Clone Sequence Records
BS10678.3prime Sequence
902 bp (786 high quality bases) assembled on 2006-04-19
> BS10678.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTCTTGCCCTTGCCCTTCTTGCCC
TTGCCCTTCTTGCCCTTCTTCCCCTTCTTGCCACCGGTTAGCATCTCCTC
GGAAACATAGGTCTCCGTGGTCACCTTGCTGATCGGAAGGGTTACGGGCT
GCTTGGGCGTCCGCAGCTCGATCTCGATGGTATTCTTCTTGTGCTGCGAC
TTGGCCTTACTTCCCAGTTTTACTAGGAACACGTCGCTGTCGGTCTCCTC
GCAGGTCTTGTAGCAAACCTCGATACCCTTGCGCCTTGTGTCCAAATTGA
CACCCTTCATGGTGTCCATGATGTCCTTCCGCTCGACCTGCATGCAACAT
GATCGCTGGTTCTGGACGGGACAGTGCGCGGGCACGATGGGATCGGATCC
GCCGCAGAGTCGCTGGCGGTAGCAGTCGACCTTGGCCTCCTGGAAGTCGC
AGGCCTCCTTGATCTTCGAGAAGGGCACGTAGTAGTTGTCGGTCTCGCAG
GCATCGTTCCCAGAGTACTTGATATTGGCTCGCACCTTGGGGATGTTCGG
GTGGTTGATGATGCGGCCGCCGGTCCGGCGCTTGATGTGGTTGCGAGCGA
AGGAGCTGCGCTGGAGCATATCGTGCAGGCAGGACTCCTTTGCGGGCTCG
CAGTCATTGGGGTCATCGCGATAGCAGGGATCATCGCCTGCGCCCAGATT
GGGCGCAGTCTCGCTGCCATCCATCACGCTCTCCACCTTGTGGGTGTTCT
TGAGTACGCGTATGGTCAGACCGCTGCCATTGAGGCAGGCCTCGAACTCG
TCGTACGCCTCCGGACCCGGATCCGGCTTGGTCGGGTGGATGAAGCAGGG
AGCCAACTCCGGACTGCAGTCGCAATCGCAGGCGCACTGACAGCAGCCAT
CA
BS10678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-PC | 999 | CG9133-RC | 114..999 | 902..17 | 4405 | 99.8 | Minus |
CG9133-PB | 999 | CG9133-RB | 114..999 | 902..17 | 4405 | 99.8 | Minus |
CG9133-PD | 930 | CG9133-RD | 45..930 | 902..17 | 4405 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-RD | 3109 | CG9133-RD | 1977..2863 | 902..16 | 4420 | 99.9 | Minus |
CG9133-RB | 1536 | CG9133-RB | 404..1290 | 902..16 | 4420 | 99.9 | Minus |
CG9133-RC | 3036 | CG9133-RC | 1904..2790 | 902..16 | 4420 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1254411..1255046 | 902..267 | 3165 | 99.8 | Minus |
3L | 28110227 | 3L | 1255486..1255740 | 270..16 | 1275 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 12:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3630..3710 | 497..418 | 114 | 61.7 | Minus |
BS10678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:47 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-PB | 115..999 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:05 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-PD | 46..930 | 17..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:20 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-RC | 1905..2790 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:38:53 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-RC | 1905..2790 | 16..901 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:38:53 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1255488..1255740 | 16..268 | 100 | | Minus |
3L | 1254412..1255044 | 269..901 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:20 Download gff for
BS10678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1254412..1255044 | 269..901 | 99 | -> | Minus |
arm_3L | 1255488..1255740 | 16..268 | 100 | | Minus |
BS10678.5prime Sequence
846 bp (809 high quality bases) assembled on 2006-04-19
> BS10678.5prime
GAAGTTATCAGTCGACATGGCCAAGAAGAGGGGAAGAAAGGGCAAGAAGG
GCAAGAAGCCAAAGGTCGACTGCAAGTTCAAGATCACCAATGAGATGCTC
AAGCCCATGAACGAGAATGTGGACGACTGTGATGGCTGCTGTCAGTGCGC
CTGCGATTGCGACTGCAGTCCGGAGTTGGCTCCCTGCTTCATCCAGCCGA
CCAAGCCGGATCCGGGTCCGGAGGCGTACGACGAGTTCGAGGCCTGCCTC
AATGGCAGCGGTCTGACCATACGCGTACTCAAGAACACCCACAAGGTGGA
