Clone BS10652 Report

Search the DGRC for BS10652

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG17646-RA
Protein status:BS10652.pep: full length peptide match
Sequenced Size:2333

Clone Sequence Records

BS10652.complete Sequence

2333 bp assembled on 2009-12-07

GenBank Submission: KX802670

> BS10652.complete
GAAGTTATCAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATG
CCGCTTGCTGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGC
GTCTGCAGCCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGG
CATCAACTGTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGA
CGTCATCGACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACC
AACGACCTGAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCA
TGCCAACTTCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGC
GCTACACAGTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAG
GAGATCCTTCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGC
CATCATGGGTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGT
CCGGATTTTGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAG
CCCATGGCTCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCA
CCAGGACGATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGATAATGCTGC
TGGCGGCACATCTGAAGCTGGGCTTCAAGGTCACCAAGGCGTACAAAATG
GATCTGATCAAACACATCTTATCGCTGCTGGGTCTGGACCATCGCTACAA
TGTGCCCACTGGGAAGCTTTCGGGTGGCCAGAAGAAGCGACTCGCAATCG
CCCTGGAGCTGATAAGTAATCCTCCCGTGCTATATCTGGATGAGCCGACG
ACTGGCCTGGACAGCTCCTCGTGCAGCTCCTGCGTGGCTCTGCTGAAGAA
ACTGGCGTCGCAGGGCCACACGATAGTCTGCACCATCCATCAGCCGAGTG
CCCTGATCTTCGAGATGTTCGACAAGCTCTACACCGTCGTCGATGGCCAC
TGCATGTACCAAGGACCTGTGCGCGAACTGGTGCCCTTCCTGGCCGACCA
GCAGCTCGTCTGCCCGAGTTACCACAACCCAGCTGACTATCTACTGGAAG
TGGCCGTGGGCGAGCATCAACGTGACCTGAATGAGCTAATCCATGCGGCC
AATAAAAAGTATTACGAGGATGTGGATCGCCATAGGTATATGAGCAGTGA
TGATATGGCACGCCTCGTGGAAAGCATTAAAGAAAACATGGGCGGCAAGG
CAGTGGTAAAAACCAGTGAAGCGCTGGCAGCATTTGCGGCGGCGCAATTC
TCCAGCTTCGACTATGTAAAGCCCTCGCCGCAGGAGCTGGCTCTGGAGGA
GATCAAGGCACTGAGCGGCGGCCCCGAGAGCGCGGATCCCGATCTCCTCG
AGAAAAATCTGAGGCCACAGCCACAGCCGCTTGCCAAAGCCGGTGAGCTT
GCCAGGCCGCCGAATGCCATTCGATCGGCCTCGTTCCTCATGCAGTATGT
GCTCCTGATGCAGCGCATCTTGATCTGCGCCAAGCGAAACTACTTTCTGC
TGCTGGCCCGCATCTTCTCGCACATTTTCATCGGAGTCGTCTTCGGGTAT
CTGTACATGAACGTGGGCAACAATGCCCAGAGTGTGCTGGGAAACTACGT
GTATCTGTACGGCTCCACGCTGCTCTTGGTCTACACCGGTAAAATGGCTG
TGGTCTTGACATTTCCGCTGGAAATTGACATGTTGACACGGGAGCACTTC
AACCGCTGGTACAAACTGGGTCCCTACTTCCTCTCGCTGATCTCCTTCGA
AATACCCTTCCAGAGCCTCTGCACCGCCATGTACATTATCATTAGCGTGC
ATCTGACTGGAAACGATGCCACGGACTCATTCCGGATCTACTACTTCATG
CTGCTGGGCATAATGGCCTCTTTGAGTGCCCAAGCCTGGGGCTTCTTCGT
GGGAGCCACGTTGCCAACCAAGCTTGCCGTGTTTCTGGGACCCATTCTGG
CGGTGATGTTCTCCGTTTTTGGATTCTGCACGCGCTACATCGACATCACG
CCCCTCTTCCGATGGATGTGGCACCTGAGTTACTTCCGGGCCGGATTCCA
CGGGGCGTTGAACGCCATTTACGGCATGGATCGACCCTTTCTGGAGTGCC
CCGAGACTGCGATGTATTGCCACTTCCGCAGCCCGAAGGTCTTTCTCAAG
TACATGATGATATCGGATGTGCACATGTCCGACTGCCTGATCCTCATGGG
CATCGTGATTGGAGTCATGCATGTGCTGACCCTCATCACGCTGTGGCACA
AGCTCAACAAGCGATAGAAGCTTTCTAGACCAT

