Clone Sequence Records
BS10667.3prime Sequence
850 bp (816 high quality bases) assembled on 2006-04-19
> BS10667.3prime
ATGGTCTAGAAAGCTTTTACACGCCAACGCTGTTGAGGCTGCCGGAGGAG
AGGTTCTCGGAGCGACTGGACAGACGGGGGCGTTTCATGAGTACACGACC
CGGCTTGCCGGGATTTTCGATGGAACCCGCCTCTGCGGATTGATTTAGAT
TGTTGTTGTTGCCGTTGTTGGAGCCATTGCTGCCGCCAGCACGTTCCAGC
GTGCGTTGTGAGCGACGCAGCGAGGAGGAGGACATCCTGCGCAGCGTGGG
ATCGTAGTCATAGCTCGACGGCCGCTGATAATAGGGCGCATCCTGGTCTG
TGTCATTCTTCTCCTCCAGCGCCTGCTGCTGCTGCTGGGCGAGTGGATTC
AAGGTTATGTGGATGTGTCGTGTTCGCTGGCGCTGCTTGGTGGGCGAGCA
GTTGCCCAGCGGCACAAAGTCATCTCTCAGCTCCGCCATCCGTGGCTTGT
TTGGATTGTTTCCCCGGCTTCTGGAATTCCTACGCCGGCAAACACAGAAA
CAGGTGCTAATCAGAAGCAGAATGAGCACTGCCCCGCCGCCGATTGTTCC
CGTCAGCATGGGACTCATATTGAATGTCTCGTTATGACTGGGAGTTGTTG
TATCGCGGTCGCCCATTTGCAGTGTTGGCTCCTCTGTGGTGCTGGTTTTG
GGACGTTGGGTGCGCCCCTGCTTAAGGGCACTAAATTCGGATGCAGAGGC
GGCACTGAAGGACTGCAACTTGAACTCGTACATGGTGGCCGTCTCGAGGG
GTGCTATTTTAAAGCTTCTAGCATGGGCTCCTTCAATGGTTGCCTTGAAA
TATTCCCCTGCCGAGGACGAGGGTCGATAGTAGGCGTAGTAGCCAGTGAT
BS10667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9211-PA | 2661 | iHog-RA | 1828..2661 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 2154..2987 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6945753..6946586 | 17..850 | 4170 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 21:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 3944..3998 | 93..39 | 113 | 67.3 | Minus |
BS10667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:28 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-PA | 1828..2661 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:39 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9211-PA | 1828..2661 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:42:27 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 2154..2996 | 8..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:18 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 2154..2996 | 8..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:18 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6945744..6946586 | 8..850 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:42:27 Download gff for
BS10667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6945744..6946586 | 8..850 | 99 | | Plus |
BS10667.5prime Sequence
877 bp (816 high quality bases) assembled on 2006-04-19
> BS10667.5prime
GAAGTTATCAGTCGACATGACGCTGCTCACATCCTCGCTGCTGCTCTTTT
CGCTGCTGACGTCGCGGCTCGAAGCAATTCCGGTTTTGGAGAAGTCCCCC
GCCCATCCTGCCCACTCTGCACATCCCGCACATCCCGCACATCCCGCACA
TCCCGCGCATCCATCGCCTGGCGTGCGAATTCTTCGCGCACCCGAATCTT
TGGTGGCGCCCCTGGGAGACGAGGTGGTGCTGGAGTGCGAGACCAGTTTG
CAGCCAGAGCGCTTCGAATGGAGCCACCGGTCCAGCAGATCTCCGGGAGC
GGGGTTCAAGTACCTTAAGACAGGCACGGCCAAAGCGAATGTCTCCCAGG
AGGCGGCCATCTCGCGACTGAGGGTGCTCGTCCGACCAGACACTCTAGGC
GAGTACCGATGCGTTGGCTGGTTCGGTCCGCTGGTGGTCACGTCTACCAT
TGCTCGATTGGAGCTGGCCAGCACTAGCCTGGTGGACGCTCAGGAATCGG
AATCACCCCTCCAATGGCGGGTGTCTGCTGGAAACTCTGTGCTCTGGTCC
TGCGGACAACAGGTGCAATCGAATCCATCTGCCAGTTGGTCCTACTATCG
AAACGGAGTGGAAATCAAACCGGAGTTCATCGGAACCAATGGAAATCTTT
TTCTAAGCAATGTATCCTCCGAGTCGTCAGGCAGCTATTCCTGCCAGGCA
ACCAATCCTGCCTCTGGCGAGAGAATTCAGCTGCCCGGCTCGCTGCAACT
ACAGGTTACACCAGAGCAGAGGTCGGAGAGTAAATCTCCACACTTGCTCA
GGGGACAGCCGAGCTCCCAAGAAATTACCATACGCGAAGGGAGTTCGCTG
TTGCTGCTGTGTCCTGGAGTTGGCTCA
BS10667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9211-PA | 2661 | iHog-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 327..1187 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6947553..6948413 | 877..17 | 4305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:58:59 has no hits.
