Clone Sequence Records
BS10682.3prime Sequence
908 bp (827 high quality bases) assembled on 2006-04-19
> BS10682.3prime
ATGGTCTAGAAAGCTTTTATTTGATGGCGGCAATGAGCGGGCTTTCTTCG
CGAGTCTTAATGTAGGGCATCCGCGGCCAAACCCAGGAAGCGGGCATCGA
GCTCTCGTAGTTGAAGTTGTACAGCTGATTCTCCAGCCACTTGCGCTTGT
CCTGTGGCTCAGGGTAGGTAGATGCCAAGCCTCTATCGTAGGCACATTTG
GTCACGCCAACGGCAATGTTCATGGACACGTTGCGGATGCTCGACAGCGG
AGGATACAGCGATCCGCGCTCAATATCGCTGGGCTCCACGAAGTTGGCCA
ACTCCTGGGCGGCGATGAGGAACATTTCGTCGGGTATGTGGTGAGTACCC
GTGCAGATCACGCCCAAGCCAACGCCTGGGAAGATGTAGGCATTGTTGCC
CTGGCCCGGGTAGAAGGTCTTGTCACCGATCTGGACCGGTGGGAAGGGAG
AGCCCGACGAGAAGATCACGCGAGCATCCGTGTGCTTGTAAGCATCTTCG
GCAGTGCATTCTGCCTTGCTGGTGGGATTGGACAAGGCGAACACCACGGG
CCTCTCATTGTTATCCGCCATGGTGCGCAGGATTTCCGGTGTGAAAATGC
CGGCAGCAGCCGAGGCACCAATAAGCACACTGGGTTTGATGGTGGAGACA
ATCTCGGCGAGATCTGACATCGGATTGATGTCCTTGGCGTAGTGGATTTT
GTGGCCATCCAAGTTGCCCACCTTGCGGCTCTTGGTCAGCAGACCATCGA
TATCGACCATGTAAATTCTGTTGTAGGCCTCCTCGATGGGCACACCATCC
TGCACCATGGCCTTGACCGTGAGATCGGCGATGCCGATGGCGGCCTCACC
GGCTCCTGCAAACAGGAAGGTGTAGTCCTTGAAGGACTTACCCGTAATAC
GCTTGGAG
BS10682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5889-PA | 1854 | Mdh-RA | 963..1854 | 908..17 | 4460 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-RA | 3311 | CG5889-RA | 1191..2084 | 908..15 | 4470 | 100 | Minus |
| Men-b-RC | 2543 | CG5889-RC | 1191..2048 | 908..51 | 4290 | 100 | Minus |
| Men-b-RB | 2239 | CG5889-RB | 1191..2048 | 908..51 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27155778..27156073 | 475..180 | 1480 | 100 | Minus |
| 3R | 32079331 | 3R | 27155226..27155507 | 908..627 | 1410 | 100 | Minus |
| 3R | 32079331 | 3R | 27155566..27155719 | 628..475 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 27156139..27156270 | 182..51 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 27156340..27156376 | 51..15 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:10:11 has no hits.
BS10682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:54 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-PA | 963..1854 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:14 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5889-PA | 963..1854 | 17..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:42:51 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 1191..2084 | 15..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:54:17 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 1191..2084 | 15..908 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:54:17 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27155226..27155505 | 629..908 | 100 | -> | Minus |
| 3R | 27155566..27155718 | 476..628 | 100 | -> | Minus |
| 3R | 27155778..27156072 | 181..475 | 100 | -> | Minus |
| 3R | 27156141..27156269 | 52..180 | 100 | -> | Minus |
| 3R | 27156340..27156376 | 15..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:42:51 Download gff for
BS10682.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22980948..22981227 | 629..908 | 100 | -> | Minus |
| arm_3R | 22981288..22981440 | 476..628 | 100 | -> | Minus |
| arm_3R | 22981500..22981794 | 181..475 | 100 | -> | Minus |
| arm_3R | 22981863..22981991 | 52..180 | 100 | -> | Minus |
| arm_3R | 22982062..22982098 | 15..51 | 100 | | Minus |
BS10682.5prime Sequence
823 bp (819 high quality bases) assembled on 2006-04-19
> BS10682.5prime
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCC
BS10682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5889-PA | 1854 | Mdh-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
| CG10120-PA | 2280 | Men-RA | 1009..1115 | 542..648 | 185 | 86.9 | Plus |
| CG10120-PB | 2292 | Men-RB | 1021..1127 | 542..648 | 185 | 86.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:37:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-RC | 2543 | CG5889-RC | 229..1035 | 17..823 | 4035 | 100 | Plus |
| Men-b-RB | 2239 | CG5889-RB | 229..1035 | 17..823 | 4035 | 100 | Plus |
| Men-b-RA | 3311 | CG5889-RA | 229..1035 | 17..823 | 4035 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27154454..27155070 | 207..823 | 3085 | 100 | Plus |
| 3R | 32079331 | 3R | 27154213..27154391 | 31..209 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 12714576..12714921 | 765..420 | 515 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:37:32 has no hits.
