Clone BS10678 Report

Search the DGRC for BS10678

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG9133-RB
Protein status:BS10678.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10678.3prime Sequence

902 bp (786 high quality bases) assembled on 2006-04-19

> BS10678.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCTTCTTGCCCTTGCCCTTCTTGCCC
TTGCCCTTCTTGCCCTTCTTCCCCTTCTTGCCACCGGTTAGCATCTCCTC
GGAAACATAGGTCTCCGTGGTCACCTTGCTGATCGGAAGGGTTACGGGCT
GCTTGGGCGTCCGCAGCTCGATCTCGATGGTATTCTTCTTGTGCTGCGAC
TTGGCCTTACTTCCCAGTTTTACTAGGAACACGTCGCTGTCGGTCTCCTC
GCAGGTCTTGTAGCAAACCTCGATACCCTTGCGCCTTGTGTCCAAATTGA
CACCCTTCATGGTGTCCATGATGTCCTTCCGCTCGACCTGCATGCAACAT
GATCGCTGGTTCTGGACGGGACAGTGCGCGGGCACGATGGGATCGGATCC
GCCGCAGAGTCGCTGGCGGTAGCAGTCGACCTTGGCCTCCTGGAAGTCGC
AGGCCTCCTTGATCTTCGAGAAGGGCACGTAGTAGTTGTCGGTCTCGCAG
GCATCGTTCCCAGAGTACTTGATATTGGCTCGCACCTTGGGGATGTTCGG
GTGGTTGATGATGCGGCCGCCGGTCCGGCGCTTGATGTGGTTGCGAGCGA
AGGAGCTGCGCTGGAGCATATCGTGCAGGCAGGACTCCTTTGCGGGCTCG
CAGTCATTGGGGTCATCGCGATAGCAGGGATCATCGCCTGCGCCCAGATT
GGGCGCAGTCTCGCTGCCATCCATCACGCTCTCCACCTTGTGGGTGTTCT
TGAGTACGCGTATGGTCAGACCGCTGCCATTGAGGCAGGCCTCGAACTCG
TCGTACGCCTCCGGACCCGGATCCGGCTTGGTCGGGTGGATGAAGCAGGG
AGCCAACTCCGGACTGCAGTCGCAATCGCAGGCGCACTGACAGCAGCCAT
CA

BS10678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-PC 999 CG9133-RC 114..999 902..17 4405 99.8 Minus
CG9133-PB 999 CG9133-RB 114..999 902..17 4405 99.8 Minus
CG9133-PD 930 CG9133-RD 45..930 902..17 4405 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-RD 3109 CG9133-RD 1977..2863 902..16 4420 99.9 Minus
CG9133-RB 1536 CG9133-RB 404..1290 902..16 4420 99.9 Minus
CG9133-RC 3036 CG9133-RC 1904..2790 902..16 4420 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1254411..1255046 902..267 3165 99.8 Minus
3L 28110227 3L 1255486..1255740 270..16 1275 100 Minus
Blast to na_te.dros performed 2015-02-11 12:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3630..3710 497..418 114 61.7 Minus

BS10678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:47 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-PB 115..999 17..901 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:05 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-PD 46..930 17..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:20 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-RC 1905..2790 16..901 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:38:53 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-RC 1905..2790 16..901 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:38:53 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1255488..1255740 16..268 100   Minus
3L 1254412..1255044 269..901 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:20 Download gff for BS10678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1254412..1255044 269..901 99 -> Minus
arm_3L 1255488..1255740 16..268 100   Minus

