Clone BS10673 Report

Search the DGRC for BS10673

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:73
Vector:pDNR-Dual
Associated Gene/Transcriptmfrn-RA
Protein status:BS10673.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10673.3prime Sequence

909 bp (773 high quality bases) assembled on 2006-04-19

> BS10673.3prime
ATGGTCTAGAAAGCTTCTACGTGCTGAAGCCCCGCTCGTAGGGACTCTTC
ACGTCCGTGTGCCGCGTGTGCAGATTGATTGTTGGCCCGGCGGGCCGCGT
CGACAGCTCGCACACCGTCTTAATGGCACCGGAGGCATTGACCGAGGTCG
GGGCAGAGTGCAGGGTGGCCGTGGTGTCCTTCTCCTTTGCCGCCTCGCGC
TCCTGATCGATCTGCTCCTCATCCGTAGTCCTCGGCAGCACGTAGTCCGC
TTTGCGGGGCTCCGAGCTGCCCGTAATTGACGATTTGTACTGATCAGCGT
CCAGGCCGCACAGGTAGAACTTGAAGAACTCGTACGTCGACCAGCAGATG
GCCGTGGCGGGCATTGAGTACAGAACGCGGGCGGTCGTGCCCCTAAAGAA
GCCCAATGGACCGGCCATGTGGTAGATCTTTCGACTGGCCTCGATCATGC
CGCGCGTCAGTCCTGTCTCCTGAGTATTTAGTAGCGTCTTGATCACGTCC
AGGGGCGTGGTTACAGCCGCCGCACACGCACCGGCTGCTGCACCCGCTGC
CATATGCACTGGTGGATTGTATTTGCGTTCCAGATTCATTTTGTTCTGGA
AAAACTCGTATGTGGTAAAATGTATTGTCTGATATGGTAGATTCATGACC
AGTTGCGTGCCATATGCCCGGTAGAAGGCCTTGAAGCCTTCCCTCTTGTA
GATATCCCGCACGCAGGATACCACCGATGTGTAGGGCGAGTTGTACATCT
GCATACGCTGTTTGATCACATCCGTGGGACTAGAAATGGCGTCGTGTATG
AGGGTGGGCACCGCTCCCGAAATCACGTAGTTGAGGTTTCTCACCGATGT
GAACTTGGCCGTGAGCTCCTTGGTCATCTCGTAGGCGGCAAAGTATAGCG
AGTGTGCTG

BS10673.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4963-PA 1140 CG4963-RA 248..1140 909..17 4440 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 17:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 959..1851 909..17 4450 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 17:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27943982..27944394 17..429 2065 100 Plus
3R 32079331 3R 27944779..27945015 590..826 1170 99.6 Plus
3R 32079331 3R 27944553..27944714 428..589 810 100 Plus
3R 32079331 3R 27945077..27945160 826..909 420 100 Plus
Blast to na_te.dros performed on 2015-02-06 17:44:48 has no hits.

BS10673.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:37 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 248..1140 17..909 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:51 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 248..1140 17..909 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:34:34 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 959..1853 13..909 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:35:48 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 959..1853 13..909 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:35:48 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27943980..27944392 13..427 99 <- Plus
3R 27944553..27944714 428..589 100 <- Plus
3R 27944779..27945014 590..825 99 <- Plus
3R 27945077..27945160 826..909 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:34:34 Download gff for BS10673.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23769702..23770114 13..427 99 <- Plus
arm_3R 23770275..23770436 428..589 100 <- Plus
arm_3R 23770501..23770736 590..825 99 <- Plus
arm_3R 23770799..23770882 826..909 100   Plus

BS10673.5prime Sequence

926 bp (840 high quality bases) assembled on 2006-04-19

> BS10673.5prime
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTC
AAGTTCTACCTGTGCGGCCTGGACGCTGATCAGTACAAATCGTCAATTAC
GGGCAGCTCGGAGCCCCGCAAAGCGG

BS10673.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4963-PA 1140 CG4963-RA 1..910 17..926 4550 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:44:25
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 711..1621 16..926 4555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27944779..27945015 583..347 1185 100 Minus
3R 32079331 3R 27944212..27944394 926..744 915 100 Minus
3R 32079331 3R 27944553..27944714 745..584 810 100 Minus
3R 32079331 3R 27945077..27945203 347..221 635 100 Minus
3R 32079331 3R 27947194..27947311 133..16 590 100 Minus
3R 32079331 3R 27945252..27945342 222..132 455 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:44:22 has no hits.

BS10673.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:38 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 1..910 17..926 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:09:53 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4963-PA 1..910 17..926 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:16:56 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 706..1621 12..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:57 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 706..1621 12..926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:57 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27947194..27947316 12..133 98   Minus
3R 27945077..27945201 223..347 100 <- Minus
3R 27945252..27945340 134..222 100 <- Minus
3R 27944212..27944392 746..926 100 <- Minus
3R 27944553..27944714 584..745 100 <- Minus
3R 27944779..27945014 348..583 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:16:56 Download gff for BS10673.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23769934..23770114 746..926 100 <- Minus
arm_3R 23770275..23770436 584..745 100 <- Minus
arm_3R 23770501..23770736 348..583 100 <- Minus
arm_3R 23770799..23770923 223..347 100 <- Minus
arm_3R 23770974..23771062 134..222 100 <- Minus
arm_3R 23772916..23773038 12..133 98   Minus

