Clone Sequence Records
BS10647.3prime Sequence
887 bp (771 high quality bases) assembled on 2006-04-19
> BS10647.3prime
ATGGTCTAGAAAGCTTCTACGAGTTGACAGGATTAACCTGGGCCAGCGGG
GATGGTCCTCCAACGGCGCCACCACCACGAATGGCGATTGCACCTTGGCC
GGACCGGATCGGCTTTGCGATCTGTGCCTGTGGGCCACGTCTGCCCAGAT
GCTTCTGTCGCACCGCCTCCTTGATGCGGTCCACCTCGTATTGGTAGCGC
TTGCGATCCCGCATTGCGCCCTCCTTCGCCTCCTTGAGCGCTGTCTCCAG
AGCTTTCACCCGCTCCATGGTACAGCGTAGACGCTTCTCCAGCTTGGGCA
GCTCGCACCGCAGATCGGCGTTGTCCCGCACCAATTGCTTGTGCACCTTG
GTCAGCTGGTCGAGGTTGTTCTCCAAGAAGGAAATCTTCTGTTTCTGCGC
GAGTGATCCACCGTCCTCCTCGCTCTCCTCGTTTACGACATTCTTTCGGA
TTCGTTGCTGTAGATCCTGAACGAAAAGTTTTCGAAGGTTGTGTAGCGTC
TGCAACTCCTTGGCCACCGTGTCCTCCAGGCCCTTGAGGTCTTTGCGCGC
TTGCTCCCGACGCTCGTTGGTGAGGATGATGTTCTGAAGCTCGCTGGACT
TCTCGGCATCCTCCTGGCGAACCTTCTCGTAGTCGGCCGTCATCTGTTGG
TGCGCCAAGAGCAGCTTCTGATGGACATCCTTCATCTCGTCCATTTCGTG
CTGCTTGGCGGCAATCTCGTCCCGGAGCTCGGACACCTGCCGGGTGTGGG
CTTCGCGTAGCTCGTCCATCTGAGAATCGAACATGGAGCGCAGCTCCTCA
GCCCGCTGTTTCTCCTCGGCGTTAACGGCGGAAACGTGCTCGGCGGGCTT
GAGCTTGGCGCACTCCTCGCGCAGCGAATCGATTTGC
BS10647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7765-PA | 2928 | Khc-RA | 2059..2928 | 886..17 | 4150 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 2545..3415 | 886..16 | 4235 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:35:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16267263..16267708 | 16..461 | 2200 | 99.6 | Plus |
| 2R | 25286936 | 2R | 16267776..16268204 | 458..886 | 2055 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:35:35 has no hits.
BS10647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:55 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-PA | 2058..2928 | 17..887 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:54 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7765-PA | 2058..2928 | 17..887 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:07 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 2544..3422 | 9..887 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:25 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 2544..3422 | 9..887 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:25 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16267256..16267704 | 9..457 | 98 | <- | Plus |
| 2R | 16267776..16268204 | 458..887 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:07 Download gff for
BS10647.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12154761..12155209 | 9..457 | 98 | <- | Plus |
| arm_2R | 12155281..12155709 | 458..887 | 98 | | Plus |
BS10647.5prime Sequence
948 bp (799 high quality bases) assembled on 2006-04-19
> BS10647.5prime
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACNAGTCGCTGTCGGCCTTGGGCAACGTAATTTCTGCCCTGGCGGACGGA
AACAAAACGCACATCCCCTACCGTGATTCCAAGCTAACGCGCATCCTGCA
GGAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTC
BS10647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7765-PA | 2928 | Khc-RA | 1..932 | 17..948 | 4566 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:31:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 487..1418 | 17..948 | 4604 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16269794..16270254 | 623..163 | 2305 | 100 | Minus |
| 2R | 25286936 | 2R | 16269331..16269655 | 948..624 | 1569 | 98.8 | Minus |
| 2R | 25286936 | 2R | 16271338..16271485 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:30:58 has no hits.
