Clone Sequence Records
BS10660.3prime Sequence
801 bp (800 high quality bases) assembled on 2006-04-19
> BS10660.3prime
ATGGTCTAGAAAGCTTCTAGTACTCCTCAGCACCCTCGCCCTCACCGTCA
CCGGAATCCATGCCGACCTCCTCGTAGTCCTTCTCGAGGGCAGCCAGATC
CTCACGGGCCTCGGAGAACTCGCCCTCCTCCATGCCCTCACCAACATACC
AGTGGACGAAGGCCCTCTTGGCGTACATCAGATCGAACTTGTGGTCCAGA
CGGGCCCAGGCCTCGGCAATAGCCGTGGTATTGGACAACATGCACACGGC
ACGCTGCACCTTGGCCAGATCCCCGCCTGGGACGACAGTGGGTGGCTGGT
AGTTGATGCCCACCTTGAAGCCGGTGGGGCACCAGTCCACGAACTGAATG
GTACGCTTTGTCTTGATGGTGGCGATGGCGGCGTTCACGTCCTTGGGCAC
CACATCGCCGCGATACAGCATGCAGCAGGCCATGTACTTGCCGTGACGGG
GATCCACCTTGACCATCTGGTTGGCTGGCTCGAAGCAGGCGTTGGTGATC
TCGGCCACCGACAGCTGCTCGTGGTAGGCCTTCTCGGCGGAGATGACGGG
AGCGTACGTCACCAGCGGGAAGTGGATGCGGGGGTAAGGAACCAGGTTGG
TCTGGAACTCGGTGAGGTCCACATTTAGGGCTCCATCGAATCGCAGAGAG
GCGGTGATCGAGGACACTATTTGGCCGATTAAACGATTCAGGTTAGTGTA
AGTGGGTCGTTCGATGTCCAGGTTTCGGCGACAGATGTCGTAGATGGCCT
CGTTGTCCACCATAAAGGCGCAGTCGGAGTGCTCGAGGGTGGTGTGCGTG
G
BS10660.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2512-PA | 1353 | alphaTub84D-RA | 569..1353 | 801..17 | 3925 | 100 | Minus |
| CG2512-PB | 1353 | alphaTub84D-RB | 569..1353 | 801..17 | 3925 | 100 | Minus |
| CG1913-PA | 1353 | alphaTub84B-RA | 1103..1352 | 267..18 | 925 | 94.8 | Minus |
| CG9476-PA | 1350 | alphaTub85E-RA | 1024..1310 | 346..60 | 885 | 92.3 | Minus |
| CG1913-PA | 1353 | alphaTub84B-RA | 703..912 | 667..458 | 575 | 90.9 | Minus |
| CG1913-PA | 1353 | alphaTub84B-RA | 916..1082 | 454..288 | 535 | 92.8 | Minus |
| CG9476-PA | 1350 | alphaTub85E-RA | 730..912 | 640..458 | 340 | 87.4 | Minus |
| CG9476-PA | 1350 | alphaTub85E-RA | 928..1016 | 442..354 | 270 | 92.1 | Minus |
| CG1913-PA | 1353 | alphaTub84B-RA | 574..683 | 796..687 | 225 | 88.1 | Minus |
| CG8308-PA | 1389 | alphaTub67C-RA | 1238..1287 | 165..116 | 150 | 92 | Minus |
| CG9476-PA | 1350 | alphaTub85E-RA | 586..638 | 784..732 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:50:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 1075..1860 | 801..16 | 3930 | 100 | Minus |
| alphaTub84B-RA | 1752 | CG1913-RA | 712..1495 | 801..18 | 2810 | 90.7 | Minus |
| alphaTub85E-RA | 1560 | CG9476-RA | 671..1419 | 801..53 | 2305 | 87.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531827..7532612 | 801..16 | 3930 | 100 | Minus |
| 3R | 32079331 | 3R | 7087799..7088582 | 801..18 | 2810 | 90.6 | Minus |
| 3R | 32079331 | 3R | 9731362..9732110 | 53..801 | 2305 | 87.2 | Plus |
| 3L | 28110227 | 3L | 9682501..9683239 | 801..63 | 725 | 73.2 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:50:13 has no hits.
