Clone BS10681 Report

Search the DGRC for BS10681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptamon-RA
Protein status:BS10681.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10681.3prime Sequence

868 bp (845 high quality bases) assembled on 2006-04-19

> BS10681.3prime
ATGGTCTAGAAAGCTTCTACTTCATCTTCTTGTCCTCGTGCGCCTTCTTC
ACAATGGCCAGCTTGGAGTGCGGCGACGAGGGGTGCAGGGTGCGATAGGG
CGCCTCCTTGGTGCCATGCAGGACCAAGGACCATTCCAGCAGATTGCCGT
GTCGTGTTTGGGGCGAGTTGAAGCGAGCCTCCAATTTCCAGGTCCCCTGC
GGATACTCGCCCCACGAGTGAGTGGTCATAAAGGGCCATTTGGTGAAGCC
ATCGCGGTGGTCATCATCGTTGGCGCGCCTCGACAGGATCATGGATTTTG
TGCCCATTGGCGATGTAAGGAAAAGTTCAAGATCCCCGCGTCGTGAGGCA
TTTGCCGAGATCACCGCCTGCACGTGTTCCAAATAGTTGACCTCCGTGTC
GGTGCCCTTGCAAGCATCGGTTTTGATCTCCCAGAAGAGCGAACGACCCA
TAACAATGGCCTGTGGCTGGGTAAGCTCGCCCGCCTCGCAATGATAGCGC
GGTGGCACTGAATGCCACTGCTTGGATAGTGTGACCATGGCGCCGGCGTC
CAGCACTCCGAACCCGAATAGGTGGTTGAACTCCAGGCCCACGCCGTTCA
TTGTCCAGTGGAATCGGTTCTTGGCATCGAACAGCGAGTTGCGCTTCGAT
GTCAGCACCGTCAGATGCTGTATGTCCCGCCAAGTCAGCTGAGGATTGGC
CTCCAAGGCCAGGGCAAAGACGCCCGCTGCTTCGGGCGCCGCCGCACTGG
TGCCCGAGTGGGTGGTCGTGCACTTGCCATAGAGGTCCGTGGTGGCAACG
CCCGTGTTGGGGTCCTTGGCTCCGTTGCTGAATGTGGACGCCAGCGTGGA
GCTGCAGCTCTCGTCGTA

BS10681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6438-PA 1965 amon-RA 1114..1965 868..17 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 1550..2401 868..17 4260 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26699947..26700181 461..695 1175 100 Plus
3R 32079331 3R 26700427..26700599 696..868 865 100 Plus
3R 32079331 3R 26699715..26699879 297..461 825 100 Plus
3R 32079331 3R 26699287..26699450 17..180 820 100 Plus
3R 32079331 3R 26699502..26699620 178..296 595 100 Plus
Blast to na_te.dros performed on 2015-02-01 10:51:59 has no hits.

BS10681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:52 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-PA 1115..1965 17..867 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:11 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6438-PA 1115..1965 17..867 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:32:14 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1551..2404 13..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:07:56 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1551..2404 13..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:07:56 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26699284..26699448 13..178 98 <- Plus
3R 26699503..26699620 179..296 100 <- Plus
3R 26699715..26699879 297..461 100 <- Plus
3R 26699948..26700181 462..695 100 <- Plus
3R 26700427..26700598 696..867 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:32:14 Download gff for BS10681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22525006..22525170 13..178 98 <- Plus
arm_3R 22525225..22525342 179..296 100 <- Plus
arm_3R 22525437..22525601 297..461 100 <- Plus
arm_3R 22525670..22525903 462..695 100 <- Plus
arm_3R 22526149..22526320 696..867 100   Plus