BS10673.complete Sequence

1172 bp assembled on 2006-11-01

GenBank Submission: FJ636714

> BS10673.complete
GAAGTTATCAGTCGACATGAACATCGACGACTACGAATCGCTGCCCACCA
CCAGTGTGGGTGTCAATATGACGGCGGGCGCAATTGCGGGCGTGCTGGAG
CATGTGGTCATGTATCCGCTGGACTCCGTCAAGACGCGAATGCAGAGCCT
TTCACCGCCCACAAAAAACATGAACATAGTGTCAACCCTTCGGACTATGA
TCACGCGTGAAGGCCTGTTAAGACCCATTCGGGGAGCCAGCGCCGTGGTG
CTGGGTGCTGGACCAGCACACTCGCTATACTTTGCCGCCTACGAGATGAC
CAAGGAGCTCACGGCCAAGTTCACATCGGTGAGAAACCTCAACTACGTGA
TTTCGGGAGCGGTGGCCACCCTCATACACGACGCCATTTCTAGTCCCACG
GATGTGATCAAACAGCGTATGCAGATGTACAACTCGCCCTACACATCGGT
GGTATCCTGCGTGCGGGATATCTACAAGAGGGAAGGCTTCAAGGCCTTCT
ACCGGGCATATGGCACGCAACTGGTCATGAATCTACCATATCAGACAATA
CATTTTACCACATACGAGTTTTTCCAGAACAAAATGAATCTGGAACGCAA
ATACAATCCACCAGTGCATATGGCAGCGGGTGCAGCAGCCGGTGCGTGTG
CGGCGGCTGTAACCACGCCCCTGGACGTGATCAAGACGCTACTAAATACT
CAGGAGACAGGACTGACGCGCGGCATGATCGAGGCCAGTCGAAAGATCTA
CCACATGGCCGGTCCATTGGGCTTCTTTAGGGGCACGACCGCCCGCGTTC
TGTACTCAATGCCCGCCACGGCCATCTGCTGGTCGACGTACGAGTTCTTC
AAGTTCTACCTGTGCGGCCTGGACGCTGATCAGTACAAATCGTCAATTAC
GGGCAGCTCGGAGCCCCGCAAAGCGGACTACGTGCTGCCGAGGACTACGG
ATGAGGAGCAGATCGATCAGGAGCGCGAGGCGGCAAAGGAGAAGGACACC
ACGGCCACCCTGCACTCTGCCCCGACCTCGGTCAATGCCTCCGGTGCCAT
TAAGACGGTGTGCGAGCTGTCGACGCGGCCCGCCGGGCCAACAATCAATC
TGCACACGCGGCACACGGACGTGAAGAGTCCCTACGAGCGGGGCTTCAGC
ACGTAGAAGCTTTCTAGACCAT

BS10673.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 1140 CG4963-PA 1..1140 17..1156 5700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-RA 3037 CG4963-RA 711..1851 16..1156 5705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27943982..27944394 1156..744 2065 100 Minus
3R 32079331 3R 27944779..27945015 583..347 1185 100 Minus
3R 32079331 3R 27944553..27944714 745..584 810 100 Minus
3R 32079331 3R 27945077..27945203 347..221 635 100 Minus
3R 32079331 3R 27947194..27947311 133..16 590 100 Minus
3R 32079331 3R 27945252..27945342 222..132 455 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:42:52 has no hits.

BS10673.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:12 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
CG4963-RA 1..1140 17..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:48 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
CG4963-RA 694..1841 12..1160 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:37 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 712..1851 17..1156 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:50 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
mfrn-RA 712..1851 17..1156 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:50 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27945077..27945201 223..347 100 <- Minus
3R 27945252..27945340 134..222 100 <- Minus
3R 27947194..27947310 17..133 100   Minus
3R 27943982..27944392 746..1156 100 <- Minus
3R 27944553..27944714 584..745 100 <- Minus
3R 27944779..27945014 348..583 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:37 Download gff for BS10673.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23769704..23770114 746..1156 100 <- Minus
arm_3R 23770275..23770436 584..745 100 <- Minus
arm_3R 23770501..23770736 348..583 100 <- Minus
arm_3R 23770799..23770923 223..347 100 <- Minus
arm_3R 23770974..23771062 134..222 100 <- Minus
arm_3R 23772916..23773032 17..133 100   Minus

BS10673.pep Sequence

Translation from 16 to 1155

> BS10673.pep
MNIDDYESLPTTSVGVNMTAGAIAGVLEHVVMYPLDSVKTRMQSLSPPTK
NMNIVSTLRTMITREGLLRPIRGASAVVLGAGPAHSLYFAAYEMTKELTA
KFTSVRNLNYVISGAVATLIHDAISSPTDVIKQRMQMYNSPYTSVVSCVR
DIYKREGFKAFYRAYGTQLVMNLPYQTIHFTTYEFFQNKMNLERKYNPPV
HMAAGAAAGACAAAVTTPLDVIKTLLNTQETGLTRGMIEASRKIYHMAGP
LGFFRGTTARVLYSMPATAICWSTYEFFKFYLCGLDADQYKSSITGSSEP
RKADYVLPRTTDEEQIDQEREAAKEKDTTATLHSAPTSVNASGAIKTVCE
LSTRPAGPTINLHTRHTDVKSPYERGFST*

BS10673.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
mfrn-PA 379 CG4963-PA 1..379 1..379 1954 100 Plus
aralar1-PB 679 CG2139-PB 331..606 19..282 277 29.3 Plus
aralar1-PD 682 CG2139-PD 334..609 19..282 277 29.3 Plus
aralar1-PA 682 CG2139-PA 334..609 19..282 277 29.3 Plus
aralar1-PF 694 CG2139-PF 334..609 19..282 277 29.3 Plus