Clone BS10650 Report

Search the DGRC for BS10650

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG3964-RA
Protein status:BS10650.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10650.3prime Sequence

843 bp (825 high quality bases) assembled on 2006-04-19

> BS10650.3prime
ATGGTCTAGAAAGCTTTCATCCTTTCGCACGTGCAGCATATCGATCTCGG
TAAGTGCAACATTTGGTTCCTAGATAAGAAATATGACTTGAAAATGGACT
ACAGAAGCGGTACGGAAGGGGAAATTCAATTGAATTGAATTGATCGTTCA
CCTTTTCCATGGCGGCGTCCGACACCTGTAAATGGTATTTGTCCCGGCAA
TAGCGCGACAGCAAGGCAATGCCCATTTCCCGATTCTTGGCGTACTTCGT
CTCCCACGCGTCCAGCAGGCGATTATAGTACCGGGCATTCTCGACATAGC
GCAGATATACATGTGTGCCGGCGGTGGGGAAGATCCGTTCCAGCGGCTGA
CACCTGGCCAGCTCGTCCTCGGCAACGATTAGGCAACGCACATCGTCCGG
CAGTAGATTGTCCAGTATGGTATCAACGTACTCCTCCCGGAATTCGATGC
TCCTGTTGGTGTACTGGTTATGTTTGCGGACCTCCTCTGCAGTCAGGCAG
GTGGTGAAGATGCGTTTGTCATGGCACAACGGACCGGTCAGATTAAGCTC
CTCCAGGATGTCCGCCTGCTGACGTTCGTTCAGCTTAGGCGGCACCTGAT
ATAGAGCCGTATTCAGCACGGCCTGAATGAGCGGACCCTTCACGTGCAGA
TCCAGTGGCAATTCCGAATGCAACGACGGCGATATATTTATCTCCAGCAG
CCAGGGCACTAGATTCTCATCCAGGAGCACATCGAAGCCAAACAACTCGA
AGCAATTGTAGCGAAAGTTCACATTCTGGCGGTACATGCGATTCAATCCC
GATTCCCCGCTCACGATGCCCTTGATGACCAGATTCCGTAGCG

BS10650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-PA 2949 CG3964-RA 2123..2949 843..17 3960 99.1 Minus
CG3964-PB 2970 CG3964-RB 2123..2815 843..151 3290 98.9 Minus
CG3964-PB 2970 CG3964-RB 2813..2867 71..17 275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-RA 3516 CG3964-RA 2307..3133 843..17 4030 99.2 Minus
CG3964-RC 3518 CG3964-RC 2388..3080 843..151 3360 99 Minus
CG3964-RB 3437 CG3964-RB 2307..2999 843..151 3360 99 Minus
CG3964-RC 3518 CG3964-RC 3078..3132 71..17 275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3866295..3867121 843..17 4030 99.2 Minus
Blast to na_te.dros performed on 2015-02-03 16:40:20 has no hits.

BS10650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:01 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-PA 2123..2949 17..843 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:03 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-PA 2123..2949 17..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:09 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 2307..3139 11..843 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:21 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 2307..3139 11..843 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:21 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3866295..3867127 11..843 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:09 Download gff for BS10650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3866295..3867127 11..843 98   Minus

BS10650.5prime Sequence

924 bp (863 high quality bases) assembled on 2006-04-19

> BS10650.5prime
GAAGTTATCAGTCGACATGGCTCAGATGACCGAGAAGAGGACAACGTCGG
CCCGATCTGGTACTGCCGCCAAGGAGAACCACAGCCTGACGGGAAGGCAG
AACCAGCAGAATCATCACAATCAGGGACACCAGCGCAGCGGCAAGGGCAT
CGAGATACTCGACTTCCACGAATCGTGGCTGGAGGAGGTTGAGCTGTACA
AGGACAAGATGGTCATGTGCAAGAAGCTGGCCCATCACAATCACGTGCCC
GCCTCATCGCACCACCTGCAGCCGCACCTGGCCGCCCCGAATCGAAATCA
TGGCAGAATCGTCCAGTCCAGCACCCCGCAGCATCGCAGCTCAGCCGGCG
GAGGATCCGCGGCTGGAGCCACAGCATCCGATTCCGTCTCGGCTCGCTAC
TCGCCGCCTGGTCAAAAGCAAAGATCACCGCCCTCGCCGCGCAAACGGCT
GACGCCGGAGAAGGTGGCCAACCTAGGAGGAGGAGGCGGTGGCTCAAAGG
TAGGCGCGCAGCGCATCATCATCCGTGGAACGCCACCCAACAGCTCCACA
CCCAAGGTAGCCGCCACGCCCTCAAATGTTCCCGTCGTGGCCAACAGTGT
GCTCCAATCGGAGCCGTACAAGAAAGTCCAGATGCTATTGAAGCGCGCAA
GGGAGGAGGCCTTCGCCAAGCACACGGCTGGCAATTCAGCCGCGAATGGC
AACGGACCCAAGCGCTCCGCCCACAGTCCGCCCATTCAGGCCAAGGTACC
GCCGTCGAACATGTCCTGCCCAAGCACCCAGACGCTTAAGCCGTCGCCGC
CCAGCAAGATTGTGGTGAACTCGTTCCACGGCAGCAGCATGCTGAGCACG
CAGCAACAGGAGGAGAAGAGCAGACTCCTCACCCAAAACGGGCTGACCAA
GTCGGCGGCCACCGCTTTGGAACG

