Clone BS10649 Report

Search the DGRC for BS10649

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptCG5541-RA
Protein status:BS10649.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10649.3prime Sequence

906 bp (849 high quality bases) assembled on 2006-04-19

> BS10649.3prime
ATGGTCTAGAAAGCTTCTACAAATCAGTCTTTAGCAGGCCAGCGTTCTCG
ATTTGGTATACGATCTGGGTTTCCTTGTAAGTGCGCGGTTCCGGCTGCAC
TACGTCCAGCTTACGACGTCGTCGCTTTTGGACTACTCGCCACCACAGCA
AAAGGATCAGGAGGAGCAGCAGTAGTCCCAGAAGAACACTACCCGAGATA
ATAAAGGCCATGTAGCTGCGCTCGCGGCACTCATCCGTGATCAGGGATCG
AAGTGGGATATACGGCTGGATTTGGCCTTGTCCGCCAAAATCGGGCGGAT
GGAACATCAGTTGATCGCTGTGCAGTCGGAAGAACTCCGCTCGCGGCAAT
GGTGGCTCCACATTCCTGTCCAGCTGTTCACAGCTCCAGGCATTATTATA
GCGGATATCGCGTACATTGAGCGCGAAGCTATTGTCGAATTGAAGGGGTT
GTGGTGCCACATTCTCGGCGGTGCCATCGACCCGAGGATCTGCACCTGGT
CGCGAGCTGCGCAGACTGTTGTTGTGGAAACGCAGCTCCAGACGCTCGCT
CAACTGATACGAACGATGAACGGTGAGGCTGCGAAACGCAATCTCACTTG
TGGCCCCGAATTCGTTTCCTCGTATTGTCGCCGCATCTCTGATTTGGGCT
TCCAACCACTCACCATCGACGGATAGGAAATGATTATCACTCAGGCTTAA
CTTGGAGACAAGCTTGAAGGAGAAGGCATGGGAGTGGACCTCCTGGAACT
GATTACCTCGCAGACTCAGCTCGTTGGTCACCTCGAGCTCGTAGAAGGCA
CGCGTGGGCAGATCGCCCAGGAATTGGCAATTGGCGATGCTCATCTGCTC
CACGGCGAATTTCTTAAAGGCTTGACTCTCGATGCGCTGAATGGTGACCC
CGTCCA

BS10649.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PA 1392 CG5541-RA 503..1392 906..17 4450 100 Minus
CG5541-PB 1392 CG5541-RB 503..1392 906..17 4450 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 682..1572 906..16 4455 100 Minus
CG5541-RA 2514 CG5541-RA 892..1782 906..16 4455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15050415..15051110 711..16 3480 100 Minus
X 23542271 X 15050200..15050359 871..712 800 100 Minus
Blast to na_te.dros performed 2015-02-11 12:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 649..701 114 70.4 Plus

BS10649.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:45:59 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PA 504..1392 17..905 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:00 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PB 504..1392 17..905 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:07 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 908..1797 16..905 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:31:41 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 893..1782 16..905 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:31:41 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15050105..15050138 872..905 100 -> Minus
X 15050200..15050359 712..871 100 -> Minus
X 15050415..15051110 16..711 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:07 Download gff for BS10649.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14944138..14944171 872..905 100 -> Minus
arm_X 14944233..14944392 712..871 100 -> Minus
arm_X 14944448..14945143 16..711 100   Minus

BS10649.5prime Sequence

894 bp (868 high quality bases) assembled on 2006-04-19

> BS10649.5prime
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATCAGTTGAGCGAGCGTCTGGAGCTGCG

BS10649.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PA 1392 CG5541-RA 1..878 17..894 4390 100 Plus
CG5541-PB 1392 CG5541-RB 1..878 17..894 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 179..1057 16..894 4395 100 Plus
CG5541-RA 2514 CG5541-RA 389..1267 16..894 4395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15049758..15050139 173..554 1910 100 Plus
X 23542271 X 15050415..15050595 714..894 905 100 Plus
X 23542271 X 15049106..15049265 16..175 800 100 Plus
X 23542271 X 15050200..15050359 554..713 800 100 Plus
Blast to na_te.dros performed 2015-02-13 08:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 776..724 114 70.4 Minus

BS10649.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:00 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PA 1..878 17..894 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:01 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-PB 1..878 17..894 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:19 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 400..1282 9..894 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:35:40 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 385..1267 9..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:35:40 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15049102..15049265 9..175 97 -> Plus
X 15049761..15050138 176..553 100 -> Plus
X 15050200..15050359 554..713 100 -> Plus
X 15050415..15050595 714..894 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:19 Download gff for BS10649.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14943135..14943298 9..175 97 -> Plus
arm_X 14943794..14944171 176..553 100 -> Plus
arm_X 14944233..14944392 554..713 100 -> Plus
arm_X 14944448..14944628 714..894 100   Plus

