Clone BS10658 Report

Search the DGRC for BS10658

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptPyK-RB
Protein status:BS10658.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10658.3prime Sequence

906 bp (835 high quality bases) assembled on 2006-04-19

> BS10658.3prime
ATGGTCTAGAAAGCTTTTATTCGACGGTGACAATGCGGATGGTGTTGGTG
AAGCCGGAGCCCTGCTTCCAGCCGGTAACCACCACGACGGAATCGCCGGT
CTTGATGAAGCCGTTCTTCTTTCCGACCTGCAGACCGAACTGCACGCGCA
CGTCCACGTCCTTCAGCCAGTCACCAAGACCGGGCTCCTTGTAGATGAGT
GGCACCAGTCCACGGTAGAGATGGGCCTGTCGGGCGGTCTGCGCGAAACG
GGTGACCGCGATGATGGGGCAGCGTGGGCGGTACTTGCTCACCTGGAAGG
CCGACTTGCCGCTGGTGGTGATCACCACGATGGCGGAGGCCTTGGCCTTG
GTGGCAGCCTCAACGGCAGCGATGGCAGCCGCGTGAGAGGCATCGATGGT
ACCAGCGCCGCGAACCAAGTCGTTAAAGAGGTTCTGGTGCCAGAGGGCAG
CCTCGGCCTCCTTGCAGGTCTTGGCCATGGTCAGGACGCACTCCAGCGGG
TACTCGCCCTTGGCGGTCTCACCAGACAACATGACGCAATCAGCACCATC
GAGCACAGCGTTGGCCACATCAGAGATCTCAGCGCGAGTGGGACGTGGCT
TCTTCACCATTGACTCCAACATCTGAGTGGCGCAGATCACAGGCTTGCCA
GCCTTGTTGCAGCGGGCAATCATGGCCTTCTGGGCGAGGAACACCTTCTC
GGCGGGAATCTCAATACCCAGATCTCCACGGGCCACCATAATGCCATCAC
CGGCCTCGATGATCTCGTCCAGGTTGTGCATGCCCTGCTGGTTCTCGATC
TTGGAAATGATCTTGATGTTCTTGCCCTTCTCGCCAAGAACCTTACGGAT
CTCGGTCAAAGCAGCGGCGTTGCGGATGAACGAAGCAAAGATCATGTCCA
CTTTCT

BS10658.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7070-PB 1539 PyK-RB 653..1539 903..17 4435 100 Minus
CG7070-PA 1602 PyK-RA 716..1602 903..17 4435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-RA 2109 CG7070-RA 958..1845 903..16 4440 100 Minus
PyK-RB 1958 CG7070-RB 807..1694 903..16 4440 100 Minus
CG7069-RA 2693 CG7069-RA 1011..1294 748..465 490 78.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22371451..22372167 903..187 3585 100 Minus
3R 32079331 3R 22372225..22372382 187..30 790 100 Minus
3R 32079331 3R 22373897..22374180 748..465 475 77.8 Minus
3R 32079331 3R 14753414..14753603 472..661 290 76.8 Plus
Blast to na_te.dros performed on 2015-02-10 22:36:23 has no hits.

BS10658.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:13 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
PyK-PA 713..1602 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:19 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7070-PA 713..1602 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:10 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 804..1698 8..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:31 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 804..1698 8..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:31 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22371448..22372167 187..906 99 -> Minus
3R 22372226..22372382 30..186 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:10 Download gff for BS10658.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18197170..18197889 187..906 99 -> Minus
arm_3R 18197948..18198104 30..186 100 -> Minus

BS10658.5prime Sequence

872 bp (859 high quality bases) assembled on 2006-04-19

> BS10658.5prime
GAAGTTATCAGTCGACATGGCCGCAGGAGCTGATACCCAACTGGAGCACA
TGTGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGTCCGGA
ATCGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTGGAGAA
GATGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCACGGAT
CGCACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGGTGAAG
AACTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCCCTGGA
CACCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGGCACCG
CCGAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCAACAAG
GAATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTACGAGAA
CATTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGACGGTC
TGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTGCGAG
GTGGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTGCCAGG
CGTGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGATCTGC
TGTTCGGTGTGGAGCAGGAAGTGGACATGATCTTTGCTTCGTTCATCCGC
AACGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGGGCAA
GAACATCAAGATCATTTCCAAGATCGAGAACCAGCAGGGCATGCACAACC
TGGACGAGATCATCGAGGCCGGTGATGGCATTATGGTGGCCCGTGGAGAT
CTGGGTATTGAGATTCCCGCCG