BS10650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-PB 2970 CG3964-RB 1..906 17..922 4355 99.2 Plus
CG3964-PA 2949 CG3964-RA 1..906 17..922 4355 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-RC 3518 CG3964-RC 266..1171 17..922 4425 99.2 Plus
CG3964-RA 3516 CG3964-RA 185..1090 17..922 4425 99.2 Plus
CG3964-RB 3437 CG3964-RB 185..1090 17..922 4425 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3863581..3864195 17..631 2970 98.9 Plus
2L 23513712 2L 3864539..3864832 629..922 1470 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:36:40 has no hits.

BS10650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:02 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-PB 1..909 17..924 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:05 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-PA 1..909 17..924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:47:51 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-RB 180..1093 12..924 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:35 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3964-RB 180..1093 12..924 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:35 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3863576..3864195 12..631 98 -> Plus
2L 3864542..3864835 632..924 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:47:51 Download gff for BS10650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3863576..3864195 12..631 98 -> Plus
arm_2L 3864542..3864835 632..924 99   Plus

BS10650.complete Sequence

2981 bp assembled on 2007-11-30

GenBank Submission: FJ636704

> BS10650.complete
GAAGTTATCAGTCGACATGGCTCAGATGACCGAGAAGAGGACAACGTCGG
CCCGATCTGGTACTGCCGCCAAGGAGAACCACAGCCTGACGGGAAGGCAG
AACCAGCAGAATCATCACAATCAGGGACACCAGCGCAGCGGCAAGGGCAT
CGAGATACTCGACTTCCACGAATCGTGGCTGGAGGAGGTTGAGCTGTACA
AGGACAAGATGGTCATGTGCAAGAAGCTGGCCCATCACAATCACGTGCCC
GCCTCATCGCACCACCTGCAGCCGCACCTGGCCGCCCCGAATCGAAATCA
TGGCAGAATCGTCCAGTCCAGCACCCCGCAGCATCGCAGCTCAGCCGGCG
GAGGATCCGCGGCTGGAGCCACAGCATCCGATTCCGTCTCGGCTCGCTAC
TCGCCGCCTGGTCAAAAGCAAAGATCACCGCCCTCGCCGCGCAAACGGCT
GACGCCGGAGAAGGTGGCCAACCTAGGAGGAGGAGGCGGTGGCTCAAAGG
TAGGCGCGCAGCGCATCATCATCCGTGGAACGCCACCCAACAGCTCCACA
CCCAAGGTAGCCGCCACGCCCTCAAATGTTCCCGTCGTGGCCAACAGTGT
GCTCCAATCGGAGCCGTACAAGAAAGTCCAGATGCTATTGAAGCGCGCAA
GGGAGGAGGCCTTCGCCAAGCACACGGCTGGCAATTCAGCCGCGAATGGC