BS10667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:29 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:41 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9211-PA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:04:45 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 323..1186 | 12..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:31 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 323..1186 | 12..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:31 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6947554..6948411 | 19..876 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:04:45 Download gff for
BS10667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6947554..6948411 | 19..876 | 100 | <- | Minus |
BS10667.complete Sequence
2693 bp assembled on 2007-11-30
GenBank Submission: FJ636711
> BS10667.complete
GAAGTTATCAGTCGACATGACGCTGCTCACATCCTCGCTGCTGCTCTTTT
CGCTGCTGACGTCGCGGCTCGAAGCAATTCCGGTTTTGGAGAAGTCCCCC
GCCCATCCTGCCCACTCTGCACATCCCGCACATCCCGCACATCCCGCACA
TCCCGCGCATCCATCGCCTGGCGTGCGAATTCTTCGCGCACCCGAATCTT
TGGTGGCGCCCCTGGGAGACGAGGTGGTGCTGGAGTGCGAGACCAGTTTG
CAGCCAGAGCGCTTCGAATGGAGCCACCGGTCCAGCAGATCTCCGGGAGC
GGGGTTCAAGTACCTTAAGACAGGCACGGCCAAAGCGAATGTCTCCCAGG
AGGCGGCCATCTCGCGACTGAGGGTGCTCGTCCGACCAGACACTCTAGGC
GAGTACCGATGCGTTGGCTGGTTCGGTCCGCTGGTGGTCACGTCTACCAT
TGCTCGATTGGAGCTGGCCAGCACTAGCCTGGTGGACGCTCAGGAATCGG
AATCACCCCTCCAATGGCGGGTGTCTGCTGGAAACTCTGTGCTCTGGTCC
TGCGGACAACAGGTGCAATCGAATCCATCTGCCAGTTGGTCCTACTATCG
AAACGGAGTGGAAATCAAACCGGAGTTCATCGGAACCAATGGAAATCTTT
TTCTAAGCAATGTATCCTCCGAGTCGTCAGGCAGCTATTCCTGCCAGGCA
ACCAATCCTGCCTCTGGCGAGAGAATTCAGCTGCCCGGCTCGCTGCAACT
ACAGGTTACACCAGAGCAGAGGTCGGAGAGTAAATCTCCACACTTGCTCA
GGGGACAGCCGAGCTCCCAAGAAATTACCATACGCGAAGGGAGTTCGCTG
TTGCTGCTGTGTCCTGGAGTTGGCTCACCGCCACCGACGGTTGTCTGGAG
CAGTCCCGATGTCGTGGGAGCTGTTAAGAACAAGCGTTCGAAAGTATTTG
GACACGCTTTGGAGATATCCAACACCCGAGTTAATGATGCTGGCACCTAT
ATTTGCTTTCAAGATAATGGAGTGCGGCCTGCGTTAGAACACTACATAAA
AGTGCATGTCGAGCAGCCGCCTCAGATTGTGCGACCACCCTGGGCCGATC
TTACCAACGAGGGCGATCGTTTGAAGTTGGAGTGTAAGGCCACAGGAGTG
CCAACGCCAGAGATCTACTGGCTGCTGAACGGTCACAGCAGCATCGATGA
TTCTGAGGCTGAGCTCTCCAATAATTTCCTGATATTGCACAGCGTCTTGA
AGCGTCATGCGGGCTATGTCCAATGCTTTGCACGAAACAGACTTGGTGAG
CACAGTGCGGGTACACTGCTGCAGGTGAATCCCAAGCAGATTCAGGAACC
CCGGGAATCGGGGGGTACACACAGGCCCAAGCCCAATCAGGGTTCCAGGC
AGAAGCAGATGTATCCACCGACTCCTCCAAATGTAACCCGACTTAGCGAT
GAATCCGTAATGTTGCGCTGGATGGTGCCCCGAAACGATGGGTTACCAAT
TGTCATTTTTAAGGTTCAGTACCGCATGGTTGGCAAGCGCAAGAACTGGC
AGACAACCAACGATAATATACCGTATGGAAAACCGAAGTGGAACTCCGAG
CTGGGCAAGAGCTTCACGGCTTCGGTGACGGACCTGAAGCCTCAGCACAC
CTATCGTTTCCGCATCCTAGCCGTTTACTCCAACAATGACAATAAGGAAA
GTAATACCTCGGCGAAATTTTACCTGCAGCCAGGTGCAGCACTTGATCCG
ATGCCGGTGCCAGAGCTTCTGGAGATCGAGGAATACTCTGAAACCGCTGT
GGTGCTGCACTGGAGTCTAGCCAGCGATGCGGATGAACACCTGATCACTG
GCTACTACGCCTACTATCGACCCTCGTCCTCGGCAGGGGAATATTTCAAG
GCAACCATTGAAGGAGCCCATGCTAGAAGCTTTAAAATAGCACCCCTCGA
GACGGCCACCATGTACGAGTTCAAGTTGCAGTCCTTCAGTGCCGCCTCTG
CATCCGAATTTAGTGCCCTTAAGCAGGGGCGCACCCAACGTCCCAAAACC
AGCACCACAGAGGAGCCAACACTGCAAATGGGCGACCGCGATACAACAAC
TCCCAGTCATAACGAGACATTCAATATGAGTCCCATGCTGACGGGAACAA
TCGGCGGCGGGGCAGTGCTCATTCTGCTTCTGATTAGCACCTGTTTCTGT
GTTTGCCGGCGTAGGAATTCCAGAAGCCGGGGAAACAATCCAAACAAGCC
ACGGATGGCGGAGCTGAGAGATGACTTTGTGCCGCTGGGCAACTGCTCGC
