Clone BS10671 Report

Search the DGRC for BS10671

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptTm1-RC
Protein status:BS10671.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10671.3prime Sequence

958 bp (851 high quality bases) assembled on 2006-04-19

> BS10671.3prime
ATGGTCTAGAAAGCTTTCAGGTGTCGTTGTTGGGATTGTTGTTGTGTTCG
TGGCTTGTGGAGGACAAGGTGGAAGTCTCTTCACCAACAGCAGCAGATGC
AATAGTTCTGGATGCGTTATTGTTGTTGGTGCCACCAATATCGCTGGCAT
TGCATGATTCTGATTTACTGATTTCAATATTGTTACTGTTACTGTTGTTG
TTATTGTTGCTTAGCTTAATAGAAGACAAATTGGTTTTTAGCTGCACCTC
ATCGTATTTCTTGTCAGCCTCCTCAGCAAGGAAACGCGCTTCCTTCAGCT
GATTCTCGAGAGCGTCCATGCGTTCTTCATCGGCAAGGGCGCGGTTCTCA
AGAATTTTGCGAGCACGTTCGCTCTCATCGGCGGCCTGAGAGGCTTCCGA
CAGCTTGGCTGTGGCGGAGCCCAGACGCTCCTCAGAGCGCTCCAAGTCTT
CTTCGAGCAACTGGATGCGACGGTTCAGAGCGGCAACCTCGGATTCGGCC
CGTTTGAGTTGTGTGTTCATGATGTTGTGCAGCTCGTTGCGGATGATGTT
GAACTTCATCATGGTGTCCGAACTGAAGATGGATCTGCCAAAGGCGAGTC
CCGGATAATCCGCACAACGTCCCTTGTTCCGTCGAGCCTCCCGCTCCGCC
ACAATCTCGGCCGCCTCGCTGGTGCATCGCAACTTGGACCATTCCGCCGC
TTGGTTGTCATCGTCGTCGGCCAGTGCGATGCCCTCATCGATGGCCCCGG
CACTGAGATCGGTGGCCAGGCTGTCGCTGCTTTGCTCCATGGGATTGGAT
CGTTTGCTGCGTTCCTTCTTGCCTGAAGATTTCTTCTTCCGGTCGGATTT
CTCAGATTTGTCCGATTTCTCTGACCTTTCACCCTTCTCCCGCTTCTTTT
TTCTGCTCTTGGACGTGGTTGTGCCTGCTGGTGGGGCTGCATCCTCAGCT
ATTAAAGC

BS10671.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PI 1326 Tm1-RI 385..1326 958..17 4660 99.7 Minus
CG4898-PC 1326 Tm1-RC 385..1326 958..17 4660 99.7 Minus
CG4898-PH 2037 Tm1-RH 1096..2037 958..17 4660 99.7 Minus
CG4898-PE 2136 Tm1-RE 1060..1772 958..246 3515 99.7 Minus
CG4898-PK 1557 Tm1-RK 241..494 499..246 1270 100 Minus
CG4898-PJ 858 Tm1-RJ 241..494 499..246 1270 100 Minus
CG4898-PD 858 Tm1-RD 241..494 499..246 1270 100 Minus
CG4898-PB 1020 Tm1-RB 403..656 499..246 1270 100 Minus
CG4898-PF 1506 Tm1-RF 241..494 499..246 1270 100 Minus
CG4898-PG 858 Tm1-RG 241..494 499..246 1270 100 Minus
CG4898-PL 855 Tm1-RL 241..374 499..366 670 100 Minus
CG4898-PA 759 Tm1-RA 145..278 499..366 670 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:36:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 1373..2314 958..17 4680 99.8 Minus
Tm1-RC 2651 CG4898-RC 970..1911 958..17 4680 99.8 Minus
Tm1-RI 2501 CG4898-RI 820..1761 958..17 4680 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288981..15289440 958..499 2270 99.6 Minus
3R 32079331 3R 15296590..15296939 366..17 1750 100 Minus
3R 32079331 3R 15295112..15295246 500..366 675 100 Minus
Blast to na_te.dros performed 2015-02-10 22:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 218..88 165 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2523 211..20 158 58 Minus
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 2641..2671 208..178 110 83.9 Minus