BS10652.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 2301 CG17646-PA 1..2300 17..2316 11305 99.4 Plus
CG17646-RB 2301 CG17646-PB 1..2300 17..2316 11305 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 593..2894 15..2316 11315 99.4 Plus
CG17646-RB 2999 CG17646-RB 171..2472 15..2316 11315 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1741699..1742076 15..392 1815 98.7 Plus
2L 23513712 2L 1749740..1750085 1971..2316 1730 100 Plus
2L 23513712 2L 1745717..1746029 1231..1543 1550 99.7 Plus
2L 23513712 2L 1744923..1745161 853..1091 1165 99.2 Plus
2L 23513712 2L 1743344..1743540 510..706 955 99 Plus
2L 23513712 2L 1747692..1747860 1544..1712 845 100 Plus
2L 23513712 2L 1749515..1749676 1811..1972 795 99.4 Plus
2L 23513712 2L 1743633..1743779 706..852 720 99.3 Plus
2L 23513712 2L 1745221..1745361 1092..1232 705 100 Plus
2L 23513712 2L 1742142..1742260 392..510 595 100 Plus
2L 23513712 2L 1748774..1748874 1713..1813 490 99 Plus
Blast to na_te.dros performed on 2014-11-28 02:19:09 has no hits.

BS10652.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:16 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RA 593..2892 17..2317 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:20 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 173..2472 17..2317 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:10:31 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RA 593..2892 17..2317 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:51 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 173..2472 17..2317 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:51 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1743634..1743779 707..852 99 -> Plus
2L 1749518..1749676 1814..1972 99 -> Plus
2L 1743345..1743540 511..706 98 -> Plus
2L 1749742..1750085 1973..2317 99   Plus
2L 1741701..1742076 17..392 98 -> Plus
2L 1742143..1742260 393..510 100 -> Plus
2L 1744923..1745161 853..1091 99 -> Plus
2L 1745221..1745361 1092..1232 100 -> Plus
2L 1745719..1746029 1233..1543 99 -> Plus
2L 1747692..1747860 1544..1712 100 -> Plus
2L 1748774..1748874 1713..1813 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:20 Download gff for BS10652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1749518..1749676 1814..1972 99 -> Plus
arm_2L 1749742..1750085 1973..2317 99   Plus
arm_2L 1741701..1742076 17..392 98 -> Plus
arm_2L 1742143..1742260 393..510 100 -> Plus
arm_2L 1743345..1743540 511..706 98 -> Plus
arm_2L 1743634..1743779 707..852 99 -> Plus
arm_2L 1744923..1745161 853..1091 99 -> Plus
arm_2L 1745221..1745361 1092..1232 100 -> Plus
arm_2L 1745719..1746029 1233..1543 99 -> Plus
arm_2L 1747692..1747860 1544..1712 100 -> Plus
arm_2L 1748774..1748874 1713..1813 99 -> Plus

BS10652.3prime Sequence

894 bp (784 high quality bases) assembled on 2006-04-19

> BS10652.3prime
ATGGTCTAGAAAGCTTCTATCGCTTGTTGAGCTTGTGCCACAGCGTGATG
AGGGTCAGCACATGCATGACTCCAATCACGATGCCCATGAGGATCAGGCA
GTCGGACATGTGCACATCCGATATCATCATGTACTTGAGAAAGACCTTCG
GGCTGCGGAAGTGGCAATACATCGCAGTCTCGGGGCACTCCAGAAAGGGT
CGATCCATGCCGTAAATGGCGTTCAACGCCCCGTGGAATCCGGCCCGGAA
GTAACTCAGGTGCCACATCCATCGGAAGAGGGGCGTGATGTCGATGTAGC
GCGTGCAGAATCCAAAAACGGAGAACATCACCGCCAGAATGGGTCCCAGA
AACACGGCAAGCTTGGTTGGCAACGTGGCTCCCACGAAGAAGCCCCAGGC
TTGGGCACTCAAAGAGGCCATTATGCCCAGCAGCATGAAGTAGTAGATCC
GGAATGAGTCCGTGGCATCGTTTCCAGTCAGATGCACGCTAATGATAATG
TACATGGCGGTGCAGAGGCTCTGGAAGGGTATTTCGAAGGAGATCAGCGA
GAGGAAGTAGGGACCCAGTTTGTACCAGCGGTTGAAGTGCTCCCGTGTCA
ACATGTCAATTTCCAGCGGAAATGTCAAGACCACAGCCATTTTACCGGTG
TAGACCAAGAGCAGCGTGGAGCCGTACAGATACACGTAGTTTCCCAGCAC
ACTCTGGGCATTGTTGCCCACGTTCATGTACAGATACCCGAAGACGACTC
CGATGAAAATGTGCGAGAAGATGCGGGCCAGCAGCAGAAAGTAGTTTCGC
TTGGCGCAGATCAAGATGCGCTGCATCAGGAGCACATACTGCATGAGGAA
CGAGGCCGATCGAATGGCATTCGGCGGCCCTGCAAGCTCACCGG