BS10682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:56 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:15 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5889-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:37:13 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 222..1035 | 9..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:11:18 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 222..1035 | 9..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:11:18 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27154216..27154390 | 34..208 | 100 | -> | Plus |
| 3R | 27154456..27155070 | 209..823 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:37:13 Download gff for
BS10682.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22979938..22980112 | 34..208 | 100 | -> | Plus |
| arm_3R | 22980178..22980792 | 209..823 | 100 | | Plus |
BS10682.complete Sequence
1886 bp assembled on 2007-11-30
GenBank Submission: FJ636718
> BS10682.complete
GAAGTTATCAGTCGACATGTTCTCACGACCCAGCTTATGTGGAACTGTGG
GCAAATTGTGTCGATGCGGCACTTCAGCAACAGGAAAGACTGCTGTGGCA
GCAGCAACAGTTCCCACCGCTCGACACTATCATGAGGTGGTGGGCGATAT
CATCTGCCCGTCTCAGGTGCGCGGCATAGATCACATCCGTGATCCGCGAC
TCAACAAGGGCCTTGCCTTTACACTGGAGGAGCGCCAGACTCTGGGCATC
CATGGGCTGCAGCCAGCGCGCTTCAAGACGCAAGAGGAGCAGCTGCAGCT
ATGCAAGATCGCCGTAAACCGCTACACGGAGCCGCTGAACAAGTATCTCT
ATCTGAGCGATCTGTACGATCGCAATGAGCGTCTGTTCTTCCGCTTCCTA
TCGGAGAACATCGAGGATCTGATGCCCATTGTGTACACGCCGACGGTGGG
CTTGGCCTGCCAGCGCTTTGGCCTGATCTACCGACGTCCTCATGGTCTGT
TCATCACCTACAACGATCGAGGACACATCTTTGATGTGATGAAGAACTGG
CCGGAGCCGAATGTGCGTGCCATCTGTGTGACGGATGGTGAGCGCATCCT
GGGACTGGGAGATTTGGGCGCCTGCGGCATGGGCATTCCCGTGGGCAAGC
TGGCCTTGTACACGGCTCTGGCCGGAATCAAGCCCCATCAGTGCCTGCCC
ATTGTGGTGGATGTGGGCACCAACAACATCGATCTGCTGGAGGATCCCCT
GTACGTGGGTCTGCGTCAGAAGCGAGTGGTTGGTCGGGAGTACGACGAGT
TCATTGACGAGTTTATGGAGGCCGTGGTGCAGCGCTATGGCCAGAACACT
CTGATCCAGTTTGAGGACTTTGGCAACCACAATGCATTTAGGTTCCTGGA
CAAATACCGCAACACCTATTGCACTTTCAACGACGACATCCAGGGAACCG
CCTCCGTGGCCGTTGCTGGGCTCTATGCCTCCAAGCGTATTACGGGTAAG
TCCTTCAAGGACTACACCTTCCTGTTTGCAGGAGCCGGTGAGGCCGCCAT
CGGCATCGCCGATCTCACGGTCAAGGCCATGGTGCAGGATGGTGTGCCCA
TCGAGGAGGCCTACAACAGAATTTACATGGTCGATATCGATGGTCTGCTG
ACCAAGAGCCGCAAGGTGGGCAACTTGGATGGCCACAAAATCCACTACGC
CAAGGACATCAATCCGATGTCAGATCTCGCCGAGATTGTCTCCACCATCA
AACCCAGTGTGCTTATTGGTGCCTCGGCTGCTGCCGGCATTTTCACACCG
GAAATCCTGCGCACCATGGCGGATAACAATGAGAGGCCCGTGGTGTTCGC
CTTGTCCAATCCCACCAGCAAGGCAGAATGCACTGCCGAAGATGCTTACA
AGCACACGGATGCTCGCGTGATCTTCTCGTCGGGCTCTCCCTTCCCACCG
GTCCAGATCGGTGACAAGACCTTCTACCCGGGCCAGGGCAACAATGCCTA
CATCTTCCCAGGCGTTGGCTTGGGCGTGATCTGCACGGGTACTCACCACA
TACCCGACGAAATGTTCCTCATCGCCGCCCAGGAGTTGGCCAACTTCGTG
GAGCCCAGCGATATTGAGCGCGGATCGCTGTATCCTCCGCTGTCGAGCAT
CCGCAACGTGTCCATGAACATTGCCGTTGGCGTGACCAAATGTGCCTACG
ATAGAGGCTTGGCATCTACCTACCCTGAGCCACAGGACAAGCGCAAGTGG
CTGGAGAATCAGCTGTACAACTTCAACTACGAGAGCTCGATGCCCGCTTC
CTGGGTTTGGCCGCGGATGCCCTACATTAAGACTCGCGAAGAAAGCCCGC
TCATTGCCGCCATCAAATAAAAGCTTTCTAGACCAT
BS10682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-RA | 1854 | CG5889-PA | 1..1854 | 17..1870 | 9270 | 100 | Plus |
| Men-b-RC | 1875 | CG5889-PC | 1..1820 | 17..1836 | 9100 | 100 | Plus |
| Men-b-RB | 1866 | CG5889-PB | 1..1820 | 17..1836 | 9100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-RA | 3311 | CG5889-RA | 229..2084 | 17..1872 | 9280 | 100 | Plus |
| Men-b-RC | 2543 | CG5889-RC | 229..2048 | 17..1836 | 9100 | 100 | Plus |
| Men-b-RB | 2239 | CG5889-RB | 229..2048 | 17..1836 | 9100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27154454..27155507 | 207..1260 | 5270 | 100 | Plus |
| 3R | 32079331 | 3R | 27155778..27156073 | 1412..1707 | 1480 | 100 | Plus |
| 3R | 32079331 | 3R | 27154213..27154391 | 31..209 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 27155566..27155719 | 1259..1412 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 27156139..27156270 | 1705..1836 | 660 | 100 | Plus |
| 3R | 32079331 | 3R | 12714372..12714921 | 969..420 | 650 | 74.5 | Minus |
| 3R | 32079331 | 3R | 27156340..27156376 | 1836..1872 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:40:13 has no hits.