BS10671.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:34 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1096..2037 17..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:49 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 1096..2037 17..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:12 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 820..1764 12..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:03:35 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 820..1764 12..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:03:35 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15288981..15289439 500..958 99 -> Minus
3R 15295113..15295246 366..499 100 -> Minus
3R 15296591..15296942 12..365 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:12 Download gff for BS10671.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114703..11115161 500..958 99 -> Minus
arm_3R 11120835..11120968 366..499 100 -> Minus
arm_3R 11122313..11122664 12..365 99   Minus

BS10671.5prime Sequence

903 bp (863 high quality bases) assembled on 2006-04-19

> BS10671.5prime
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAAATCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTT
GCT

BS10671.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4898-PE 2136 Tm1-RE 672..1562 13..903 4405 99.7 Plus
CG4898-PH 2037 Tm1-RH 708..1598 13..903 4405 99.7 Plus
CG4898-PI 1326 Tm1-RI 1..887 17..903 4385 99.7 Plus
CG4898-PC 1326 Tm1-RC 1..887 17..903 4385 99.7 Plus
CG4898-PA 759 Tm1-RA 153..188 868..903 180 100 Plus
CG4898-PL 855 Tm1-RL 249..284 868..903 180 100 Plus
CG4898-PJ 858 Tm1-RJ 249..284 868..903 180 100 Plus
CG4898-PD 858 Tm1-RD 249..284 868..903 180 100 Plus
CG4898-PG 858 Tm1-RG 249..284 868..903 180 100 Plus
CG4898-PB 1020 Tm1-RB 411..446 868..903 180 100 Plus
CG4898-PF 1506 Tm1-RF 249..284 868..903 180 100 Plus
CG4898-PK 1557 Tm1-RK 249..284 868..903 180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:39:04
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 985..1875 13..903 4425 99.8 Plus
Tm1-RC 2651 CG4898-RC 582..1472 13..903 4425 99.8 Plus
Tm1-RI 2501 CG4898-RI 432..1322 13..903 4425 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:38:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288593..15289440 13..860 4240 100 Plus
3R 32079331 3R 15295112..15295156 859..903 195 95.6 Plus
Blast to na_te.dros performed 2015-02-12 11:39:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 638..711 301..229 115 63.5 Minus

BS10671.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:35 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 708..1598 13..903 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:50 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4898-PH 708..1598 13..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:22 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 432..1322 13..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:54 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 432..1322 13..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:54 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15288593..15289439 13..859 100 -> Plus
3R 15295113..15295156 860..903 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:22 Download gff for BS10671.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114315..11115161 13..859 100 -> Plus
arm_3R 11120835..11120878 860..903 95   Plus

BS10671.complete Sequence

1358 bp assembled on 2006-11-01

GenBank Submission: FJ636713

> BS10671.complete
GAAGTTATCAGTCGACATGGAGCACGATGACTCCAGCACCAGTGGCACTG
GCAGCCATACAGCCAGCAATACCAGTCTAGTTCCCGCCTCGCTGAAGCGT
CGTGGCCACCAGCATCATCCGCGATTCTCGGGCACTCGCCGTCCCAATGT
GCCCAATGTCCAGGAGATTCTGGCCGCACTCTATCGTGGCGACTCAAAGA
GCGCCCTGTCCAATCTGAGAGGAGAGACGCAACCGGAGGAGGAGCAACCA
CAGCAGCAGACGGAGGAGGTGCTGCCACCCAGCAGAAGCACTTTAAGCCT
GCCCCTCAGTGAATCGGTGACCAATTCCCTGGGCAGCAACAGTCCCACGC
CCACAGACGAAAGCAGCGTGCAAGATGAGGGGGCCAGTAATCCGGCAGCA
GCTTTAATAGCTGAGGATGCAGCCCCACCAGCAGGCACAACCACGTCCAA
GAGCAAGAAAAAGAAGCGGGAGAAGGGTGAAAGGTCAGAGAAATCGGACA
AATCTGAGAAATCCGACCGGAAGAAGAAATCTTCAGGCAAGAAGGAACGC
AGCAAACGATCCAATCCCATGGAGCAAAGCAGCGACAGCCTGGCCACCGA
TCTCAGTGCCGGGGCCATCGATGAGGGCATCGCACTGGCCGACGACGATG
ACAACCAAGCGGCGGAATGGTCCAAGTTGCGATGCACCAGCGAGGCGGCC
GAGATTGTGGCGGAGCGGGAGGCTCGACGGAACAAGGGACGTTGTGCGGA
TTATCCGGGACTCGCCTTTGGCAGATCCATCTTCAGTTCGGACACCATGA
TGAAGTTCAACATCATCCGCAACGAGCTGCACAACATCATGAACACACAA
CTCAAACGGGCCGAATCCGAGGTTGCCGCTCTGAACCGTCGCATCCAGTT
GCTCGAAGAAGACTTGGAGCGCTCTGAGGAGCGTCTGGGCTCCGCCACAG
CCAAGCTGTCGGAAGCCTCTCAGGCCGCCGATGAGAGCGAACGTGCTCGC
AAAATTCTTGAGAACCGCGCCCTTGCCGATGAAGAACGCATGGACGCTCT
CGAGAATCAGCTGAAGGAAGCGCGTTTCCTTGCTGAGGAGGCTGACAAGA
AATACGATGAGGTGCAGCTAAAAACCAATTTGTCTTCTATTAAGCTAAGC
AACAATAACAACAACAGTAACAGTAACAATATTGAAATCAGTAAATCAGA
ATCATGCAATGCCAGCGATATTGGTGGCACCAACAACAATAACGCATCCA
GAACTATTGCATCTGCTGCTGTTGGTGAAGAGACTTCCACCTTGTCCTCC
ACAAGCCACGAACACAACAACAATCCCAACAACGACACCTGAAAGCTTTC
TAGACCAT