BS10652.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PB 2301 CG17646-RB 1424..2300 894..18 4260 99.4 Minus
CG17646-PA 2301 CG17646-RA 1424..2300 894..18 4260 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 2018..2894 894..18 4310 99.4 Minus
CG17646-RB 2999 CG17646-RB 1596..2472 894..18 4310 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1749740..1750085 363..18 1730 100 Minus
2L 23513712 2L 1747692..1747860 790..622 845 100 Minus
2L 23513712 2L 1749515..1749676 523..362 795 99.4 Minus
2L 23513712 2L 1748774..1748874 621..521 490 99 Minus
2L 23513712 2L 1745926..1746029 894..791 475 97.1 Minus
Blast to na_te.dros performed on 2015-02-01 10:49:50 has no hits.

BS10652.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:04 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PB 1424..2301 16..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:06 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PA 1424..2301 16..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:31:52 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 1596..2472 18..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:40 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 1596..2472 18..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:40 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1745926..1746029 791..894 97 -> Minus
2L 1747692..1747860 622..790 100 -> Minus
2L 1748774..1748874 521..621 99 -> Minus
2L 1749518..1749676 362..520 99 -> Minus
2L 1749742..1750085 18..361 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:31:52 Download gff for BS10652.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1745926..1746029 791..894 97 -> Minus
arm_2L 1747692..1747860 622..790 100 -> Minus
arm_2L 1748774..1748874 521..621 99 -> Minus
arm_2L 1749518..1749676 362..520 99 -> Minus
arm_2L 1749742..1750085 18..361 100   Minus

BS10652.5prime Sequence

953 bp (812 high quality bases) assembled on 2006-04-19

> BS10652.5prime
GAAGTTATCAGTCGACATGACCCTCTTGCCAGACATCAAGGCATCGGATG
CCGCTTGCTGCGTGGGAGGTGCGAACAGCGATGCCAGCAGCAGTTCCGGC
GTCTGCAGCCTCAAGGGTCACCATGGTGACCCCGACAGCGGTTGCCTGGG
CATCAACTGTTGCACCACGGCGGCCAGCTCGGAGCTGTCCATCGACGAGA
CGTCATCGACCTCGTCCCGAGGCTCCTGCGAGCTGACCAGCAAGGTGACC
AACGACCTGAACGGATTCCAGAGTCCGAACTACCACCAGGCGGTGGCGCA
TGCCAACTTCGACCACTGCGATCCCGTGGACATCCAGTTCGCCGACGTGC
GCTACACAGTGAAAAAGTTCTCCTTCCCGGAGCGGAAGTTCGTCACCAAG
GAGATCCTTCATGGCCTGAACGGCAGCTTCCGGTCTGGCGAACTCACAGC
CATCATGGGTCCTTCGGGCGCCGGCAAGAGCACGCTGCTGAATGTGATGT
CCGGATTTTGCTCCACTGGCGTGTCGGGCGATATCCGGGTTAATAGAAAG
CCCATGGCTCCCAGCTCCGAGAGGTTTCGCCAAATGCTGTGCTACATCCA
CCAGGACGATCTGCTGCGTCCACAGCTGTTGGTCGGCGAGATAATGCTGC
TGGCGGCACATCTGAAGCTGGGCTTCAAGGTCACCAAGGCGTACAAAATG
GATCTGATCAAACACATCTTATCGCTGCTGGGTCTGGACCATCGCTACAA
TGTGCCCACTGGGAAGCTTTCGGGTGGCCAGAAGAAGCGACTCGCAATCG
CCCTGGAGCTGATAAGTAATCCTCCCGTGCTATATCTGGATGAGCCGACG
ACTGGCCTGGACAGCTCCTCGTGCAGCTCCTGCGTGGCTCTGCTGAAGAA
ACTGGCGTCGCAGGCCACACGATAGTCTGCACATCCATCAGCCGAGTGCC
CTG