BS10647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:56 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:08:56 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7765-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:45:38 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1418 | 10..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:43:29 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 483..1418 | 10..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:43:29 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16271339..16271489 | 10..163 | 98 | | Minus |
| 2R | 16269331..16269655 | 624..948 | 98 | <- | Minus |
| 2R | 16269794..16270253 | 164..623 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:45:38 Download gff for
BS10647.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12158844..12158994 | 10..163 | 98 | | Minus |
| arm_2R | 12156836..12157160 | 624..948 | 98 | <- | Minus |
| arm_2R | 12157299..12157758 | 164..623 | 100 | <- | Minus |
BS10647.complete Sequence
2960 bp assembled on 2007-11-30
GenBank Submission: FJ636702
> BS10647.complete
GAAGTTATCAGTCGACATGTCCGCGGAACGAGAGATTCCCGCCGAGGACA
GCATCAAAGTGGTCTGCCGATTCCGACCGCTGAACGACAGCGAAGAGAAG
GCCGGCTCCAAGTTCGTGGTCAAGTTCCCCAACAATGTGGAGGAGAACTG
CATATCCATAGCGGGCAAGGTGTATTTGTTCGACAAGGTCTTCAAACCGA
ATGCATCCCAGGAGAAGGTCTACAATGAGGCGGCCAAGTCCATTGTTACG
GATGTCCTGGCCGGGTACAATGGAACGATATTCGCATATGGTCAGACGTC
CTCCGGAAAAACGCATACGATGGAGGGCGTGATCGGGGACTCCGTAAAAC
AGGGTATCATACCACGTATCGTCAACGACATTTTCAATCACATCTACGCG
ATGGAGGTGAACCTGGAGTTTCACATCAAGGTCTCCTACTACGAGATCTA
CATGGACAAGATTCGAGATCTGTTGGACGTCTCCAAGGTGAACTTAAGCG
TGCACGAGGACAAGAACCGGGTGCCGTACGTCAAGGGCGCTACGGAACGG
TTCGTCTCGTCGCCGGAGGATGTTTTCGAGGTGATCGAGGAGGGCAAATC
CAATCGTCACATCGCTGTGACAAACATGAACGAGCATTCTTCGCGATCCC
ACTCAGTATTCCTTATCAATGTGAAGCAGGAGAACCTGGAGAACCAGAAG
AAACTATCCGGCAAACTCTACCTGGTGGATTTGGCCGGTTCCGAGAAGGT
TTCCAAGACTGGAGCGGAGGGAACCGTTCTTGATGAAGCCAAGAACATCA
ACAAGTCGCTGTCGGCCTTGGGCAACGTAATTTCTGCCCTGGCGGACGGA
AACAAAACGCACATCCCCTACCGTGATTCCAAGCTAACGCGCATCCTGCA
GGAGTCGCTGGGAGGCAACGCACGCACAACCATCGTCATCTGCTGCTCTC
CAGCCAGTTTCAACGAATCTGAAACGAAGTCAACGCTGGACTTCGGTCGT
AGAGCCAAGACAGTGAAGAACGTGGTCTGCGTTAACGAGGAGCTTACTGC
CGAGGAATGGAAGCGACGCTATGAAAAGGAGAAGGAAAAGAACGCCCGAC
TAAAGGGTAAGGTGGAGAAGCTGGAGATCGAGCTTGCGCGCTGGAGAGCG
GGTGAAACCGTTAAGGCGGAGGAGCAAATCAACATGGAGGATCTCATGGA
GGCAAGCACGCCCAACCTGGAAGTGGAGGCAGCACAGACGGCGGCGGCCG
AGGCCGCTTTGGCCGCCCAGCGAACGGCTCTCGCCAACATGTCCGCATCG
GTTGCCGTGAACGAGCAGGCCAGGCTGGCTACAGAGTGCGAGCGTCTCTA
CCAGCAGCTGGACGACAAGGATGAGGAGATCAATCAGCAGAGCCAGTACG
CCGAGCAGCTCAAGGAGCAGGTGATGGAGCAGGAGGAACTCATCGCTAAC
GCTCGGCGTGAGTATGAGACTTTGCAGTCGGAGATGGCGCGAATCCAACA
GGAGAACGAGTCCGCCAAGGAAGAGGTTAAAGAGGTGCTCCAAGCTCTCG
AAGAGCTGGCTGTAAACTACGACCAGAAATCCCAGGAGATCGATAACAAG
AACAAGGATATCGATGCCCTCAACGAGGAGCTGCAGCAGAAGCAGTCTGT
GTTCAACGCCGCCTCCACAGAGCTACAGCAGCTCAAGGACATGTCCTCAC
ACCAGAAGAAGCGCATCACGGAAATGCTAACCAACCTACTGCGCGACCTC
GGCGAAGTGGGCCAGGCCATTGCCCCCGGCGAGTCCAGCATCGACCTTAA
GATGAGTGCTCTGGCTGGCACGGATGCCAGCAAGGTGGAGGAAGATTTCA
CCATGGCGCGTTTGTTTATCAGCAAGATGAAGACGGAGGCCAAGAACATT
GCCCAGCGATGCTCTAACATGGAAACACAGCAGGCTGACTCCAACAAGAA
GATCTCCGAATATGAGAAAGATCTGGGCGAGTACCGGCTTCTCATTTCGC
AGCACGAGGCACGCATGAAGTCGCTGCAGGAGTCGATGCGGGAGGCAGAA
AACAAGAAGCGTACGCTCGAGGAGCAAATCGATTCGCTGCGCGAGGAGTG
CGCCAAGCTCAAGGCCGCCGAGCACGTTTCCGCCGTTAACGCCGAGGAGA
AACAGCGGGCTGAGGAGCTGCGCTCCATGTTCGATTCTCAGATGGACGAG
CTACGCGAAGCCCACACCCGGCAGGTGTCCGAGCTCCGGGACGAGATTGC
CGCCAAGCAGCACGAAATGGACGAGATGAAGGATGTCCATCAGAAGCTGC
TCTTGGCGCACCAACAGATGACGGCCGACTACGAGAAGGTTCGCCAGGAG
GATGCCGAGAAGTCCAGCGAGCTTCAGAACATCATCCTCACCAACGAGCG
TCGGGAGCAAGCGCGCAAAGACCTCAAGGGCCTGGAGGACACGGTGGCCA
AGGAGTTGCAGACGCTACACAACCTTCGAAAACTTTTCGTTCAGGATCTA
CAGCAACGAATCCGAAAGAATGTCGTAAACGAGGAGAGCGAGGAGGACGG
TGGATCACTCGCGCAGAAACAGAAGATTTCCTTCTTGGAGAACAACCTCG
ACCAGCTGACCAAGGTGCACAAGCAATTGGTGCGGGACAACGCCGATCTG
