Clone Sequence Records
BS10666.3prime Sequence
918 bp (841 high quality bases) assembled on 2006-04-19
> BS10666.3prime
ATGGTCTAGAAAGCTTTTAAACCCACACACCATGAGGATTTTTACTGGTT
GGAACCGCCGTTTCAAGTTGCCTGGGCGAACCGATGATCCGCCGGCTGCT
GCCCTGCTTGTTGGGTCCTTCCAATAGATGCTTGATCTCCTCCGTGGTGG
TCACAGTCAGGCTCTGCAAATTCACCTCCTTCATCTCGTTGACCAGCTGC
TCCACCTGCCGCTTCTTGTCCGCGATGGCATGCTCGATCATGAGTAGTTC
CTTCTTTAAACTATCTGCAGTTTTGTTTGAAGTGTCAGTGTTGTGCAGAG
CCTGGTCGATTTCACTCTGAATGCGCTCCATTTCCATCAAGAAGTCTCGC
TCCACAGTTTGCCTATTGGTCTGCTGTTGATGTTGCTGCTCCAGCTCAAT
GTCATCCATCAGCAAGCGCATTTTGTTCTTGCATTGTAGCAGCTCTGTTT
CGCAATTGGCCAGCTTGGATCGCAGTAGAGCTATTTCTGATTTCAAAGTC
TTCTCTTGCTGCTTGACCAATTCGTTTTCCTCTTCCACATACTGCAGAGT
CTGGAGCTGTTCGCTTCCTTGCCGAAAGATTTGATCCGCCTTGGAAATCT
CACGCGAAATAGCATCCAACTCGTGGGCGTGGTCGCGTTCTTTGCTCTCC
AAATAAACTATTTCCGTATCGAACTTTTGCAATTCCATTTGCTGGGCTGT
GATCTTCTCCCGCTGAAACTTGATGAGCTGCAGCAAATCGTTATACTGCG
TGGTCTGGAACATGGGCTCACCCTCCTCCATGGCCTGGCTATTATTGTTG
ATGCTATTAGTGTTGTGGCTGCTATGCTGATCGTAGTCGCTGAGAAACGG
ATTCGTCGAGGAGGAGGCATTGGACATGGTGTCCGCATTGCTGCTGGCCA
AACGCTGCCCCTGGCCCA
BS10666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5053-PA | 1824 | CG5053-RA | 926..1824 | 915..17 | 4495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 1546..2444 | 915..17 | 4495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25664308..25664655 | 364..17 | 1740 | 100 | Minus |
3R | 32079331 | 3R | 25663936..25664249 | 675..362 | 1570 | 100 | Minus |
3R | 32079331 | 3R | 25663629..25663870 | 915..674 | 1210 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2998..3089 | 493..405 | 120 | 62.4 | Minus |
BS10666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:26 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 924..1824 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:36 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 924..1824 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:13 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 1544..2444 | 17..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:38 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 1544..2444 | 17..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:38 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25663627..25663870 | 674..917 | 99 | -> | Minus |
3R | 25663938..25664248 | 363..673 | 100 | -> | Minus |
3R | 25664310..25664655 | 17..362 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:13 Download gff for
BS10666.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21489349..21489592 | 674..917 | 99 | -> | Minus |
arm_3R | 21489660..21489970 | 363..673 | 100 | -> | Minus |
arm_3R | 21490032..21490377 | 17..362 | 100 | | Minus |
BS10666.5prime Sequence
923 bp (825 high quality bases) assembled on 2006-04-19
> BS10666.5prime
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAAATAACACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCC
BS10666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5053-PA | 1824 | CG5053-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG5053-PA | 1824 | CG5053-RA | 824..907 | 840..923 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 621..1527 | 17..923 | 4490 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25663144..25663610 | 457..923 | 2260 | 98.9 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 86..463 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25662415..25662487 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..65 | 796..844 | 117 | 75 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7103 | 796..844 | 117 | 75 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..65 | 804..837 | 116 | 82.4 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7103 | 804..837 | 116 | 82.4 | Plus |