AACGGACCCAAGCGCTCCGCCCACAGTCCGCCCATTCAGGCCAAGGTACC
GCCGTCGAACATGTCCTGCCCAAGCACCCAGACGCTTAAGCCGTCGCCGC
CCAGCAAGATTGTGGTGAACTCGTTCCACGGCAGCAGCATGCTGAGCACG
CAGCAACAGGAGGAGAAGAGCAGACTCCTCACCCAAAACGGGCTGACCAA
GTCGGCGGCCACCGCTTTGGAAACGAGTCTCTACGCCTCGCTGTACGCCA
ATGCGCCACAGAACAGCCAGCCGCAGTTCCATAGCCCGCGGATTTCCGGA
GGAGATCACGTCGCGTCCTATGTGGGCGTCTCACTGAACAAGGGAGCCGG
ACACGATAACGACAGGAAGCACGAAGATGATCCGTGCGCAGCCATCGACG
ATATTAACTACTACGACGATTCAGACTCGGAGGAGGAGTATGTGGGCACG
CCATTCTTTCTGGAGGAGGACAACACGGAGACGCGCCAGAGCAAGCACAC
TCGATTGCTGCCGCAAAAGACACCATCGAAGGAATCTGTGCGCACCACGG
ACTCGGAGGCGTCTGTCTATTTCCGTCCGGAGGCCATACTCTCGCCCAGT
CTCTTCCCGCACGTTCCGCCGTACCTGAACTTTACGTCCCACGCGGACAA
GGGTCCTCCAATGCCGGCAGCATTGCATCGAGTGCTCAAATGGAAACTCA
GCCCCGTGATGCCGAAGATTGTCAAGCGAGTGGTGCTCAATTCGGGCTTC
CGCATCATCAAGAACACCACCGACTGGATGGCCGTGTGGGAGAAGCACAT
GAAGAGCCCCGGGTTTAGGACCATTCGATCGCACCAGAAGTACAACCACA
TACCCGGATCGTTCCGCATCGGTAGAAAAGACACCATGTGGCGCAGCATC
TACAACAATATGAAGAAGTTCGGCAAGAAGGAGTTTGGCTTTATGCAAAA
ATCCTACATTATGCCAGACGATCTGGAGAGCCTGCGTCAGGTGTGGCCCA
AAAATGCCTCGAAGCTGACCAAGTGGATTGTTAAGCCGCCGGCGAGTGCC
CGAGGCACGGGCATACGCATTGTGAACAAGTGGAGCCAATTTCCCAAAGA
TCGTCCTCTGGTGGTTCAGAAATACATTGAACGTCCGCTGTTGATTAACG
ACAATAAGTTCGATATGCGTCTGTATGTGGTACTGACCTCAATCAACCCA
CTCCGCATCTATATGTACAAGGATGGACTGGCGCGTTTCGCGTCCGTTAA
GTACAGCTCGGAGCTGAGCAATCTGGACGAGCGCTGCATGCACCTGACCA
ACTACAGCATCAACAAGTTCTCGCAGAACTATGCGAAGAACGAGGATTTC
AATGCCTGCCAGGGCCACAAGTGGACGCTTCAATCGCTGTGGTCCTGCCT
GGAGAATCGTGGCGTGAACACTAAGCGCCTGTGGGCCACGCTACGGAATC
TGGTCATCAAGGGCATCGTGAGCGGGGAATCGGGATTGAATCGCATGTAC
CGCCAGAATGTGAACTTTCGCTACAATTGCTTCGAGTTGTTTGGCTTCGA
TGTGCTCCTGGATGAGAATCTAGTGCCCTGGCTGCTGGAGATAAATATAT
CGCCGTCGTTGCATTCGGAATTGCCACTGGATCTGCACGTGAAGGGTCCG
CTCATTCAGGCCGTGCTGAATACGGCTCTATATCAGGTGCCGCCTAAGCT
GAACGAACGTCAGCAGGCGGACATCCTGGAGGAGCTTAATCTGACCGGTC
CGTTGTGCCATGACAAACGCATCTTCACCACCTGCCTGACTGCAGAGGAG
GTCCGCAAACATAACCAGTACACCAACAGGAGCATCGAATTCCGGGAGGA
GTACGTTGATACCATACTGGACAATCTACTGCCGGACGATGTGCGTTGCC
TAATCGTTGCCGAGGACGAGCTGGCCAGGTGTCAGCCGCTGGAACGGATC
TTCCCCACCGCCGGCACACATGTATATCTGCGCTATGTCGAGAATGCCCG
GTACTATAATCGCCTGCTGGACGCGTGGGAGACGAAGTACGCCAAGAATC
GGGAAATGGGCATTGCCTTGCTGTCGCGCTATTGCCGGGACAAATACCAT
TTACAGGTGTCGGACGCCGCCATGGAAAAGGTGAACGATCAATTCAATTC
AATTGAATTTCCCCTTCCGTACCGCTTCTGTAGTCCATTTTCAAGTCATA
TTTCTTATCTAGGAACCAAATGTTGCACTTACCGAGATCGATATGCTGCA
CGTGCGAAAGGATGAAAGCTTTCTAGACCAT