BS10681.5prime Sequence

928 bp (808 high quality bases) assembled on 2006-04-19

> BS10681.5prime
GAAGTTATCAGTCGACATGGCAGCAGCCACATGGAGCTGGCTGTTGGCCC
CATTCCTGCTCCTCCACTGGGCCAGTGCAGGAGCGGGCGGAGGAGCAGGC
GGCTCGGGAGCGGGACTGAGCGGCCCCGCCGTCTTTACCAGCTCCTTCCT
GGTGCGCTTCCGGCGCGGAGTGGACAACTCGTTTGCCCATGATGTGGCCG
ACAAGTACGGCTTCGACAACCTAGGCCCGCTGGTCGGCGCCGATGGACAC
GAGTATCATTTCAAGCACCGGACCCTTCCACATGCCCGCTCCAGGAGGAG
TCTGACGCACACACGGGCCCTCAAGAGCCATCCGGCGGTGCATACGGCCG
TGCAACAGCCGGGATTCAAGCGGGTTAAACGTGGCCTGCGGCCGGCGGTG
CCCGCCATTCACGGCATGAAGTTCGACCTGAAAGTTGGCGAGGGCAATCG
GATTGACGAGGAGCCCACTGACCCCTACTTTCCCATGCAATGGTACCTCA
AGAACACGGGTCAGAATGGCGGCAAAGTCAGGCTGGATCTGAATGTGCAG
GCTGCCTGGGCCCAGGGAATCACCGGGAAGAATGTTACGACGGCCATCAT
GGATGATGGCGTGGACTACATGCATCCGGATCTGAAATTCAATTATAACG
CCGAGGCCAGTTATGACTTCAGCAGTAACGATCCCTTTCCGTATCCCCGA
TACACCGACGACTGGTTCAACAGCCATGGAACTCGTTGTGCCGGCGAAGT
GGCTGCTGCCAGAGATAATGGAATTTGCGGCGTTGGCGTTGCTTATGACA
GCAAAATCGCAGGCATTCGCATGCTGGATCAGCCGTACATGACGGACCTA
ATCGAGGGCAACTCCATGGGGCACGAGCCGCACAAAATCACATATACAGC
GCCTCCTGGGGTCCCACCGATGATGGCA

BS10681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6438-PA 1965 amon-RA 1..873 17..889 4315 99.7 Plus
CG6438-PA 1965 amon-RA 874..913 889..928 200 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 436..1349 16..928 4515 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26702601..26702873 609..337 1365 100 Minus
3R 32079331 3R 26713511..26713724 229..16 1070 100 Minus
3R 32079331 3R 26703712..26703823 340..229 560 100 Minus
3R 32079331 3R 26700871..26700990 928..810 520 97.5 Minus
3R 32079331 3R 26701515..26701607 813..721 465 100 Minus
3R 32079331 3R 26701948..26702024 723..647 385 100 Minus
3R 32079331 3R 26702474..26702512 646..608 195 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:59:23 has no hits.

BS10681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:53 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:12 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6438-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:04:50 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..1348 12..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:34 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..1348 12..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:34 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26713511..26713726 12..229 99   Minus
3R 26703715..26703822 230..337 100 <- Minus
3R 26700872..26700987 813..927 97 <- Minus
3R 26701516..26701604 724..812 100 <- Minus
3R 26701948..26702024 647..723 100 <- Minus
3R 26702474..26702511 609..646 100 <- Minus
3R 26702602..26702872 338..608 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:04:50 Download gff for BS10681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22529437..22529544 230..337 100 <- Minus
arm_3R 22526594..22526709 813..927 97 <- Minus
arm_3R 22527238..22527326 724..812 100 <- Minus
arm_3R 22527670..22527746 647..723 100 <- Minus
arm_3R 22528196..22528233 609..646 100 <- Minus
arm_3R 22528324..22528594 338..608 100 <- Minus
arm_3R 22539233..22539448 12..229 99   Minus