BS10678.5prime Sequence

846 bp (809 high quality bases) assembled on 2006-04-19

> BS10678.5prime
GAAGTTATCAGTCGACATGGCCAAGAAGAGGGGAAGAAAGGGCAAGAAGG
GCAAGAAGCCAAAGGTCGACTGCAAGTTCAAGATCACCAATGAGATGCTC
AAGCCCATGAACGAGAATGTGGACGACTGTGATGGCTGCTGTCAGTGCGC
CTGCGATTGCGACTGCAGTCCGGAGTTGGCTCCCTGCTTCATCCAGCCGA
CCAAGCCGGATCCGGGTCCGGAGGCGTACGACGAGTTCGAGGCCTGCCTC
AATGGCAGCGGTCTGACCATACGCGTACTCAAGAACACCCACAAGGTGGA
GAGCGTGATGGATGGCAGCGAGACTGCGCCCAATCTGGGCGCAGGCGATG
ATCCCTGCTATCGCGATGACCCCAATGACTGCGAGCCCGCAAAGGAGTCC
TGCCTGCACGATATGCTCCAGCGCAGCTCCTTCGCTCGCAACCACATCAA
GCGCCGGACCGGCGGCCGCATCATCAACCACCCGAACATCCCCAAGGTGC
GAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGACCGACAACTAC
TACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCAA
GGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGC
CCGCGCACTGTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAG
CGGAAGGACATCATGGACACCATGAAGGGTGTCAATTTGGACACAAGGCG
CAAGGGTATCGAGGTTTGCTACAAGACCTGCGAGGAGACCGACAGCGACG
TGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGCACAAGAA

BS10678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-PC 999 CG9133-RC 1..830 17..846 4150 100 Plus
CG9133-PB 999 CG9133-RB 1..830 17..846 4150 100 Plus
CG9133-PD 930 CG9133-RD 32..761 117..846 3650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-RB 1536 CG9133-RB 289..1120 15..846 4160 100 Plus
CG9133-RC 3036 CG9133-RC 1789..2620 15..846 4160 100 Plus
CG9130-RA 3036 CG9130-RA 1789..2620 15..846 4160 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1254398..1255046 117..765 3245 100 Plus
3L 28110227 3L 1254223..1254324 15..116 510 100 Plus
3L 28110227 3L 1255486..1255570 762..846 425 100 Plus
Blast to na_te.dros performed 2015-02-12 01:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3630..3710 535..614 114 61.7 Plus

BS10678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:48 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-PB 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:07 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9133-PB 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:15 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9130-RA 1785..2620 9..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:42 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9130-RA 1785..2620 9..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:42 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1254219..1254324 9..116 97 -> Plus
3L 1254398..1255044 117..763 100 -> Plus
3L 1255488..1255570 764..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:15 Download gff for BS10678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1254219..1254324 9..116 97 -> Plus
arm_3L 1254398..1255044 117..763 100 -> Plus
arm_3L 1255488..1255570 764..846 100   Plus