BS10650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-RA 2949 CG3964-PA 1..2949 17..2965 14475 99.4 Plus
CG3964-RC 2970 CG3964-PC 1..2815 17..2831 13805 99.4 Plus
CG3964-RB 2970 CG3964-PB 1..2815 17..2831 13805 99.4 Plus
CG3964-RC 2970 CG3964-PC 2813..2867 2911..2965 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-RA 3516 CG3964-RA 185..3133 17..2965 14475 99.4 Plus
CG3964-RC 3518 CG3964-RC 266..3080 17..2831 13805 99.4 Plus
CG3964-RB 3437 CG3964-RB 185..2999 17..2831 13805 99.4 Plus
CG3964-RC 3518 CG3964-RC 3078..3132 2911..2965 275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3865978..3867121 1822..2965 5585 99.2 Plus
2L 23513712 2L 3863581..3864195 17..631 2970 98.9 Plus
2L 23513712 2L 3864539..3865001 629..1091 2315 100 Plus
2L 23513712 2L 3865057..3865432 1088..1463 1865 99.7 Plus
2L 23513712 2L 3865498..3865684 1464..1650 920 99.5 Plus
2L 23513712 2L 3865747..3865917 1651..1821 855 100 Plus
2L 23513712 2L 10993036..10993164 1988..2116 255 79.8 Plus
Blast to na_te.dros performed on 2014-11-28 01:01:34 has no hits.

BS10650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:10 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 1..2949 17..2965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:43:54 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 167..3126 12..2971 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:04:53 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 185..3132 17..2964 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:48 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 172..3119 17..2964 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:14 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
CG3964-RA 185..3132 17..2964 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:14 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3863581..3864195 17..631 98 -> Plus
2L 3864542..3865001 632..1091 100 -> Plus
2L 3865061..3865432 1092..1463 99 -> Plus
2L 3865498..3865684 1464..1650 99 -> Plus
2L 3865747..3865917 1651..1821 100 -> Plus
2L 3865978..3867120 1822..2964 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:04:53 Download gff for BS10650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3863581..3864195 17..631 98 -> Plus
arm_2L 3864542..3865001 632..1091 100 -> Plus
arm_2L 3865061..3865432 1092..1463 99 -> Plus
arm_2L 3865498..3865684 1464..1650 99 -> Plus
arm_2L 3865747..3865917 1651..1821 100 -> Plus
arm_2L 3865978..3867120 1822..2964 99   Plus

BS10650.pep Sequence

Translation from 16 to 2964

> BS10650.pep
MAQMTEKRTTSARSGTAAKENHSLTGRQNQQNHHNQGHQRSGKGIEILDF
HESWLEEVELYKDKMVMCKKLAHHNHVPASSHHLQPHLAAPNRNHGRIVQ
SSTPQHRSSAGGGSAAGATASDSVSARYSPPGQKQRSPPSPRKRLTPEKV
ANLGGGGGGSKVGAQRIIIRGTPPNSSTPKVAATPSNVPVVANSVLQSEP
YKKVQMLLKRAREEAFAKHTAGNSAANGNGPKRSAHSPPIQAKVPPSNMS
CPSTQTLKPSPPSKIVVNSFHGSSMLSTQQQEEKSRLLTQNGLTKSAATA
LETSLYASLYANAPQNSQPQFHSPRISGGDHVASYVGVSLNKGAGHDNDR
KHEDDPCAAIDDINYYDDSDSEEEYVGTPFFLEEDNTETRQSKHTRLLPQ
KTPSKESVRTTDSEASVYFRPEAILSPSLFPHVPPYLNFTSHADKGPPMP
AALHRVLKWKLSPVMPKIVKRVVLNSGFRIIKNTTDWMAVWEKHMKSPGF
RTIRSHQKYNHIPGSFRIGRKDTMWRSIYNNMKKFGKKEFGFMQKSYIMP
DDLESLRQVWPKNASKLTKWIVKPPASARGTGIRIVNKWSQFPKDRPLVV
QKYIERPLLINDNKFDMRLYVVLTSINPLRIYMYKDGLARFASVKYSSEL
SNLDERCMHLTNYSINKFSQNYAKNEDFNACQGHKWTLQSLWSCLENRGV
NTKRLWATLRNLVIKGIVSGESGLNRMYRQNVNFRYNCFELFGFDVLLDE
NLVPWLLEINISPSLHSELPLDLHVKGPLIQAVLNTALYQVPPKLNERQQ
ADILEELNLTGPLCHDKRIFTTCLTAEEVRKHNQYTNRSIEFREEYVDTI
LDNLLPDDVRCLIVAEDELARCQPLERIFPTAGTHVYLRYVENARYYNRL
LDAWETKYAKNREMGIALLSRYCRDKYHLQVSDAAMEKVNDQFNSIEFPL
PYRFCSPFSSHISYLGTKCCTYRDRYAARAKG*

BS10650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3964-PA 982 CG3964-PA 1..982 1..982 5209 100 Plus
CG3964-PC 989 CG3964-PC 1..938 1..938 4963 100 Plus
CG3964-PB 989 CG3964-PB 1..938 1..938 4963 100 Plus
CG16833-PM 827 CG16833-PM 110..817 221..947 1902 50.8 Plus
CG16833-PK 827 CG16833-PK 110..817 221..947 1902 50.8 Plus