BS10681.complete Sequence

1997 bp assembled on 2007-11-30

GenBank Submission: FJ636717

> BS10681.complete
GAAGTTATCAGTCGACATGGCAGCAGCCACATGGAGCTGGCTGTTGGCCC
CATTCCTGCTCCTCCACTGGGCCAGTGCAGGAGCGGGCGGAGGAGCAGGC
GGCTCGGGAGCGGGACTGAGCGGCCCCGCCGTCTTTACCAGCTCCTTCCT
GGTGCGCTTCCGGCGCGGAGTGGACAACTCGTTTGCCCATGATGTGGCCG
ACAAGTACGGCTTCGACAACCTAGGCCCGCTGGTCGGCGCCGATGGACAC
GAGTATCATTTCAAGCACCGGACCCTTCCACATGCCCGCTCCAGGAGGAG
TCTGACGCACACACGGGCCCTCAAGAGCCATCCGGCGGTGCATACGGCCG
TGCAACAGCCGGGATTCAAGCGGGTTAAACGTGGCCTGCGGCCGGCGGTG
CCCGCCATTCACGGCATGAAGTTCGACCTGAAAGTTGGCGAGGGCAATCG
GATTGACGAGGAGCCCACTGACCCCTACTTTCCCATGCAATGGTACCTCA
AGAACACGGGTCAGAATGGCGGCAAAGTCAGGCTGGATCTGAATGTGCAG
GCTGCCTGGGCCCAGGGAATCACCGGGAAGAATGTTACGACGGCCATCAT
GGATGATGGCGTGGACTACATGCATCCGGATCTGAAATTCAATTATAACG
CCGAGGCCAGTTATGACTTCAGCAGTAACGATCCCTTTCCGTATCCCCGA
TACACCGACGACTGGTTCAACAGCCATGGAACTCGTTGTGCCGGCGAAGT
GGCTGCTGCCAGAGATAATGGAATTTGCGGCGTTGGCGTTGCTTATGACA
GCAAAATCGCAGGCATTCGCATGCTGGATCAGCCGTACATGACGGACCTA
ATCGAGGCCAACTCCATGGGCCACGAGCCGCACAAAATCCACATATACAG
CGCCTCCTGGGGTCCCACCGATGATGGCAAGACCGTGGACGGTCCCCGGA
ATGCCACCATGCGAGCGATAGTCCAGGGCGTCAATGAGGGTCGAAATGGC
CTGGGCAACATCTATGTTTGGGCATCCGGCGACGGCGGCGAGGAGGATGA
CTGCAATTGTGACGGCTACGCCGCCTCCATGTGGACCATTTCCATTAACA
GTGCCATTAACGACGGCCAGAACGCCCACTACGACGAGAGCTGCAGCTCC
ACGCTGGCGTCCACATTCAGCAACGGAGCCAAGGACCCCAACACGGGCGT
TGCCACCACGGACCTCTATGGCAAGTGCACGACCACCCACTCGGGCACCA
GTGCGGCGGCGCCCGAAGCAGCGGGCGTCTTTGCCCTGGCCTTGGAGGCC
AATCCTCAGCTGACTTGGCGGGACATACAGCATCTGACGGTGCTGACATC
GAAGCGCAACTCGCTGTTCGATGCCAAGAACCGATTCCACTGGACAATGA
ACGGCGTGGGCCTGGAGTTCAACCACCTATTCGGGTTCGGAGTGCTGGAC
GCCGGCGCCATGGTCACACTATCCAAGCAGTGGCATTCAGTGCCACCGCG
CTATCATTGCGAGGCGGGCGAGCTTACCCAGCCACAGGCCATTGTTATGG
GTCGTTCGCTCTTCTGGGAGATCAAAACCGATGCTTGCAAGGGCACCGAC
ACGGAGGTCAACTATTTGGAACACGTGCAGGCGGTGATCTCGGCAAATGC
CTCACGACGCGGGGATCTTGAACTTTTCCTTACATCGCCAATGGGCACAA
AATCCATGATCCTGTCGAGGCGCGCCAACGATGATGACCACCGCGATGGC
TTCACCAAATGGCCCTTTATGACCACTCACTCGTGGGGCGAGTATCCGCA
GGGGACCTGGAAATTGGAGGCTCGCTTCAACTCGCCCCAAACACGACACG
GCAATCTGCTGGAATGGTCCTTGGTCCTGCATGGCACCAAGGAGGCGCCC
TATCGCACCCTGCACCCCTCGTCGCCGCACTCCAAGCTGGCCATTGTGAA
GAAGGCGCACGAGGACAAGAAGATGAAGTAGAAGCTTTCTAGACCAT

BS10681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 1965 CG6438-PA 1..1965 17..1981 9825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
amon-RA 3991 CG6438-RA 436..2401 16..1981 9830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26700427..26700742 1302..987 1580 100 Minus
3R 32079331 3R 26702601..26702873 609..337 1365 100 Minus
3R 32079331 3R 26699947..26700181 1537..1303 1175 100 Minus
3R 32079331 3R 26713511..26713724 229..16 1070 100 Minus
3R 32079331 3R 26700811..26700990 989..810 900 100 Minus
3R 32079331 3R 26699715..26699879 1701..1537 825 100 Minus
3R 32079331 3R 26699287..26699450 1981..1818 820 100 Minus
3R 32079331 3R 26699502..26699620 1820..1702 595 100 Minus
3R 32079331 3R 26703712..26703823 340..229 560 100 Minus
3R 32079331 3R 26701515..26701607 813..721 465 100 Minus
3R 32079331 3R 26701948..26702024 723..647 385 100 Minus
3R 32079331 3R 26702474..26702512 646..608 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:57:24 has no hits.

