Clone Sequence Records
BS10676.3prime Sequence
850 bp (807 high quality bases) assembled on 2006-04-19
> BS10676.3prime
ATGGTCTAGAAAGCTTCTAATACAAAATGGGACGCTGGGGCATGCAGAGA
TTGTAGTAGCTGCCCTTGGCCCAAAAGTCCATGCCCTTCCAGCCGCACCA
ACCTTTAATTTGAATGGTGGCCAAATCATCGGCACCTGTATAATGGGGAT
CCAAGATGAGGAACTTCACCTGACCCGTCTGCACGCAGTAGTCCACCCCG
ATAATGGTGTGGGCCAGAACACCGCCACCAATCATTACCGGTGTACCTTG
CGTTTGGAAATGCATCGCCAGCTCGGAGGCAATAGTCGCCAGCTCAGCTC
CAGAGGCTACGTGCAGAATTTTTGAGTCCACGTTAAGGAATCCCTGCAGA
CACATGCTGATTTCTGTGGAACCAATCCACTGAGAAGAACCCACGAATGC
AGCAGGTTTGTCGTTGATCTTGTGAAGGTATTCCTGCACCTCCAGATGCG
TCGGAATCGGTGCGTTCGTATAACCCTGCAGCACAAACCAGGAGCAGATC
GTCTGCAGCGAGCGATATGCGCATCCCCATCCCTTGTCCTGCACCTGCTG
TTGCAGGTAATGATAGTAATGGTAGTTACCATTTACTAAGTACTCTTTGC
CGTCGACAACTCCACTGGGACGTAATCCGATGTGGGTATTTAGCAGCGGA
GTCCATGGTGCGTCCTCCGTTTCACCTAGGAAAAGCATCTGGTTGGCCCT
GCGGAAATAAGGACGACTGATGGGCAAAGCAAACTGTCGATGCAGGCGCT
TGCGTCTCATTAGCATGCTTGGTGTATCGTCACTCAGACCTTCCAGATAG
GCGCAGCTCACGAAGTGACCAAACTCTTGTGGGTAGAAGTGATAGCTAGC
BS10676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 1824 | CG16979-RA | 991..1824 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:41:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 1085..1918 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:41:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15577713..15578546 | 850..17 | 4170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 16:41:07 has no hits.
BS10676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:43 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 991..1824 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:00 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 991..1824 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:15 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1085..1921 | 11..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:29 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1085..1921 | 11..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:29 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15577713..15578549 | 11..850 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:15 Download gff for
BS10676.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15570813..15571649 | 11..850 | 99 | | Minus |
BS10676.5prime Sequence
889 bp (764 high quality bases) assembled on 2006-04-19
> BS10676.5prime
GAAGTTATCAGTCGACATGCTACCCAAACTAAAAATATCCGCATTCCTGT
TGAAGCGCCTGGAGCGAACAAAGCAGCAGTGCAGTGGATGCTTGTTTGGA
GTTTTCTATGGAGAAGGTACCTTACTCCTACTGAGCTTCAACATTGAGTC
CAGTTTGGGACAACTGAACTACGAGCAGATCCAACACAGATTCCCGGCGG
AACTGGATTTATGCGGACTGGTCAAGTTTGGTGGTTGCACCGATGGAGAG
GCGCACCTTAATGAGGTCATCAAATCTGTGGATATCACCGATAATCCCAT
CCTACTGCAATGCGAATTGGGCACCTTGGTGGGCTTGCGGGCCTCGTTTT
TCGTCCATGGAAAACTGGAGGAGGTACCCTACGAGGTTATGGAGGCACAT
CAGCTGTACAACGACTTCTGCTTCACCCGGCTGCAGTGCGGATTCTTTCT
GCAAACGGCCGCCACACCGGAATCCGTGGCCCGGGAAATGCATGTGCTGC
GCAAAAGGGTAGCCGACGGAAATCTAGTGTTTAACGTTCCGCAGACAAAG
ATTTTCATTAATAACTACGGGCCACTGGACAAACAGTTTAGCGGCGATTC
CCAAATTCAGGATCTTATAGACGTCATTCCAACTCCAGGACATGAAAAGG
AGACTGCCAGTGTCGACAAAAAGAAGCTTAAAGGTCAGAACACGCCAGTC
AAGAGACTGGCTCCGACTGGCTGCGACTACGAGGTGATCCCCATCGATGT
GATGCGCTCGCGCAGTCGTGATCCCGTGTCCGGAGAGCCACCTCATCCGG
CACTCAGCATTGCTGTGACCAATGAGGAACAGATCCGAGTCCAGGTACCA
TTAGAGATCGAAGCCATGGCCATTCTCTGCCGCCAAACG
BS10676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 1824 | CG16979-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..967 | 17..889 | 4350 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15577595 | 54..889 | 4165 | 99.9 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:54:27 has no hits.