BS10652.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PB 2301 CG17646-RB 1..898 17..914 4290 99.1 Plus
CG17646-PA 2301 CG17646-RA 1..898 17..914 4290 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-RA 3421 CG17646-RA 593..1532 15..952 4515 98.8 Plus
CG17646-RB 2999 CG17646-RB 171..1110 15..952 4515 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1741699..1742076 15..392 1815 98.7 Plus
2L 23513712 2L 1743344..1743540 510..706 955 99 Plus
2L 23513712 2L 1743633..1743779 706..852 720 99.3 Plus
2L 23513712 2L 1742142..1742260 392..510 595 100 Plus
2L 23513712 2L 1744923..1745024 853..952 395 97.1 Plus
Blast to na_te.dros performed on 2015-02-10 23:50:07 has no hits.

BS10652.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:05 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PB 1..938 17..953 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:08 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-PA 1..938 17..953 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:51 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 162..1110 8..953 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:52 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17646-RB 162..1110 8..953 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:52 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1744923..1745024 853..953 96   Plus
2L 1741690..1742076 8..392 97 -> Plus
2L 1742143..1742260 393..510 100 -> Plus
2L 1743345..1743540 511..706 98 -> Plus
2L 1743634..1743779 707..852 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:51 Download gff for BS10652.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1741690..1742076 8..392 97 -> Plus
arm_2L 1742143..1742260 393..510 100 -> Plus
arm_2L 1743345..1743540 511..706 98 -> Plus
arm_2L 1743634..1743779 707..852 99 -> Plus
arm_2L 1744923..1745024 853..953 96   Plus

BS10652.pep Sequence

Translation from 16 to 2316

> BS10652.pep
MTLLPDIKASDAACCVGGANSDASSSSGVCSLKGHHGDPDSGCLGINCCT
TAASSELSIDETSSTSSRGSCELTSKVTNDLNGFQSPNYHQAVAHANFDH
CDPVDIQFADVRYTVKKFSFPERKFVTKEILHGLNGSFRSGELTAIMGPS
GAGKSTLLNVMSGFCSTGVSGDIRVNRKPMAPSSERFRQMLCYIHQDDLL
RPQLLVGEIMLLAAHLKLGFKVTKAYKMDLIKHILSLLGLDHRYNVPTGK
LSGGQKKRLAIALELISNPPVLYLDEPTTGLDSSSCSSCVALLKKLASQG
HTIVCTIHQPSALIFEMFDKLYTVVDGHCMYQGPVRELVPFLADQQLVCP
SYHNPADYLLEVAVGEHQRDLNELIHAANKKYYEDVDRHRYMSSDDMARL
VESIKENMGGKAVVKTSEALAAFAAAQFSSFDYVKPSPQELALEEIKALS
GGPESADPDLLEKNLRPQPQPLAKAGELARPPNAIRSASFLMQYVLLMQR
ILICAKRNYFLLLARIFSHIFIGVVFGYLYMNVGNNAQSVLGNYVYLYGS
TLLLVYTGKMAVVLTFPLEIDMLTREHFNRWYKLGPYFLSLISFEIPFQS
LCTAMYIIISVHLTGNDATDSFRIYYFMLLGIMASLSAQAWGFFVGATLP
TKLAVFLGPILAVMFSVFGFCTRYIDITPLFRWMWHLSYFRAGFHGALNA
IYGMDRPFLECPETAMYCHFRSPKVFLKYMMISDVHMSDCLILMGIVIGV
MHVLTLITLWHKLNKR*

BS10652.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17646-PA 766 CG17646-PA 1..766 1..766 4005 100 Plus
CG17646-PB 766 CG17646-PB 1..766 1..766 4005 100 Plus
CG3164-PD 698 CG3164-PD 44..694 104..763 1089 37.9 Plus
CG3164-PB 698 CG3164-PB 44..694 104..763 1089 37.9 Plus
CG3164-PC 699 CG3164-PC 45..695 104..763 1089 37.9 Plus