BS10658.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7070-PA 1602 PyK-RA 62..919 15..872 4290 100 Plus
CG7070-PB 1539 PyK-RB 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-RA 2109 CG7070-RA 304..1161 15..872 4290 100 Plus
PyK-RB 1958 CG7070-RB 153..1010 15..872 4290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22370797..22371654 15..872 4290 100 Plus
Blast to na_te.dros performed on 2015-02-10 05:00:29 has no hits.

BS10658.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:14 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
PyK-PA 58..919 9..872 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:20 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7070-PA 58..919 9..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:48:34 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 149..1010 9..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:26:13 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 149..1010 9..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:26:13 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22370793..22371654 9..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:48:34 Download gff for BS10658.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18196515..18197376 9..872 99   Plus

BS10658.complete Sequence

1571 bp assembled on 2006-11-01

GenBank Submission: FJ636707

> BS10658.complete
GAAGTTATCAGTCGACATGGCCGCAGGAGCTGATACCCAACTGGAGCACA
TGTGCCGTCTGCAGTTCGACTCGCCAGTGCCCCATGTGCGTCTGTCCGGA
ATCGTGTGCACCATCGGACCTGCCTCCAGCAGCGTGGAGATGCTGGAGAA
GATGATGGCCACCGGCATGAACATCGCGCGCATGAACTTCTCTCACGGAT
CGCACGAGTACCATGCCGCCACCGTGGCCAATGTGCGCCAGGCGGTGAAG
AACTACTCGGCCAAGCTGGGCTACGAACACCCCGTGGCCATTGCCCTGGA
CACCAAGGGGCCCGAGATCCGTACCGGTCTGATCGGAGGCAGCGGCACCG
CCGAGATTGAGCTGAAGAAGGGCGAGAAGATCAAGCTGACCACCAACAAG
GAATTCCTGGAGAAGGGCTCTCTGGAGATTGTGTACGTGGACTACGAGAA
CATTGTCAATGTGGTGAAGCCCGGCAACCGGGTGTTCGTCGATGACGGTC
TGATCTCACTGATTGTCCGCGAGGTAGGCAAGGATTCCCTCACCTGCGAG
GTGGAGAACGGCGGCTCTCTGGGTTCCCGCAAGGGTGTGAACCTGCCAGG
CGTGCCCGTCGATCTGCCTGCCGTCTCCGAGAAGGATAAGAGCGATCTGC
TGTTCGGTGTGGAGCAGGAAGTGGACATGATCTTTGCTTCGTTCATCCGC
AACGCCGCTGCTTTGACCGAGATCCGTAAGGTTCTTGGCGAGAAGGGCAA
GAACATCAAGATCATTTCCAAGATCGAGAACCAGCAGGGCATGCACAACC
TGGACGAGATCATCGAGGCCGGTGATGGCATTATGGTGGCCCGTGGAGAT
CTGGGTATTGAGATTCCCGCCGAGAAGGTGTTCCTCGCCCAGAAGGCCAT
GATTGCCCGCTGCAACAAGGCTGGCAAGCCTGTGATCTGCGCCACTCAGA
TGTTGGAGTCAATGGTGAAGAAGCCACGTCCCACTCGCGCTGAGATCTCT
GATGTGGCCAACGCTGTGCTCGATGGTGCTGATTGCGTCATGTTGTCTGG
TGAGACCGCCAAGGGCGAGTACCCGCTGGAGTGCGTCCTGACCATGGCCA
AGACCTGCAAGGAGGCCGAGGCTGCCCTCTGGCACCAGAACCTCTTTAAC
GACTTGGTTCGCGGCGCTGGTACCATCGATGCCTCTCACGCGGCTGCCAT
CGCTGCCGTTGAGGCTGCCACCAAGGCCAAGGCCTCCGCCATCGTGGTGA
TCACCACCAGCGGCAAGTCGGCCTTCCAGGTGAGCAAGTACCGCCCACGC
TGCCCCATCATCGCGGTCACCCGTTTCGCGCAGACCGCCCGACAGGCCCA
TCTCTACCGTGGACTGGTGCCACTCATCTACAAGGAGCCCGGTCTTGGTG
ACTGGCTGAAGGACGTGGACGTGCGCGTGCAGTTCGGTCTGCAGGTCGGA
AAGAAGAACGGCTTCATCAAGACCGGCGATTCCGTCGTGGTGGTTACCGG
CTGGAAGCAGGGCTCCGGCTTCACCAACACCATCCGCATTGTCACCGTCG
AATAAAAGCTTTCTAGACCAT