BS10676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:44 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:02 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-PA | 1..873 | 17..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:52:42 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..967 | 5..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:43 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 84..967 | 5..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:43 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576668..15576702 | 21..55 | 100 | -> | Plus |
| 3L | 15576762..15577595 | 56..889 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:52:42 Download gff for
BS10676.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569768..15569802 | 21..55 | 100 | -> | Plus |
| arm_3L | 15569862..15570695 | 56..889 | 99 | | Plus |
BS10676.complete Sequence
1856 bp assembled on 2007-11-30
GenBank Submission: FJ636715
> BS10676.complete
GAAGTTATCAGTCGACATGCTACCCAAACTAAAAATATCCGCATTCCTGT
TGAAGCGCCTGGAGCGAACAAAGCAGCAGTGCAGTGGATGCTTGTTTGGA
GTTTTCTATGGAGAAGGTACCTTACTCCTACTGAGCTTCAACATTGAGTC
CAGTTTGGGACAACTGAACTACGAGCAGATCCAACACAGATTCCCGGCGG
AACTGGATTTATGCGGACTGGTCAAGTTTGGTGGTTGCACCGATGGAGAG
GCGCACCTTAATGAGGTCATCAAATCTGTGGATATCACCGATAATCCCAT
CCTACTGCAATGCGAATTGGGCACCTTGGTGGGCTTGCGGGCCTCGTTTT
TCGTCCATGGAAAACTGGAGGAGGTACCCTACGAGGTTATGGAGGCACAT
CAGCTGTACAACGACTTCTGCTTCACCCGGCTGCAGTGCGGATTCTTTCT
GCAAACGGCCGCCACACCGGAATCCGTGGCCCGGGAAATGCATGTGCTGC
GCAAAAGGGTAGCCGACGGAAATCTAGTGTTTAACGTTCCGCAGACAAAG
ATTTTCATTAATAACTACGGGCCACTGGACAAACAGTTTAGCGGCGATTC
CCAAATTCAGGATCTTATAGACGTCATTCCAACTCCAGGACATGAAAAGG
AGACTGCCAGTGTCGACAAAAAGAAGCTTAAAGGTCAGAACACGCCAGTC
AAGAGACTGGCTCCGACTGGCTGCGACTACGAGGTGATCCCCATCGATGT
GATGCGCTCGCGCAGTCGTGATCCCGTGTCCGGAGAGCCACCTCATCCGG
CACTCAGCATTGCTGTGACCAATGAGGAACAGATCCGAGTCCAGGTACCA
TTAGAGATCGAAGCCATGGCCATTCTCTGCCGCAAAACGAAGCTCCAACG
GCTATACGACGTACTCATCGAGAGCATCTGCAGAGGTCTCAGATTGTTCG
AACTGAGCCTGATTGAGCATCTCACGGAGTCGGGAAGTGGAAAGCTGCTG
GTGCCCGCTAGCTATCACTTCTACCCACAAGAGTTTGGTCACTTCGTGAG
CTGCGCCTATCTGGAAGGTCTGAGTGACGATACACCAAGCATGCTAATGA
GACGCAAGCGCCTGCATCGACAGTTTGCTTTGCCCATCAGTCGTCCTTAT
TTCCGCAGGGCCAACCAGATGCTTTTCCTAGGTGAAACGGAGGACGCACC
ATGGACTCCGCTGCTAAATACCCACATCGGATTACGTCCCAGTGGAGTTG
TCGACGGCAAAGAGTACTTAGTAAATGGTAACTACCATTACTATCATTAC
CTGCAACAGCAGGTGCAGGACAAGGGATGGGGATGCGCATATCGCTCGCT
GCAGACGATCTGCTCCTGGTTTGTGCTGCAGGGTTATACGAACGCACCGA
TTCCGACGCATCTGGAGGTGCAGGAATACCTTCACAAGATCAACGACAAA
CCTGCTGCATTCGTGGGTTCTTCTCAGTGGATTGGTTCCACAGAAATCAG
CATGTGTCTGCAGGGATTCCTTAACGTGGACTCAAAAATTCTGCACGTAG
CCTCTGGAGCTGAGCTGGCGACTATTGCCTCCGAGCTGGCGATGCATTTC
CAAACGCAAGGTACACCGGTAATGATTGGTGGCGGTGTTCTGGCCCACAC