GAGCGTGATGGATGGCAGCGAGACTGCGCCCAATCTGGGCGCAGGCGATG
ATCCCTGCTATCGCGATGACCCCAATGACTGCGAGCCCGCAAAGGAGTCC
TGCCTGCACGATATGCTCCAGCGCAGCTCCTTCGCTCGCAACCACATCAA
GCGCCGGACCGGCGGCCGCATCATCAACCACCCGAACATCCCCAAGGTGC
GAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGACCGACAACTAC
TACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCAA
GGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGC
CCGCGCACTGTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAG
CGGAAGGACATCATGGACACCATGAAGGGTGTCAATTTGGACACAAGGCG
CAAGGGTATCGAGGTTTGCTACAAGACCTGCGAGGAGACCGACAGCGACG
TGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGCACAAGAA
BS10678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-PC | 999 | CG9133-RC | 1..830 | 17..846 | 4150 | 100 | Plus |
CG9133-PB | 999 | CG9133-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
CG9133-PD | 930 | CG9133-RD | 32..761 | 117..846 | 3650 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-RB | 1536 | CG9133-RB | 289..1120 | 15..846 | 4160 | 100 | Plus |
CG9133-RC | 3036 | CG9133-RC | 1789..2620 | 15..846 | 4160 | 100 | Plus |
CG9130-RA | 3036 | CG9130-RA | 1789..2620 | 15..846 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1254398..1255046 | 117..765 | 3245 | 100 | Plus |
3L | 28110227 | 3L | 1254223..1254324 | 15..116 | 510 | 100 | Plus |
3L | 28110227 | 3L | 1255486..1255570 | 762..846 | 425 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3630..3710 | 535..614 | 114 | 61.7 | Plus |
BS10678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:48 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-PB | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:07 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-PB | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:15 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9130-RA | 1785..2620 | 9..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:42 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9130-RA | 1785..2620 | 9..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:42 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1254219..1254324 | 9..116 | 97 | -> | Plus |
3L | 1254398..1255044 | 117..763 | 100 | -> | Plus |
3L | 1255488..1255570 | 764..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:15 Download gff for
BS10678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1254219..1254324 | 9..116 | 97 | -> | Plus |
arm_3L | 1254398..1255044 | 117..763 | 100 | -> | Plus |
arm_3L | 1255488..1255570 | 764..846 | 100 | | Plus |
BS10678.complete Sequence
1031 bp assembled on 2006-11-01
GenBank Submission: FJ636716
> BS10678.complete
GAAGTTATCAGTCGACATGGCCAAGAAGAGGGGAAGAAAGGGCAAGAAGG
GCAAGAAGCCAAAGGTCGACTGCAAGTTCAAGATCACCAATGAGATGCTC
AAGCCCATGAACGAGAATGTGGACGACTGTGATGGCTGCTGTCAGTGCGC
CTGCGATTGCGACTGCAGTCCGGAGTTGGCTCCCTGCTTCATCCAGCCGA
CCAAGCCGGATCCGGGTCCGGAGGCGTACGACGAGTTCGAGGCCTGCCTC
AATGGCAGCGGTCTGACCATACGCGTACTCAAGAACACCCACAAGGTGGA
GAGCGTGATGGATGGCAGCGAGACTGCGCCCAATCTGGGCGCAGGCGATG
ATCCCTGCTATCGCGATGACCCCAATGACTGCGAGCCCGCAAAGGAGTCC
TGCCTGCACGATATGCTCCAGCGCAGCTCCTTCGCTCGCAACCACATCAA
GCGCCGGACCGGCGGCCGCATCATCAACCACCCGAACATCCCCAAGGTGC
GAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGACCGACAACTAC
TACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCAA
GGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGC
CCGCGCACTGTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAG
CGGAAGGACATCATGGACACCATGAAGGGTGTCAATTTGGACACAAGGCG
CAAGGGTATCGAGGTTTGCTACAAGACCTGCGAGGAGACCGACAGCGACG
TGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGCACAAGAAGAAT
ACCATCGAGATCGAGCTGCGGACGCCCAAGCAGCCCGTAACCCTTCCGAT
CAGCAAGGTGACCACGGAGACCTATGTTTCCGAGGAGATGCTAACCGGTG
GCAAGAAGGGGAAGAAGGGCAAGAAGGGCAAGGGCAAGAAGGGCAAGGGC
AAGAAGAAGAAGTAGAAGCTTTCTAGACCAT
BS10678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-RB | 999 | CG9133-PB | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG9133-RC | 999 | CG9133-PC | 1..999 | 17..1015 | 4995 | 100 | Plus |
CG9133-RD | 930 | CG9133-PD | 32..930 | 117..1015 | 4495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-RB | 1536 | CG9133-RB | 289..1290 | 15..1016 | 5010 | 100 | Plus |
CG9133-RC | 3036 | CG9133-RC | 1789..2790 | 15..1016 | 5010 | 100 | Plus |
CG9130-RA | 3036 | CG9130-RA | 1789..2790 | 15..1016 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1254398..1255046 | 117..765 | 3245 | 100 | Plus |
3L | 28110227 | 3L | 1255486..1255740 | 762..1016 | 1275 | 100 | Plus |
3L | 28110227 | 3L | 1254223..1254324 | 15..116 | 510 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3630..3710 | 535..614 | 114 | 61.7 | Plus |
BS10678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:02 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-RB | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:03 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9133-RB | 285..1290 | 9..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:14 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9130-RA | 1791..2789 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:03 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9130-RA | 1785..2790 | 9..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:48 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9130-RA | 1791..2789 | 17..1015 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:48 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1254225..1254324 | 17..116 | 100 | -> | Plus |
3L | 1254398..1255044 | 117..763 | 100 | -> | Plus |
3L | 1255488..1255739 | 764..1015 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:14 Download gff for
BS10678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1254225..1254324 | 17..116 | 100 | -> | Plus |
arm_3L | 1254398..1255044 | 117..763 | 100 | -> | Plus |
arm_3L | 1255488..1255739 | 764..1015 | 100 | | Plus |
BS10678.pep Sequence
Translation from 16 to 1014
> BS10678.pep
MAKKRGRKGKKGKKPKVDCKFKITNEMLKPMNENVDDCDGCCQCACDCDC
SPELAPCFIQPTKPDPGPEAYDEFEACLNGSGLTIRVLKNTHKVESVMDG
SETAPNLGAGDDPCYRDDPNDCEPAKESCLHDMLQRSSFARNHIKRRTGG
RIINHPNIPKVRANIKYSGNDACETDNYYVPFSKIKEACDFQEAKVDCYR
QRLCGGSDPIVPAHCPVQNQRSCCMQVERKDIMDTMKGVNLDTRRKGIEV
CYKTCEETDSDVFLVKLGSKAKSQHKKNTIEIELRTPKQPVTLPISKVTT
ETYVSEEMLTGGKKGKKGKKGKGKKGKGKKKK*
BS10678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9133-PB | 332 | CG9133-PB | 1..332 | 1..332 | 1819 | 100 | Plus |
CG9133-PC | 332 | CG9133-PC | 1..332 | 1..332 | 1819 | 100 | Plus |
CG9133-PD | 309 | CG9133-PD | 8..309 | 31..332 | 1640 | 98.7 | Plus |