BS10681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:20 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 1..1965 17..1981 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:06 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 434..2404 12..1985 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:22:49 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2401 17..1981 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:55 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2401 17..1981 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:04 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
amon-RA 437..2401 17..1981 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:04 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26699287..26699448 1820..1981 100 <- Minus
3R 26699503..26699620 1702..1819 100 <- Minus
3R 26699715..26699879 1537..1701 100 <- Minus
3R 26699948..26700181 1303..1536 100 <- Minus
3R 26700427..26700740 989..1302 100 <- Minus
3R 26700812..26700987 813..988 100 <- Minus
3R 26701516..26701604 724..812 100 <- Minus
3R 26701948..26702024 647..723 100 <- Minus
3R 26702474..26702511 609..646 100 <- Minus
3R 26702602..26702872 338..608 100 <- Minus
3R 26703715..26703822 230..337 100 <- Minus
3R 26713511..26713723 17..229 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:22:49 Download gff for BS10681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22539233..22539445 17..229 100   Minus
arm_3R 22528196..22528233 609..646 100 <- Minus
arm_3R 22528324..22528594 338..608 100 <- Minus
arm_3R 22529437..22529544 230..337 100 <- Minus
arm_3R 22525009..22525170 1820..1981 100 <- Minus
arm_3R 22525225..22525342 1702..1819 100 <- Minus
arm_3R 22525437..22525601 1537..1701 100 <- Minus
arm_3R 22525670..22525903 1303..1536 100 <- Minus
arm_3R 22526149..22526462 989..1302 100 <- Minus
arm_3R 22526534..22526709 813..988 100 <- Minus
arm_3R 22527238..22527326 724..812 100 <- Minus
arm_3R 22527670..22527746 647..723 100 <- Minus

BS10681.pep Sequence

Translation from 16 to 1980

> BS10681.pep
MAAATWSWLLAPFLLLHWASAGAGGGAGGSGAGLSGPAVFTSSFLVRFRR
GVDNSFAHDVADKYGFDNLGPLVGADGHEYHFKHRTLPHARSRRSLTHTR
ALKSHPAVHTAVQQPGFKRVKRGLRPAVPAIHGMKFDLKVGEGNRIDEEP
TDPYFPMQWYLKNTGQNGGKVRLDLNVQAAWAQGITGKNVTTAIMDDGVD
YMHPDLKFNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVAAARD
NGICGVGVAYDSKIAGIRMLDQPYMTDLIEANSMGHEPHKIHIYSASWGP
TDDGKTVDGPRNATMRAIVQGVNEGRNGLGNIYVWASGDGGEEDDCNCDG
YAASMWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDL
YGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSL
FDAKNRFHWTMNGVGLEFNHLFGFGVLDAGAMVTLSKQWHSVPPRYHCEA
GELTQPQAIVMGRSLFWEIKTDACKGTDTEVNYLEHVQAVISANASRRGD
LELFLTSPMGTKSMILSRRANDDDHRDGFTKWPFMTTHSWGEYPQGTWKL
EARFNSPQTRHGNLLEWSLVLHGTKEAPYRTLHPSSPHSKLAIVKKAHED
KKMK*

BS10681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
amon-PA 654 CG6438-PA 1..654 1..654 3552 100 Plus
Fur1-PB 1269 CG10772-PB 215..801 22..639 1243 42.9 Plus
Fur1-PH 864 CG10772-PH 215..789 22..625 1217 42.6 Plus
Fur1-PI 892 CG10772-PI 215..789 22..625 1217 42.6 Plus
Fur1-PC 892 CG10772-PC 215..789 22..625 1217 42.6 Plus