Clone BS10666 Report

Search the DGRC for BS10666

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptRASSF8-RA
Protein status:BS10666.pep: full length peptide match
Sequenced Size:1856

Clone Sequence Records

BS10666.3prime Sequence

918 bp (841 high quality bases) assembled on 2006-04-19

> BS10666.3prime
ATGGTCTAGAAAGCTTTTAAACCCACACACCATGAGGATTTTTACTGGTT
GGAACCGCCGTTTCAAGTTGCCTGGGCGAACCGATGATCCGCCGGCTGCT
GCCCTGCTTGTTGGGTCCTTCCAATAGATGCTTGATCTCCTCCGTGGTGG
TCACAGTCAGGCTCTGCAAATTCACCTCCTTCATCTCGTTGACCAGCTGC
TCCACCTGCCGCTTCTTGTCCGCGATGGCATGCTCGATCATGAGTAGTTC
CTTCTTTAAACTATCTGCAGTTTTGTTTGAAGTGTCAGTGTTGTGCAGAG
CCTGGTCGATTTCACTCTGAATGCGCTCCATTTCCATCAAGAAGTCTCGC
TCCACAGTTTGCCTATTGGTCTGCTGTTGATGTTGCTGCTCCAGCTCAAT
GTCATCCATCAGCAAGCGCATTTTGTTCTTGCATTGTAGCAGCTCTGTTT
CGCAATTGGCCAGCTTGGATCGCAGTAGAGCTATTTCTGATTTCAAAGTC
TTCTCTTGCTGCTTGACCAATTCGTTTTCCTCTTCCACATACTGCAGAGT
CTGGAGCTGTTCGCTTCCTTGCCGAAAGATTTGATCCGCCTTGGAAATCT
CACGCGAAATAGCATCCAACTCGTGGGCGTGGTCGCGTTCTTTGCTCTCC
AAATAAACTATTTCCGTATCGAACTTTTGCAATTCCATTTGCTGGGCTGT
GATCTTCTCCCGCTGAAACTTGATGAGCTGCAGCAAATCGTTATACTGCG
TGGTCTGGAACATGGGCTCACCCTCCTCCATGGCCTGGCTATTATTGTTG
ATGCTATTAGTGTTGTGGCTGCTATGCTGATCGTAGTCGCTGAGAAACGG
ATTCGTCGAGGAGGAGGCATTGGACATGGTGTCCGCATTGCTGCTGGCCA
AACGCTGCCCCTGGCCCA

BS10666.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5053-PA 1824 CG5053-RA 926..1824 915..17 4495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 1546..2444 915..17 4495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25664308..25664655 364..17 1740 100 Minus
3R 32079331 3R 25663936..25664249 675..362 1570 100 Minus
3R 32079331 3R 25663629..25663870 915..674 1210 100 Minus
Blast to na_te.dros performed 2015-02-10 22:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2998..3089 493..405 120 62.4 Minus

BS10666.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:26 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 924..1824 17..917 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:36 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 924..1824 17..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:13 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1544..2444 17..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:38 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 1544..2444 17..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:38 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25663627..25663870 674..917 99 -> Minus
3R 25663938..25664248 363..673 100 -> Minus
3R 25664310..25664655 17..362 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:13 Download gff for BS10666.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21489349..21489592 674..917 99 -> Minus
arm_3R 21489660..21489970 363..673 100 -> Minus
arm_3R 21490032..21490377 17..362 100   Minus

BS10666.5prime Sequence

923 bp (825 high quality bases) assembled on 2006-04-19

> BS10666.5prime
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAAATAACACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCC

BS10666.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5053-PA 1824 CG5053-RA 1..818 17..834 4090 100 Plus
CG5053-PA 1824 CG5053-RA 824..907 840..923 420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 621..1527 17..923 4490 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25663144..25663610 457..923 2260 98.9 Plus
3R 32079331 3R 25662631..25663008 86..463 1890 100 Plus
3R 32079331 3R 25662415..25662487 17..89 365 100 Plus
Blast to na_te.dros performed 2015-02-12 01:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..65 796..844 117 75 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7103 796..844 117 75 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..65 804..837 116 82.4 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7103 804..837 116 82.4 Plus
Dbif\P-element_O 2986 Dbif\P-element_O P_O 2986bp Derived from X71634. 1445..1498 791..844 108 66.7 Plus