BS10682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:22 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-RA | 1..1854 | 17..1870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:08 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-RA | 243..2105 | 9..1872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:54 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 234..2080 | 22..1868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:32:49 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mdh-RA | 255..2101 | 22..1868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:58 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Men-b-RA | 234..2080 | 22..1868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:58 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27154213..27154390 | 31..208 | 100 | -> | Plus |
| 3R | 27154456..27155505 | 209..1258 | 100 | -> | Plus |
| 3R | 27155566..27155718 | 1259..1411 | 100 | -> | Plus |
| 3R | 27155778..27156072 | 1412..1706 | 100 | -> | Plus |
| 3R | 27156141..27156269 | 1707..1835 | 100 | -> | Plus |
| 3R | 27156340..27156372 | 1836..1868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:54 Download gff for
BS10682.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22979935..22980112 | 31..208 | 100 | -> | Plus |
| arm_3R | 22980178..22981227 | 209..1258 | 100 | -> | Plus |
| arm_3R | 22981288..22981440 | 1259..1411 | 100 | -> | Plus |
| arm_3R | 22981500..22981794 | 1412..1706 | 100 | -> | Plus |
| arm_3R | 22981863..22981991 | 1707..1835 | 100 | -> | Plus |
| arm_3R | 22982062..22982094 | 1836..1868 | 100 | | Plus |
BS10682.pep Sequence
Translation from 16 to 1869
> BS10682.pep
MFSRPSLCGTVGKLCRCGTSATGKTAVAAATVPTARHYHEVVGDIICPSQ
VRGIDHIRDPRLNKGLAFTLEERQTLGIHGLQPARFKTQEEQLQLCKIAV
NRYTEPLNKYLYLSDLYDRNERLFFRFLSENIEDLMPIVYTPTVGLACQR
FGLIYRRPHGLFITYNDRGHIFDVMKNWPEPNVRAICVTDGERILGLGDL
GACGMGIPVGKLALYTALAGIKPHQCLPIVVDVGTNNIDLLEDPLYVGLR
QKRVVGREYDEFIDEFMEAVVQRYGQNTLIQFEDFGNHNAFRFLDKYRNT
YCTFNDDIQGTASVAVAGLYASKRITGKSFKDYTFLFAGAGEAAIGIADL
TVKAMVQDGVPIEEAYNRIYMVDIDGLLTKSRKVGNLDGHKIHYAKDINP
MSDLAEIVSTIKPSVLIGASAAAGIFTPEILRTMADNNERPVVFALSNPT
SKAECTAEDAYKHTDARVIFSSGSPFPPVQIGDKTFYPGQGNNAYIFPGV
GLGVICTGTHHIPDEMFLIAAQELANFVEPSDIERGSLYPPLSSIRNVSM
NIAVGVTKCAYDRGLASTYPEPQDKRKWLENQLYNFNYESSMPASWVWPR
MPYIKTREESPLIAAIK*
BS10682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Men-b-PA | 617 | CG5889-PA | 1..617 | 1..617 | 3253 | 100 | Plus |
| Men-b-PC | 624 | CG5889-PC | 1..611 | 1..611 | 3211 | 99.5 | Plus |
| Men-b-PB | 621 | CG5889-PB | 1..611 | 1..611 | 3211 | 99.5 | Plus |
| Men-PC | 578 | CG10120-PC | 25..576 | 39..596 | 1693 | 58.8 | Plus |
| Men-PA | 759 | CG10120-PA | 206..757 | 39..596 | 1693 | 58.8 | Plus |