Dbif\P-element_O | 2986 | Dbif\P-element_O P_O 2986bp Derived from X71634. | 1445..1498 | 791..844 | 108 | 66.7 | Plus |
BS10666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:27 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:37 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:21:19 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 611..1527 | 7..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:33:57 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 611..1527 | 7..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:33:57 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25662405..25662486 | 7..88 | 95 | -> | Plus |
3R | 25662634..25663007 | 89..462 | 100 | -> | Plus |
3R | 25663150..25663610 | 463..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:21:19 Download gff for
BS10666.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21488127..21488208 | 7..88 | 95 | -> | Plus |
arm_3R | 21488356..21488729 | 89..462 | 100 | -> | Plus |
arm_3R | 21488872..21489332 | 463..923 | 99 | | Plus |
BS10666.complete Sequence
1856 bp assembled on 2008-08-14
GenBank Submission: FJ636710
> BS10666.complete
GAAGTTATCAGTCGACATGGAGCTGAAAGTTTGGGTCGAGGGCATCCAGC
GGATAGTTTGCGGCGTTACAGTGAACACCACATGTCAGGATGTGGTTTTT
GCTTTGGCCCATGCCACTGGAAAAGTGGGCAGATTCACTTTAATCGAAAG
GTGGCGCAATAACGAACGCCACCTGGCCCCCAATGAGAATCCAATGAAGC
TGCTGCTCAAATGGGGCGAGTATGCAAATGATGTGCAGTTTATATTACAA
CGTTCGGAAAACAAAACACAGCAGCAGCAGCAGCAACAACAACAGCAGCA
GCAGAACAATAATAATAATAACAACTATGCTGTGATGACAACAACAAAAA
AGCCGCTGGGGCCGAACAACAATAACAATAATAAGCCAGCGCCCACTTTG
CTAAAGCAAAAGTCGAACGTCGAACTCAGCTACCGCACAAAGGAATTGAA
AAAAAGTTTCGGGGGCCACGATGCCAAGCAGTTTGACAACATTGGAATCG
TCAAGGGAATTCCGCAGCAGCAGCAATTGCAGTCACAACAAACGGCCATG
GGAGCACCGGCGAGTCCACCACAGGAGCAGCTGACACCGCAGGATAACAA
TAATGTAGCACCACTGGTGCCAAAGCATGAGAAATCGCTGTCCAATCCGC
TGGACATGACCAGCACGGGTAGCAATCCACCCGCACCTACAAATGGCTAC
AATGACTTCTACAACAATAACAGCAGCAGTAATCAGCATATATACAGCCA
GCTGAGCAAATCCAGCAATGAACTCCGACGCTCCAGTCCCAACGAAATGT
ACTACAACAATAATAACAATATTGTTAATAACAATAACAACTCACCGGAG
CTGTACAAGCAAACGCCGACGATTTCCGCGAATGGAGCTCTAGTCCCACC
ACCATATCGTGACCCGCCACCCCCGAGAAACAGCCCCATGTGCCAGGGGC
AGCGTTTGGCCAGCAGCAATGCGGACACCATGTCCAATGCCTCCTCCTCG
ACGAATCCGTTTCTCAGCGACTACGATCAGCATAGCAGCCACAACACTAA
TAGCATCAACAATAATAGCCAGGCCATGGAGGAGGGTGAGCCCATGTTCC
AGACCACGCAGTATAACGATTTGCTGCAGCTCATCAAGTTTCAGCGGGAG
AAGATCACAGCCCAGCAAATGGAATTGCAAAAGTTCGATACGGAAATAGT
TTATTTGGAGAGCAAAGAACGCGACCACGCCCACGAGTTGGATGCTATTT
CGCGTGAGATTTCCAAGGCGGATCAAATCTTTCGGCAAGGAAGCGAACAG
CTCCAGACTCTGCAGTATGTGGAAGAGGAAAACGAATTGGTCAAGCAGCA
AGAGAAGACTTTGAAATCAGAAATAGCTCTACTGCGATCCAAGCTGGCCA
ATTGCGAAACAGAGCTGCTACAATGCAAGAACAAAATGCGCTTGCTGATG
GATGACATTGAGCTGGAGCAGCAACATCAACAGCAGACCAATAGGCAAAC
TGTGGAGCGAGACTTCTTGATGGAAATGGAGCGCATTCAGAGTGAAATCG
ACCAGGCTCTGCACAACACTGACACTTCAAACAAAACTGCAGATAGTTTA
AAGAAGGAACTACTCATGATCGAGCATGCCATCGCGGACAAGAAGCGGCA
GGTGGAGCAGCTGGTCAACGAGATGAAGGAGGTGAATTTGCAGAGCCTGA
CTGTGACCACCACGGAGGAGATCAAGCATCTATTGGAAGGACCCAACAAG