CCACCAAGCAGCGCCAGCGAACACGACACATCCACATAACCTTGAATCCA
CTCGCCCAGCAGCAGCAGCAGGCGCTGGAGGAGAAGAATGACACAGACCA
GGATGCGCCCTATTATCAGCGGCCGTCGAGCTATGACTACGATCCCACGC
TGCGCAGGATGTCCTCCTCCTCGCTGCGTCGCTCACAACGCACGCTGGAA
CGTGCTGGCGGCAGCAATGGCTCCAACAACGGCAACAACAACAATCTAAA
TCAATCCGCAGAGGCGGGTTCCATCGAAAATCCCGGCAAGCCGGGTCGTG
TACTCATGAAACGCCCCCGTCTGTCCAGTCGCTCCGAGAACCTCTCCTCC
GGCAGCCTCAACAGCGTTGGCGTGTAAAAGCTTTCTAGACCAT
BS10667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 2661 | CG9211-PA | 1..2661 | 17..2677 | 13305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-RA | 3276 | CG9211-RA | 327..2987 | 17..2677 | 13305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6945753..6948413 | 2677..17 | 13305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:05:59 has no hits.
BS10667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:17 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 1..2661 | 17..2677 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:01 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 293..2966 | 12..2686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:38:55 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 327..2985 | 17..2675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:39:00 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| iHog-RA | 297..2955 | 17..2675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:27 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ihog-RA | 327..2985 | 17..2675 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:27 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6945755..6948413 | 17..2675 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:38:55 Download gff for
BS10667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6945755..6948413 | 17..2675 | 100 | | Minus |
BS10667.pep Sequence
Translation from 16 to 2676
> BS10667.pep
MTLLTSSLLLFSLLTSRLEAIPVLEKSPAHPAHSAHPAHPAHPAHPAHPS
PGVRILRAPESLVAPLGDEVVLECETSLQPERFEWSHRSSRSPGAGFKYL
KTGTAKANVSQEAAISRLRVLVRPDTLGEYRCVGWFGPLVVTSTIARLEL
ASTSLVDAQESESPLQWRVSAGNSVLWSCGQQVQSNPSASWSYYRNGVEI
KPEFIGTNGNLFLSNVSSESSGSYSCQATNPASGERIQLPGSLQLQVTPE
QRSESKSPHLLRGQPSSQEITIREGSSLLLLCPGVGSPPPTVVWSSPDVV
GAVKNKRSKVFGHALEISNTRVNDAGTYICFQDNGVRPALEHYIKVHVEQ
PPQIVRPPWADLTNEGDRLKLECKATGVPTPEIYWLLNGHSSIDDSEAEL
SNNFLILHSVLKRHAGYVQCFARNRLGEHSAGTLLQVNPKQIQEPRESGG
THRPKPNQGSRQKQMYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKV
QYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRI
LAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWS
LASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMY
EFKLQSFSAASASEFSALKQGRTQRPKTSTTEEPTLQMGDRDTTTPSHNE
TFNMSPMLTGTIGGGAVLILLLISTCFCVCRRRNSRSRGNNPNKPRMAEL
RDDFVPLGNCSPTKQRQRTRHIHITLNPLAQQQQQALEEKNDTDQDAPYY
QRPSSYDYDPTLRRMSSSSLRRSQRTLERAGGSNGSNNGNNNNLNQSAEA
GSIENPGKPGRVLMKRPRLSSRSENLSSGSLNSVGV*
BS10667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ihog-PA | 886 | CG9211-PA | 1..886 | 1..886 | 4642 | 100 | Plus |
| boi-PF | 998 | CG32796-PF | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PE | 998 | CG32796-PE | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PB | 998 | CG32796-PB | 35..998 | 52..886 | 1575 | 40.1 | Plus |
| boi-PG | 1105 | CG32796-PG | 35..813 | 52..782 | 1530 | 44.3 | Plus |