BS10649.complete Sequence

1424 bp assembled on 2006-11-01

GenBank Submission: FJ636703

> BS10649.complete
GAAGTTATCAGTCGACATGCGGAATATCAGAAATCTCAAGGATCCGACGA
CATGGACGCGGATTCTCCTGCCGTTCCTCTCCTGCCTACTCCTCGCTGTC
CAGGCGGATCTGGTGAATGTCACCTGCGGGGAGTATGGCAATACCATCAC
TTGCGACTGCAATAACTCCGACCAGACCATGGCTTTGCCATCGTTGCGCG
GAAATGTCTACATGATTGAGATCCGCAATTGCCGCGATCTTCTGGTGGAG
GCCAATCGGCTGGCGAACACGATGGGCCTGCACAAGGTGGTCTTCCGCCA
GGTGGGCCAACTGGTGCTCCGGGAGCACGCGCTCAGTGTGCCGCGATATG
CCAGCAATAAGGCACTGATCGTGGAGTTCGAGCAGACGAACCTCAAGCTG
ATCGAATCGCATGCCATCAACGGCAACATCGAGGAGATCTCATTCGTGGG
CGGGCGGATTGAGCTAATGAAGCCTTTCGGATTCACCACCACCAAGGATA
GTGCCATACTGCTCAAGCTGGACGGGGTCACCATTCAGCGCATCGAGAGT
CAAGCCTTTAAGAAATTCGCCGTGGAGCAGATGAGCATCGCCAATTGCCA
ATTCCTGGGCGATCTGCCCACGCGTGCCTTCTACGAGCTCGAGGTGACCA
ACGAGCTGAGTCTGCGAGGTAATCAGTTCCAGGAGGTCCACTCCCATGCC
TTCTCCTTCAAGCTTGTCTCCAAGTTAAGCCTGAGTGATAATCATTTCCT
ATCCGTCGATGGTGAGTGGTTGGAAGCCCAAATCAGAGATGCGGCGACAA
TACGAGGAAACGAATTCGGGGCCACAAGTGAGATTGCGTTTCGCAGCCTC
ACCGTTCATCGTTCGTATCAGTTGAGCGAGCGTCTGGAGCTGCGTTTCCA
CAACAACAGTCTGCGCAGCTCGCGACCAGGTGCAGATCCTCGGGTCGATG
GCACCGCCGAGAATGTGGCACCACAACCCCTTCAATTCGACAATAGCTTC
GCGCTCAATGTACGCGATATCCGCTATAATAATGCCTGGAGCTGTGAACA
GCTGGACAGGAATGTGGAGCCACCATTGCCGCGAGCGGAGTTCTTCCGAC
TGCACAGCGATCAACTGATGTTCCATCCGCCCGATTTTGGCGGACAAGGC
CAAATCCAGCCGTATATCCCACTTCGATCCCTGATCACGGATGAGTGCCG
CGAGCGCAGCTACATGGCCTTTATTATCTCGGGTAGTGTTCTTCTGGGAC
TACTGCTGCTCCTCCTGATCCTTTTGCTGTGGTGGCGAGTAGTCCAAAAG
CGACGACGTCGTAAGCTGGACGTAGTGCAGCCGGAACCGCGCACTTACAA
GGAAACCCAGATCGTATACCAAATCGAGAACGCTGGCCTGCTAAAGACTG
ATTTGTAGAAGCTTTCTAGACCAT

BS10649.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 1392 CG5541-PB 1..1392 17..1408 6960 100 Plus
CG5541-RA 1392 CG5541-PA 1..1392 17..1408 6960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-RB 2304 CG5541-RB 179..1572 16..1409 6970 100 Plus
CG5541-RA 2514 CG5541-RA 389..1782 16..1409 6970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15050415..15051110 714..1409 3480 100 Plus
X 23542271 X 15049758..15050139 173..554 1910 100 Plus
X 23542271 X 15049106..15049265 16..175 800 100 Plus
X 23542271 X 15050200..15050359 554..713 800 100 Plus
Blast to na_te.dros performed 2014-11-27 07:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy10 6006 gypsy10 GYPSY10 6006bp 5301..5354 776..724 114 70.4 Minus

BS10649.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:17 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1..1392 17..1408 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:55 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1607..3004 9..1409 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:55 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 405..1796 17..1408 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:17 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RB 1607..3004 9..1409 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:16 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
CG5541-RA 390..1781 17..1408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:16 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
X 15049107..15049265 17..175 100 -> Plus
X 15049761..15050138 176..553 100 -> Plus
X 15050200..15050359 554..713 100 -> Plus
X 15050415..15051109 714..1408 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:55 Download gff for BS10649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14943140..14943298 17..175 100 -> Plus
arm_X 14943794..14944171 176..553 100 -> Plus
arm_X 14944233..14944392 554..713 100 -> Plus
arm_X 14944448..14945142 714..1408 100   Plus

BS10649.pep Sequence

Translation from 16 to 1407

> BS10649.pep
MRNIRNLKDPTTWTRILLPFLSCLLLAVQADLVNVTCGEYGNTITCDCNN
SDQTMALPSLRGNVYMIEIRNCRDLLVEANRLANTMGLHKVVFRQVGQLV
LREHALSVPRYASNKALIVEFEQTNLKLIESHAINGNIEEISFVGGRIEL
MKPFGFTTTKDSAILLKLDGVTIQRIESQAFKKFAVEQMSIANCQFLGDL
PTRAFYELEVTNELSLRGNQFQEVHSHAFSFKLVSKLSLSDNHFLSVDGE
WLEAQIRDAATIRGNEFGATSEIAFRSLTVHRSYQLSERLELRFHNNSLR
SSRPGADPRVDGTAENVAPQPLQFDNSFALNVRDIRYNNAWSCEQLDRNV
EPPLPRAEFFRLHSDQLMFHPPDFGGQGQIQPYIPLRSLITDECRERSYM
AFIISGSVLLGLLLLLLILLLWWRVVQKRRRRKLDVVQPEPRTYKETQIV
YQIENAGLLKTDL*

BS10649.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5541-PB 463 CG5541-PB 1..463 1..463 2384 100 Plus
CG5541-PA 463 CG5541-PA 1..463 1..463 2384 100 Plus