BS10671.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 2037 CG4898-PH 708..2037 13..1342 6650 100 Plus
Tm1-RC 1326 CG4898-PC 1..1326 17..1342 6630 100 Plus
Tm1-RI 1326 CG4898-PI 1..1326 17..1342 6630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-RH 3054 CG4898-RH 985..2314 13..1342 6650 100 Plus
Tm1-RC 2651 CG4898-RC 582..1911 13..1342 6650 100 Plus
Tm1-RI 2501 CG4898-RI 432..1761 13..1342 6650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15288593..15289440 13..860 4240 100 Plus
3R 32079331 3R 15296590..15296939 993..1342 1750 100 Plus
3R 32079331 3R 15295112..15295246 859..993 675 100 Plus
Blast to na_te.dros performed 2014-11-27 13:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2375..2507 1141..1271 165 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2523 1148..1339 158 58 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 638..711 301..229 115 63.5 Minus

BS10671.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:11 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 708..2037 13..1342 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:46 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 985..2317 13..1347 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:12:23 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 436..1760 17..1341 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:11 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RH 985..2317 13..1347 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:57 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
Tm1-RI 436..1760 17..1341 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:57 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15288597..15289439 17..859 100 -> Plus
3R 15295113..15295246 860..993 100 -> Plus
3R 15296591..15296938 994..1341 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:12:23 Download gff for BS10671.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11114319..11115161 17..859 100 -> Plus
arm_3R 11120835..11120968 860..993 100 -> Plus
arm_3R 11122313..11122660 994..1341 100   Plus

BS10671.pep Sequence

Translation from 16 to 1341

> BS10671.pep
MEHDDSSTSGTGSHTASNTSLVPASLKRRGHQHHPRFSGTRRPNVPNVQE
ILAALYRGDSKSALSNLRGETQPEEEQPQQQTEEVLPPSRSTLSLPLSES
VTNSLGSNSPTPTDESSVQDEGASNPAAALIAEDAAPPAGTTTSKSKKKK
REKGERSEKSDKSEKSDRKKKSSGKKERSKRSNPMEQSSDSLATDLSAGA
IDEGIALADDDDNQAAEWSKLRCTSEAAEIVAEREARRNKGRCADYPGLA
FGRSIFSSDTMMKFNIIRNELHNIMNTQLKRAESEVAALNRRIQLLEEDL
ERSEERLGSATAKLSEASQAADESERARKILENRALADEERMDALENQLK
EARFLAEEADKKYDEVQLKTNLSSIKLSNNNNNSNSNNIEISKSESCNAS
DIGGTNNNNASRTIASAAVGEETSTLSSTSHEHNNNPNNDT*

BS10671.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Tm1-PH 678 CG4898-PH 238..678 1..441 2205 100 Plus
Tm1-PC 441 CG4898-PC 1..441 1..441 2205 100 Plus
Tm1-PI 441 CG4898-PI 1..441 1..441 2205 100 Plus
Tm1-PE 711 CG4898-PE 226..620 1..395 1828 93.7 Plus
Tm1-PO 285 CG4898-PO 75..194 276..395 415 75.8 Plus