CAGGGCAGCAGCCGGCGGATCATCGGTTCGCCCAGGCAACTTGAAACGGC
GGTTCCAACCAGTAAAAATCCTCATGGTGTGTGGGTTTAAAAGCTTTCTA
GACCAT
BS10666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 1824 | CG5053-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-RA | 3429 | CG5053-RA | 621..2444 | 17..1840 | 9120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25663144..25663870 | 457..1183 | 3620 | 99.9 | Plus |
3R | 32079331 | 3R | 25662631..25663008 | 86..463 | 1890 | 100 | Plus |
3R | 32079331 | 3R | 25664308..25664655 | 1493..1840 | 1740 | 100 | Plus |
3R | 32079331 | 3R | 25663936..25664249 | 1182..1495 | 1570 | 100 | Plus |
3R | 32079331 | 3R | 25662415..25662487 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 22:33:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 14..59 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7052..7097 | 796..840 | 128 | 78.3 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 32..68 | 804..840 | 122 | 81.1 | Plus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7070..7106 | 804..840 | 122 | 81.1 | Plus |
springer | 7546 | springer SPRINGER 7546bp Derived from BACR06P08 by Sue Celniker, 29 March 2001. | 2998..3089 | 1364..1452 | 120 | 62.4 | Plus |
BS10666.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:17 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 606..2439 | 7..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:01:54 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 621..2442 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:06:06 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5053-RA | 616..2437 | 17..1838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:04:15 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RASSF8-RA | 621..2442 | 17..1838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:04:15 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25662415..25662486 | 17..88 | 100 | -> | Plus |
3R | 25662634..25663007 | 89..462 | 100 | -> | Plus |
3R | 25663150..25663870 | 463..1183 | 100 | -> | Plus |
3R | 25663938..25664248 | 1184..1494 | 100 | -> | Plus |
3R | 25664310..25664653 | 1495..1838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:01:54 Download gff for
BS10666.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21490032..21490375 | 1495..1838 | 100 | | Plus |
arm_3R | 21488137..21488208 | 17..88 | 100 | -> | Plus |
arm_3R | 21488356..21488729 | 89..462 | 100 | -> | Plus |
arm_3R | 21488872..21489592 | 463..1183 | 100 | -> | Plus |
arm_3R | 21489660..21489970 | 1184..1494 | 100 | -> | Plus |
BS10666.pep Sequence
Translation from 16 to 1839
> BS10666.pep
MELKVWVEGIQRIVCGVTVNTTCQDVVFALAHATGKVGRFTLIERWRNNE
RHLAPNENPMKLLLKWGEYANDVQFILQRSENKTQQQQQQQQQQQQNNNN
NNNYAVMTTTKKPLGPNNNNNNKPAPTLLKQKSNVELSYRTKELKKSFGG
HDAKQFDNIGIVKGIPQQQQLQSQQTAMGAPASPPQEQLTPQDNNNVAPL
VPKHEKSLSNPLDMTSTGSNPPAPTNGYNDFYNNNSSSNQHIYSQLSKSS
NELRRSSPNEMYYNNNNNIVNNNNNSPELYKQTPTISANGALVPPPYRDP
PPPRNSPMCQGQRLASSNADTMSNASSSTNPFLSDYDQHSSHNTNSINNN
SQAMEEGEPMFQTTQYNDLLQLIKFQREKITAQQMELQKFDTEIVYLESK
ERDHAHELDAISREISKADQIFRQGSEQLQTLQYVEEENELVKQQEKTLK
SEIALLRSKLANCETELLQCKNKMRLLMDDIELEQQHQQQTNRQTVERDF
LMEMERIQSEIDQALHNTDTSNKTADSLKKELLMIEHAIADKKRQVEQLV
NEMKEVNLQSLTVTTTEEIKHLLEGPNKQGSSRRIIGSPRQLETAVPTSK
NPHGVWV*
BS10666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RASSF8-PA | 607 | CG5053-PA | 1..607 | 1..607 | 3156 | 100 | Plus |