BS10658.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-RA 1602 CG7070-PA 62..1602 15..1555 7705 100 Plus
PyK-RB 1539 CG7070-PB 1..1539 17..1555 7695 100 Plus
CG7069-RA 2235 CG7069-PA 386..944 549..1107 530 73 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-RA 2109 CG7070-RA 304..1845 15..1556 7710 100 Plus
PyK-RB 1958 CG7070-RB 153..1694 15..1556 7710 100 Plus
CG7069-RA 2693 CG7069-RA 736..1294 549..1107 530 73 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22370797..22372167 15..1385 6855 100 Plus
3R 32079331 3R 22372225..22372382 1385..1542 790 100 Plus
3R 32079331 3R 22373622..22374180 549..1107 530 73 Plus
3R 32079331 3R 14753414..14753603 1100..911 290 76.8 Minus
Blast to na_te.dros performed on 2014-11-27 14:48:30 has no hits.

BS10658.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:18 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 58..1602 9..1555 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:57 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 374..1923 9..1564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:15 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 155..1691 17..1553 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:19 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RA 374..1923 9..1564 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:03 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
PyK-RB 155..1691 17..1553 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:03 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22372226..22372384 1386..1548 97   Plus
3R 22370799..22372167 17..1385 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:15 Download gff for BS10658.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18196521..18197889 17..1385 100 -> Plus
arm_3R 18197948..18198106 1386..1548 97   Plus

BS10658.pep Sequence

Translation from 16 to 1554

> BS10658.pep
MAAGADTQLEHMCRLQFDSPVPHVRLSGIVCTIGPASSSVEMLEKMMATG
MNIARMNFSHGSHEYHAATVANVRQAVKNYSAKLGYEHPVAIALDTKGPE
IRTGLIGGSGTAEIELKKGEKIKLTTNKEFLEKGSLEIVYVDYENIVNVV
KPGNRVFVDDGLISLIVREVGKDSLTCEVENGGSLGSRKGVNLPGVPVDL
PAVSEKDKSDLLFGVEQEVDMIFASFIRNAAALTEIRKVLGEKGKNIKII
SKIENQQGMHNLDEIIEAGDGIMVARGDLGIEIPAEKVFLAQKAMIARCN
KAGKPVICATQMLESMVKKPRPTRAEISDVANAVLDGADCVMLSGETAKG
EYPLECVLTMAKTCKEAEAALWHQNLFNDLVRGAGTIDASHAAAIAAVEA
ATKAKASAIVVITTSGKSAFQVSKYRPRCPIIAVTRFAQTARQAHLYRGL
VPLIYKEPGLGDWLKDVDVRVQFGLQVGKKNGFIKTGDSVVVVTGWKQGS
GFTNTIRIVTVE*

BS10658.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
PyK-PA 533 CG7070-PA 22..533 1..512 2595 100 Plus
PyK-PB 512 CG7070-PB 1..512 1..512 2595 100 Plus
CG2964-PA 554 CG2964-PA 14..513 7..509 1268 47.8 Plus
CG7069-PA 744 CG7069-PA 1..461 51..511 1257 56.4 Plus
CG7362-PB 793 CG7362-PB 109..413 191..493 704 49.8 Plus