CATTATCGGGGTGGACTACTGCGTGCAGACGGGTCAGGTGAAGTTCCTCA
TCTTGGATCCCCATTATACAGGTGCCGATGATTTGGCCACCATTCAAATT
AAAGGTTGGTGCGGCTGGAAGGGCATGGACTTTTGGGCCAAGGGCAGCTA
CTACAATCTCTGCATGCCCCAGCGTCCCATTTTGTATTAGAAGCTTTCTA
GACCAT
BS10676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 1824 | CG16979-PA | 1..1824 | 17..1840 | 9120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-RA | 2046 | CG16979-RA | 95..1918 | 17..1840 | 9120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15576760..15578546 | 54..1840 | 8935 | 100 | Plus |
| 3L | 28110227 | 3L | 15576664..15576702 | 17..55 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:59:02 has no hits.
BS10676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:19 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 1..1824 | 17..1840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:05 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 88..1925 | 5..1846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:20 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 95..1918 | 17..1840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:35 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 99..1922 | 17..1840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:50 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16979-RA | 95..1918 | 17..1840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:50 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15576664..15576702 | 17..55 | 100 | -> | Plus |
| 3L | 15576762..15578546 | 56..1840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:20 Download gff for
BS10676.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15569764..15569802 | 17..55 | 100 | -> | Plus |
| arm_3L | 15569862..15571646 | 56..1840 | 100 | | Plus |
BS10676.pep Sequence
Translation from 16 to 1839
> BS10676.pep
MLPKLKISAFLLKRLERTKQQCSGCLFGVFYGEGTLLLLSFNIESSLGQL
NYEQIQHRFPAELDLCGLVKFGGCTDGEAHLNEVIKSVDITDNPILLQCE
LGTLVGLRASFFVHGKLEEVPYEVMEAHQLYNDFCFTRLQCGFFLQTAAT
PESVAREMHVLRKRVADGNLVFNVPQTKIFINNYGPLDKQFSGDSQIQDL
IDVIPTPGHEKETASVDKKKLKGQNTPVKRLAPTGCDYEVIPIDVMRSRS
RDPVSGEPPHPALSIAVTNEEQIRVQVPLEIEAMAILCRKTKLQRLYDVL
IESICRGLRLFELSLIEHLTESGSGKLLVPASYHFYPQEFGHFVSCAYLE
GLSDDTPSMLMRRKRLHRQFALPISRPYFRRANQMLFLGETEDAPWTPLL
NTHIGLRPSGVVDGKEYLVNGNYHYYHYLQQQVQDKGWGCAYRSLQTICS
WFVLQGYTNAPIPTHLEVQEYLHKINDKPAAFVGSSQWIGSTEISMCLQG
FLNVDSKILHVASGAELATIASELAMHFQTQGTPVMIGGGVLAHTIIGVD
YCVQTGQVKFLILDPHYTGADDLATIQIKGWCGWKGMDFWAKGSYYNLCM
PQRPILY*
BS10676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16979-PA | 607 | CG16979-PA | 1..607 | 1..607 | 3225 | 100 | Plus |
| CG30157-PB | 234 | CG30157-PB | 28..234 | 398..604 | 264 | 33.5 | Plus |
| CG30157-PA | 234 | CG30157-PA | 28..234 | 398..604 | 264 | 33.5 | Plus |