BS10660.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:17 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2512-PA | 569..1353 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:24 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2512-PA | 569..1353 | 17..801 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:31:56 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 1075..1862 | 13..801 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:43 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 1075..1862 | 13..801 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:43 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531827..7532614 | 13..801 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:31:56 Download gff for
BS10660.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3357549..3358336 | 13..801 | 99 | | Minus |
BS10660.5prime Sequence
875 bp (783 high quality bases) assembled on 2006-04-19
> BS10660.5prime
GAAGTTATCAGTCGACATGCGCGAATGTATCTCTATCCACGTGGGCCAGG
CCGGAGTCCAGATTGGAAATGCCTGCTGGGAGCTCTATTGCCTGGAGCAC
GGCATCCAGCCCGATGGCCAGATGCCCTCCGACAAGACCGTAGGCGGAGG
TGATGACTCGTTTAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACG
TGCCTCGCGCCGTGTTCGTGGATCTGGAGCCCACTGTGGTCGACGAGGTC
CGTACTGGAACCTACCGTCAGCTGTTCCACCCCGAGCAACTGATCACCGG
TAAGGAGGATGCGGCCAACAACTACGCCCGTGGCCACTACACCATTGGCA
AGGAGATCGTCGACCTGGTGCTGGACAGGATCCGCAAGCTGGCCGATCAA
TGCACCGGTCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTAC
CGGCTCCGGCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACG
GCAAGAAGTCCAAGCTGGAGTTCGCCGTGTACCCAGCTCCGCAGGTGTCC
ACCGCCGTGGTGGAGCCCTACAACTCCATCCTAACCACGCACACCACCCT
CGAGCACTCCGACTGCGCCTTTATGGTGGACAACGAGGCCATCTACGACA
TCTGTCGCCGAAACCTGGACATCGAACGACCCACTTACACTAACCTGAAT
CGTTTAATCGGCCAAATAGTGTCCTCGATCACCGCCTCTCTGCGATTCGA
TGGAGCCCTAAATGTGGACCTCACCGAGTTCCAGACCAACCTGGTTCCTT
ACCCCCGCATCCACTTCCCGCTGGTGACGTACGCTCCCGTCATCTCCGCC
GAGAAGGCCTACCACGAGCAGCTGT
BS10660.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2512-PA | 1353 | alphaTub84D-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG2512-PB | 1353 | alphaTub84D-RB | 1..859 | 17..875 | 4295 | 100 | Plus |
| CG1913-PA | 1353 | alphaTub84B-RA | 1..683 | 17..699 | 2290 | 93.4 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 40..425 | 56..441 | 905 | 89.3 | Plus |
| CG1913-PA | 1353 | alphaTub84B-RA | 703..859 | 719..875 | 360 | 89.1 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 451..638 | 467..654 | 290 | 86.1 | Plus |
| CG9476-PA | 1350 | alphaTub85E-RA | 730..854 | 746..870 | 175 | 85.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1365 | 17..875 | 4295 | 100 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1002 | 17..875 | 3275 | 92.1 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 102..960 | 16..874 | 2360 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531259..7532117 | 17..875 | 4295 | 100 | Plus |
| 3R | 32079331 | 3R | 7087233..7088089 | 19..875 | 3265 | 92.1 | Plus |
| 3R | 32079331 | 3R | 9732286..9732779 | 537..44 | 1570 | 87.9 | Minus |
| 3R | 32079331 | 3R | 9731821..9732152 | 874..543 | 805 | 82.8 | Minus |
| 3L | 28110227 | 3L | 9682200..9682770 | 284..854 | 635 | 74.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:44:02 has no hits.
BS10660.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:18 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2512-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:25 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2512-PA | 1..859 | 17..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:41:29 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 495..1365 | 5..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:26 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 495..1365 | 5..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:26 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531247..7532117 | 5..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:41:29 Download gff for
BS10660.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3356969..3357839 | 5..875 | 99 | | Plus |
BS10660.complete Sequence
1385 bp assembled on 2006-11-01
GenBank Submission: FJ636708
> BS10660.complete
GAAGTTATCAGTCGACATGCGCGAATGTATCTCTATCCACGTGGGCCAGG
