl-RH 2148 CG8732-PH 1..2148 17..2164 10710 99.9 Plus
Acsl-RA 2148 CG8732-PA 1..2148 17..2164 10710 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-RB 3677 CG8732-RB 344..2494 17..2167 10725 99.9 Plus
Acsl-RH 3887 CG8732-RH 554..2704 17..2167 10725 99.9 Plus
Acsl-RA 3704 CG8732-RA 371..2521 17..2167 10725 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8680011..8680486 821..1296 2380 100 Plus
2R 25286936 2R 8678428..8678869 174..615 2195 99.8 Plus
2R 25286936 2R 8681109..8681389 1733..2013 1390 99.6 Plus
2R 25286936 2R 8680785..8681048 1470..1733 1320 100 Plus
2R 25286936 2R 8678928..8679134 615..821 1035 100 Plus
2R 25286936 2R 8680549..8680721 1297..1469 865 100 Plus
2R 25286936 2R 8681447..8681608 2006..2167 795 99.4 Plus
2R 25286936 2R 8676472..8676608 40..176 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:44:56 has no hits.

BS10646.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:05 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)44DEa-RE 1..2148 17..2164 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:50 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)44DEa-RE 239..2396 9..2167 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:30:50 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 376..2517 22..2163 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:50:10 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)44DEa-RE 251..2392 22..2163 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:37:14 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
Acsl-RA 376..2517 22..2163 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:37:14 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8676472..8676607 40..175 100 -> Plus
2R 8674854..8674871 22..39 100 -> Plus
2R 8678430..8678868 176..614 99 -> Plus
2R 8678928..8679134 615..821 100 -> Plus
2R 8680012..8680486 822..1296 100 -> Plus
2R 8680549..8680721 1297..1469 100 -> Plus
2R 8680785..8681048 1470..1733 100 -> Plus
2R 8681110..8681385 1734..2009 99 -> Plus
2R 8681451..8681604 2010..2163 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:30:50 Download gff for BS10646.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4562359..4562376 22..39 100 -> Plus
arm_2R 4563977..4564112 40..175 100 -> Plus
arm_2R 4565935..4566373 176..614 99 -> Plus
arm_2R 4566433..4566639 615..821 100 -> Plus
arm_2R 4567517..4567991 822..1296 100 -> Plus
arm_2R 4568054..4568226 1297..1469 100 -> Plus
arm_2R 4568290..4568553 1470..1733 100 -> Plus
arm_2R 4568615..4568890 1734..2009 99 -> Plus
arm_2R 4568956..4569109 2010..2163 100   Plus

BS10646.pep Sequence

Translation from 16 to 2163

> BS10646.pep
MFIEDDAQMDSFWVQSAIGAIKAIAFVYDIITLPVYLVLQKPWKRRQDSR
RVKAKIVRNDDNELTYRTTDPPRDVHVKMLQENIDTLEKVFNYVAKTYTS
KRCLGTRQILSEEDEVQQNGRVFKKYNLGDYKWKTFTEAERTAANFGRGL
RELGQKPRENIVIFAETRAEWMIAAHGCFKQAMPIVTVYATLGDDGVAHC
ITETEVTTVITSHDLLPKFKTLLDKCPLVKTIIYIEDQLQKTETTGFKEG
VKILPFNQVVKTGQDSKFEHVPPKGDDIAIIMYTSGSTGTPKGVLLSHKN
CIATMKGFVDMVPIYPDDVLIGFLPLAHVFELVAESVCLMTGVPIGYSTP
LTLIDTSSKIKRGCKGDATVLKPTCMTSVPLILDRISKGINDKVNSGSAF
KKSLFKFLYQYKVKWVQRGYKTPLIDKLVFKKVAKLMGGKVRIIMSGGAP
LSADTHEQIKTCLCLELIQGYGLTETTSGATVMDYRDMTYGRTGGPLTVC
DIRLVNWEEGNYRVTNKPYPQGEVLIGGECVSQGYYKLPGKTNEDFFEED
GQRWFKTGDIGEIQADGVLKIIDRKKDLVKLQAGEYVSLGKVESELKTCG
IIENICVYGDPTKQYTVALVVPNQNHLEELAQKHGLGDKSFEELCSSPII
EKAILKEIAEHARKCKLQKYEVPAAITLCKEVWSPDMGLVTAAFKLKRKD
IQDRYQHDINRMYAS*

BS10646.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:58
Subject Length Description Subject Range Query Range Score Percent Strand
Acsl-PB 715 CG8732-PB 1..715 1..715 3748 100 Plus
Acsl-PH 715 CG8732-PH 1..715 1..715 3748 100 Plus
Acsl-PA 715 CG8732-PA 1..715 1..715 3748 100 Plus
Acsl-PE 715 CG8732-PE 1..715 1..715 3748 100 Plus
Acsl-PC 707 CG8732-PC 1..707 9..715 3707 100 Plus