BS10678.complete Sequence

1031 bp assembled on 2006-11-01

GenBank Submission: FJ636716

> BS10678.complete
GAAGTTATCAGTCGACATGGCCAAGAAGAGGGGAAGAAAGGGCAAGAAGG
GCAAGAAGCCAAAGGTCGACTGCAAGTTCAAGATCACCAATGAGATGCTC
AAGCCCATGAACGAGAATGTGGACGACTGTGATGGCTGCTGTCAGTGCGC
CTGCGATTGCGACTGCAGTCCGGAGTTGGCTCCCTGCTTCATCCAGCCGA
CCAAGCCGGATCCGGGTCCGGAGGCGTACGACGAGTTCGAGGCCTGCCTC
AATGGCAGCGGTCTGACCATACGCGTACTCAAGAACACCCACAAGGTGGA
GAGCGTGATGGATGGCAGCGAGACTGCGCCCAATCTGGGCGCAGGCGATG
ATCCCTGCTATCGCGATGACCCCAATGACTGCGAGCCCGCAAAGGAGTCC
TGCCTGCACGATATGCTCCAGCGCAGCTCCTTCGCTCGCAACCACATCAA
GCGCCGGACCGGCGGCCGCATCATCAACCACCCGAACATCCCCAAGGTGC
GAGCCAATATCAAGTACTCTGGGAACGATGCCTGCGAGACCGACAACTAC
TACGTGCCCTTCTCGAAGATCAAGGAGGCCTGCGACTTCCAGGAGGCCAA
GGTCGACTGCTACCGCCAGCGACTCTGCGGCGGATCCGATCCCATCGTGC
CCGCGCACTGTCCCGTCCAGAACCAGCGATCATGTTGCATGCAGGTCGAG
CGGAAGGACATCATGGACACCATGAAGGGTGTCAATTTGGACACAAGGCG
CAAGGGTATCGAGGTTTGCTACAAGACCTGCGAGGAGACCGACAGCGACG
TGTTCCTAGTAAAACTGGGAAGTAAGGCCAAGTCGCAGCACAAGAAGAAT
ACCATCGAGATCGAGCTGCGGACGCCCAAGCAGCCCGTAACCCTTCCGAT
CAGCAAGGTGACCACGGAGACCTATGTTTCCGAGGAGATGCTAACCGGTG
GCAAGAAGGGGAAGAAGGGCAAGAAGGGCAAGGGCAAGAAGGGCAAGGGC
AAGAAGAAGAAGTAGAAGCTTTCTAGACCAT

BS10678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-RB 999 CG9133-PB 1..999 17..1015 4995 100 Plus
CG9133-RC 999 CG9133-PC 1..999 17..1015 4995 100 Plus
CG9133-RD 930 CG9133-PD 32..930 117..1015 4495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-RB 1536 CG9133-RB 289..1290 15..1016 5010 100 Plus
CG9133-RC 3036 CG9133-RC 1789..2790 15..1016 5010 100 Plus
CG9130-RA 3036 CG9130-RA 1789..2790 15..1016 5010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1254398..1255046 117..765 3245 100 Plus
3L 28110227 3L 1255486..1255740 762..1016 1275 100 Plus
3L 28110227 3L 1254223..1254324 15..116 510 100 Plus
Blast to na_te.dros performed 2014-11-27 13:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3630..3710 535..614 114 61.7 Plus

BS10678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:48:02 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9133-RB 1..999 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:36:03 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9133-RB 285..1290 9..1016 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:14 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9130-RA 1791..2789 17..1015 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:48:03 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9130-RA 1785..2790 9..1016 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:48 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
CG9130-RA 1791..2789 17..1015 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:48 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1254225..1254324 17..116 100 -> Plus
3L 1254398..1255044 117..763 100 -> Plus
3L 1255488..1255739 764..1015 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:14 Download gff for BS10678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1254225..1254324 17..116 100 -> Plus
arm_3L 1254398..1255044 117..763 100 -> Plus
arm_3L 1255488..1255739 764..1015 100   Plus

BS10678.pep Sequence

Translation from 16 to 1014

> BS10678.pep
MAKKRGRKGKKGKKPKVDCKFKITNEMLKPMNENVDDCDGCCQCACDCDC
SPELAPCFIQPTKPDPGPEAYDEFEACLNGSGLTIRVLKNTHKVESVMDG
SETAPNLGAGDDPCYRDDPNDCEPAKESCLHDMLQRSSFARNHIKRRTGG
RIINHPNIPKVRANIKYSGNDACETDNYYVPFSKIKEACDFQEAKVDCYR
QRLCGGSDPIVPAHCPVQNQRSCCMQVERKDIMDTMKGVNLDTRRKGIEV
CYKTCEETDSDVFLVKLGSKAKSQHKKNTIEIELRTPKQPVTLPISKVTT
ETYVSEEMLTGGKKGKKGKKGKGKKGKGKKKK*

BS10678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9133-PB 332 CG9133-PB 1..332 1..332 1819 100 Plus
CG9133-PC 332 CG9133-PC 1..332 1..332 1819 100 Plus
CG9133-PD 309 CG9133-PD 8..309 31..332 1640 98.7 Plus