BS10666.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:27 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:37 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5053-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:19 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 611..1527 7..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:57 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 611..1527 7..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:57 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25662405..25662486 7..88 95 -> Plus
3R 25662634..25663007 89..462 100 -> Plus
3R 25663150..25663610 463..923 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:19 Download gff for BS10666.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21488127..21488208 7..88 95 -> Plus
arm_3R 21488356..21488729 89..462 100 -> Plus
arm_3R 21488872..21489332 463..923 99   Plus

BS10666.complete Sequence

1856 bp assembled on 2008-08-14

GenBank Submission: FJ636710

> BS10666.complete
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCCCGAGAAACAGCCCCATGTGCCAGGGGC
AGCGTTTGGCCAGCAGCAATGCGGACACCATGTCCAATGCCTCCTCCTCG
ACGAATCCGTTTCTCAGCGACTACGATCAGCATAGCAGCCACAACACTAA
TAGCATCAACAATAATAGCCAGGCCATGGAGGAGGGTGAGCCCATGTTCC
AGACCACGCAGTATAACGATTTGCTGCAGCTCATCAAGTTTCAGCGGGAG
AAGATCACAGCCCAGCAAATGGAATTGCAAAAGTTCGATACGGAAATAGT
TTATTTGGAGAGCAAAGAACGCGACCACGCCCACGAGTTGGATGCTATTT
CGCGTGAGATTTCCAAGGCGGATCAAATCTTTCGGCAAGGAAGCGAACAG
CTCCAGACTCTGCAGTATGTGGAAGAGGAAAACGAATTGGTCAAGCAGCA
AGAGAAGACTTTGAAATCAGAAATAGCTCTACTGCGATCCAAGCTGGCCA
ATTGCGAAACAGAGCTGCTACAATGCAAGAACAAAATGCGCTTGCTGATG
GATGACATTGAGCTGGAGCAGCAACATCAACAGCAGACCAATAGGCAAAC
TGTGGAGCGAGACTTCTTGATGGAAATGGAGCGCATTCAGAGTGAAATCG
ACCAGGCTCTGCACAACACTGACACTTCAAACAAAACTGCAGATAGTTTA
AAGAAGGAACTACTCATGATCGAGCATGCCATCGCGGACAAGAAGCGGCA
GGTGGAGCAGCTGGTCAACGAGATGAAGGAGGTGAATTTGCAGAGCCTGA
CTGTGACCACCACGGAGGAGATCAAGCATCTATTGGAAGGACCCAACAAG
CAGGGCAGCAGCCGGCGGATCATCGGTTCGCCCAGGCAACTTGAAACGGC
GGTTCCAACCAGTAAAAATCCTCATGGTGTGTGGGTTTAAAAGCTTTCTA
GACCAT

BS10666.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 1824 CG5053-PA 1..1824 17..1840 9120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-RA 3429 CG5053-RA 621..2444 17..1840 9120 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25663144..25663870 457..1183 3620 99.9 Plus
3R 32079331 3R 25662631..25663008 86..463 1890 100 Plus
3R 32079331 3R 25664308..25664655 1493..1840 1740 100 Plus
3R 32079331 3R 25663936..25664249 1182..1495 1570 100 Plus
3R 32079331 3R 25662415..25662487 17..89 365 100 Plus
Blast to na_te.dros performed 2014-11-26 22:33:21
Subject Length Description Subject Range Query Range Score Percent Strand
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 14..59 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7052..7097 796..840 128 78.3 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 32..68 804..840 122 81.1 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7070..7106 804..840 122 81.1 Plus
springer 7546 springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. 2998..3089 1364..1452 120 62.4 Plus

BS10666.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:17 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 606..2439 7..1840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:54 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 621..2442 17..1838 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:06 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
CG5053-RA 616..2437 17..1838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:15 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
RASSF8-RA 621..2442 17..1838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:15 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25662415..25662486 17..88 100 -> Plus
3R 25662634..25663007 89..462 100 -> Plus
3R 25663150..25663870 463..1183 100 -> Plus
3R 25663938..25664248 1184..1494 100 -> Plus
3R 25664310..25664653 1495..1838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:54 Download gff for BS10666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21490032..21490375 1495..1838 100   Plus
arm_3R 21488137..21488208 17..88 100 -> Plus
arm_3R 21488356..21488729 89..462 100 -> Plus
arm_3R 21488872..21489592 463..1183 100 -> Plus
arm_3R 21489660..21489970 1184..1494 100 -> Plus

BS10666.pep Sequence

Translation from 16 to 1839

> BS10666.pep
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWV*

BS10666.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
RASSF8-PA 607 CG5053-PA 1..607 1..607 3156 100 Plus