CGGTGCGAGCTGCCCAAGCTGGAGAAGCGTCTACGCTGTACCATGGAGCG
GGTGAAAGCTCTGGAGACAGCGCTCAAGGAGGCGAAGGAGGGCGCAATGC
GGGATCGCAAGCGCTACCAATACGAGGTGGACCGCATCAAGGAGGCGGTG
CGACAGAAGCATCTGGGCAGACGTGGCCCACAGGCACAGATCGCAAAGCC
GATCCGGTCCGGCCAAGGTGCAATCGCCATTCGTGGTGGTGGCGCCGTTG
GAGGACCATCCCCGCTGGCCCAGGTTAATCCTGTCAACTCGTAGAAGCTT
TCTAGACCAT
BS10647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 2928 | CG7765-PA | 1..2928 | 17..2944 | 14325 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-RA | 3718 | CG7765-RA | 487..3415 | 17..2945 | 14330 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16267776..16269655 | 2503..624 | 9115 | 99 | Minus |
| 2R | 25286936 | 2R | 16269794..16270254 | 623..163 | 2305 | 100 | Minus |
| 2R | 25286936 | 2R | 16267263..16267708 | 2945..2500 | 2200 | 99.6 | Minus |
| 2R | 25286936 | 2R | 16271338..16271485 | 164..17 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:54 has no hits.
BS10647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:06 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 1..2928 | 17..2944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:52 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 490..3429 | 10..2952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:23 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 487..3414 | 17..2944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:00 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 494..3421 | 17..2944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:48 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Khc-RA | 487..3414 | 17..2944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:48 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16267264..16267704 | 2504..2944 | 99 | <- | Minus |
| 2R | 16267776..16269655 | 624..2503 | 98 | <- | Minus |
| 2R | 16269794..16270253 | 164..623 | 100 | <- | Minus |
| 2R | 16271339..16271485 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:23 Download gff for
BS10647.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12154769..12155209 | 2504..2944 | 99 | <- | Minus |
| arm_2R | 12155281..12157160 | 624..2503 | 98 | <- | Minus |
| arm_2R | 12157299..12157758 | 164..623 | 100 | <- | Minus |
| arm_2R | 12158844..12158990 | 17..163 | 100 | | Minus |
BS10647.pep Sequence
Translation from 16 to 2943
> BS10647.pep
MSAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG
KVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTH
TMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIR
DLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIA
VTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSKTGA
EGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGG
NARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKR
RYEKEKEKNARLKGKVEKLEIELARWRAGETVKAEEQINMEDLMEASTPN
LEVEAAQTAAAEAALAAQRTALANMSASVAVNEQARLATECERLYQQLDD
KDEEINQQSQYAEQLKEQVMEQEELIANARREYETLQSEMARIQQENESA
KEEVKEVLQALEELAVNYDQKSQEIDNKNKDIDALNEELQQKQSVFNAAS
TELQQLKDMSSHQKKRITEMLTNLLRDLGEVGQAIAPGESSIDLKMSALA
GTDASKVEEDFTMARLFISKMKTEAKNIAQRCSNMETQQADSNKKISEYE
KDLGEYRLLISQHEARMKSLQESMREAENKKRTLEEQIDSLREECAKLKA
AEHVSAVNAEEKQRAEELRSMFDSQMDELREAHTRQVSELRDEIAAKQHE
MDEMKDVHQKLLLAHQQMTADYEKVRQEDAEKSSELQNIILTNERREQAR
KDLKGLEDTVAKELQTLHNLRKLFVQDLQQRIRKNVVNEESEEDGGSLAQ
KQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRCTMERVKALE
TALKEAKEGAMRDRKRYQYEVDRIKEAVRQKHLGRRGPQAQIAKPIRSGQ
GAIAIRGGGAVGGPSPLAQVNPVNS*
BS10647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Khc-PA | 975 | CG7765-PA | 1..975 | 1..975 | 4865 | 100 | Plus |
| Klp68D-PB | 784 | CG7293-PB | 18..574 | 11..555 | 733 | 34.2 | Plus |
| Klp68D-PA | 784 | CG7293-PA | 18..574 | 11..555 | 733 | 34.2 | Plus |
| Klp64D-PA | 677 | CG10642-PA | 19..546 | 11..575 | 718 | 34.9 | Plus |
| Klp61F-PA | 1066 | CG9191-PA | 9..876 | 2..875 | 702 | 28 | Plus |