CCGGAGTCCAGATTGGAAATGCCTGCTGGGAGCTCTATTGCCTGGAGCAC
GGCATCCAGCCCGATGGCCAGATGCCCTCCGACAAGACCGTAGGCGGAGG
TGATGACTCGTTTAACACCTTCTTCAGCGAGACTGGAGCTGGCAAGCACG
TGCCTCGCGCCGTGTTCGTGGATCTGGAGCCCACTGTGGTCGACGAGGTC
CGTACTGGAACCTACCGTCAGCTGTTCCACCCCGAGCAACTGATCACCGG
TAAGGAGGATGCGGCCAACAACTACGCCCGTGGCCACTACACCATTGGCA
AGGAGATCGTCGACCTGGTGCTGGACAGGATCCGCAAGCTGGCCGATCAA
TGCACCGGTCTGCAGGGCTTCCTCATCTTCCACTCGTTCGGTGGAGGTAC
CGGCTCCGGCTTCACCTCGCTGCTGATGGAGCGTCTCTCCGTGGACTACG
GCAAGAAGTCCAAGCTGGAGTTCGCCGTGTACCCAGCTCCGCAGGTGTCC
ACCGCCGTGGTGGAGCCCTACAACTCCATCCTAACCACGCACACCACCCT
CGAGCACTCCGACTGCGCCTTTATGGTGGACAACGAGGCCATCTACGACA
TCTGTCGCCGAAACCTGGACATCGAACGACCCACTTACACTAACCTGAAT
CGTTTAATCGGCCAAATAGTGTCCTCGATCACCGCCTCTCTGCGATTCGA
TGGAGCCCTAAATGTGGACCTCACCGAGTTCCAGACCAACCTGGTTCCTT
ACCCCCGCATCCACTTCCCGCTGGTGACGTACGCTCCCGTCATCTCCGCC
GAGAAGGCCTACCACGAGCAGCTGTCGGTGGCCGAGATCACCAACGCCTG
CTTCGAGCCAGCCAACCAGATGGTCAAGGTGGATCCCCGTCACGGCAAGT
ACATGGCCTGCTGCATGCTGTATCGCGGCGATGTGGTGCCCAAGGACGTG
AACGCCGCCATCGCCACCATCAAGACAAAGCGTACCATTCAGTTCGTGGA
CTGGTGCCCCACCGGCTTCAAGGTGGGCATCAACTACCAGCCACCCACTG
TCGTCCCAGGCGGGGATCTGGCCAAGGTGCAGCGTGCCGTGTGCATGTTG
TCCAATACCACGGCTATTGCCGAGGCCTGGGCCCGTCTGGACCACAAGTT
CGATCTGATGTACGCCAAGAGGGCCTTCGTCCACTGGTATGTTGGTGAGG
GCATGGAGGAGGGCGAGTTCTCCGAGGCCCGTGAGGATCTGGCTGCCCTC
GAGAAGGACTACGAGGAGGTCGGCATGGATTCCGGTGACGGTGAGGGCGA
GGGTGCTGAGGAGTACTAGAAGCTTTCTAGACCAT
BS10660.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1353 | CG2512-PA | 1..1353 | 17..1369 | 6765 | 100 | Plus |
| alphaTub84B-RA | 1353 | CG1913-PA | 1..1352 | 17..1368 | 5185 | 92.2 | Plus |
| alphaTub85E-RA | 1350 | CG9476-PA | 28..1317 | 44..1333 | 3975 | 87.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:28:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-RA | 1980 | CG2512-RA | 507..1860 | 17..1370 | 6770 | 100 | Plus |
| alphaTub84B-RA | 1752 | CG1913-RA | 144..1495 | 17..1368 | 5185 | 92.2 | Plus |
| alphaTub85E-RA | 1560 | CG9476-RA | 102..1419 | 16..1333 | 3980 | 86.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:28:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7531259..7532612 | 17..1370 | 6770 | 100 | Plus |
| 3R | 32079331 | 3R | 7087233..7088582 | 19..1368 | 5175 | 92.2 | Plus |
| 3R | 32079331 | 3R | 9731362..9732152 | 1333..543 | 2425 | 87.1 | Minus |
| 3R | 32079331 | 3R | 9732286..9732779 | 537..44 | 1570 | 87.9 | Minus |
| 3L | 28110227 | 3L | 9682200..9683239 | 284..1323 | 1060 | 73.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:28:11 has no hits.
BS10660.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:10 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RB | 1..1353 | 17..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:44 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RB | 387..1754 | 5..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:53 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 507..1859 | 17..1369 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:10 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RB | 387..1754 | 5..1373 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:11:17 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaTub84D-RA | 507..1859 | 17..1369 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:17 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7531259..7532611 | 17..1369 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:53 Download gff for
BS10660.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3356981..3358333 | 17..1369 | 100 | | Plus |
BS10660.pep Sequence
Translation from 16 to 1368
> BS10660.pep
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAA
NNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPAN
QMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSGDGEGEGAEEY
*
BS10660.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaTub84D-PA | 450 | CG2512-PA | 1..450 | 1..450 | 2387 | 100 | Plus |
| alphaTub84B-PA | 450 | CG1913-PA | 1..450 | 1..450 | 2381 | 99.6 | Plus |
| alphaTub85E-PA | 449 | CG9476-PA | 1..449 | 1..450 | 2272 | 94.9 | Plus |
| alphaTub67C-PA | 462 | CG8308-PA | 1..456 | 1..445 | 1726 | 69.1 | Plus |
| CG7794-PA | 455 | CG7794-PA | 6..436 | 3..435 | 1270 | 53.6 | Plus |
