Clone BS10684 Report

Search the DGRC for BS10684

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG1358-RA
Protein status:BS10684.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10684.3prime Sequence

944 bp (844 high quality bases) assembled on 2006-04-19

> BS10684.3prime
ATGGTCTAGAAAGCTTCTATGGATTGCCAGCCTGTCCGCTGGCCGGCACC
TGGGCGTTCTGGCGCCTCAGATCCGACTGGGTGATGGCCGTGATAATGGT
GCCCACAATCAGCATCACGGCCATGGTTATGTTGGCGGCTATGTCGCCGA
ACGTGGTGAACAGCTCCGAGTAGAAGAGCGTAAAGCATATGCCGAAGGTT
TGCGCGGAGGCGTTCAGCAGTCCGGAGGAGGTGCCCTCCGGCTCCGGGAA
GGTCAGCTCGGCGCCGAACTCGAAGCCCACCGGCAGGTAACCAGTCATAA
AGAAGCCCAGCAGCGAGGCCGTCAGGTAGACCACCGCGATGTGCCCCGTG
TCCAAGGTGAAGGTGAAGATCCACATGCCCACCATGGACAGCGCGTAGAC
CGCCAGCGTCGTTTCCTTGAACTTGTGCGTCTTATCCAGCACAATGCCCG
ATACCACGGAGCCCAGCATCCCGGCTAGCACAATGCTGAGCCCAATACGT
CCGGCGTCCACCTCGTGGCCGGGATAATACTTCAGCACCACCGGATTGAG
GAGCGTGGAAATGGCGTAAAAGACGCCCACATTGATGCCGTACGAGAGGA
GCAGGAAGATGAAGTTCCGGTTGGTCATCAGGTTCTTCAGCGACTGCATG
AAGCTGACTTGCTCCGCTTCGGAACTTTCCAAGAGCTGGGCTGCCTCCTG
GGCGGCGGATGGCGGAGTGGGTGGTTTGTCCTGGAAAAATATCACCATCA
GGACGAGCAGGATAGAGGTGAGCCCGGCCACCAAATAGAACATCATCTGC
AGATCACTGCCCACCGTCTCGAGATCCGGTGAATTGGGCACCAGCATGGG
TGGCAGCACGAAGCCCACGGCCACGCCCAGCTGGTTGCCAAAGACTCCCA
CGCTGGTGGCCGAGGACACCTGGTCCGGAACGAACCATACCGCA

BS10684.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PC 1449 CG1358-RC 522..1449 944..17 4615 99.8 Minus
CG1358-PA 1449 CG1358-RA 522..1449 944..17 4615 99.8 Minus
CG1358-PB 1449 CG1358-RB 522..1449 944..17 4615 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 892..1819 944..17 4625 99.9 Minus
CG1358-RB 2485 CG1358-RB 753..1680 944..17 4625 99.9 Minus
CG1358-RA 3374 CG1358-RA 1642..2569 944..17 4625 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7596540..7596829 17..306 1450 100 Plus
2R 25286936 2R 7597467..7597665 540..738 995 100 Plus
2R 25286936 2R 7598216..7598360 739..883 725 100 Plus
2R 25286936 2R 7597264..7597390 416..542 635 100 Plus
2R 25286936 2R 7596950..7597060 306..416 555 100 Plus
2R 25286936 2R 7602432..7602495 881..944 305 98.4 Plus
Blast to na_te.dros performed 2015-02-11 11:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1011..1089 815..891 138 65.8 Plus

BS10684.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:46:59 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 523..1449 17..943 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:19 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 523..1449 17..943 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:57:49 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1631..2563 12..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:54:14 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1643..2575 12..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:54:14 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7596950..7597060 306..416 100 <- Plus
2R 7597265..7597389 417..541 100 <- Plus
2R 7597469..7597665 542..738 100 <- Plus
2R 7598216..7598357 739..880 100 <- Plus
2R 7602432..7602494 881..943 98   Plus
2R 7596534..7596828 12..305 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:57:49 Download gff for BS10684.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3484039..3484333 12..305 99 <- Plus
arm_2R 3484455..3484565 306..416 100 <- Plus
arm_2R 3484770..3484894 417..541 100 <- Plus
arm_2R 3484974..3485170 542..738 100 <- Plus
arm_2R 3485721..3485862 739..880 100 <- Plus
arm_2R 3489937..3489999 881..943 98   Plus

BS10684.5prime Sequence

952 bp (798 high quality bases) assembled on 2006-04-19

> BS10684.5prime
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CCTGATGACAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCAA
TGTGGGCGTCTTTTACGCCATTTCCACGCTCCTCAATCCGGTGGGTGCTG
AA

BS10684.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PC 1449 CG1358-RC 1..835 17..851 4175 100 Plus
CG1358-PA 1449 CG1358-RA 1..835 17..851 4175 100 Plus
CG1358-PB 1449 CG1358-RB 1..835 17..851 4175 100 Plus
CG1358-PC 1449 CG1358-RC 843..928 859..944 430 100 Plus
CG1358-PA 1449 CG1358-RA 843..928 859..944 430 100 Plus
CG1358-PB 1449 CG1358-RB 843..928 859..944 430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 371..1305 17..952 4610 99.7 Plus
CG1358-RB 2485 CG1358-RB 232..1166 17..952 4610 99.7 Plus
CG1358-RA 3374 CG1358-RA 1121..2055 17..952 4610 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7602432..7602657 601..376 1130 100 Minus
2R 25286936 2R 7597467..7597665 942..744 900 99 Minus
2R 25286936 2R 7605943..7606088 162..17 730 100 Minus
2R 25286936 2R 7598216..7598360 743..599 725 100 Minus
2R 25286936 2R 7603408..7603521 273..160 570 100 Minus
2R 25286936 2R 7603121..7603225 377..273 525 100 Minus
Blast to na_te.dros performed 2015-02-11 22:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1011..1089 667..591 138 65.8 Minus

BS10684.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:00 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 1..933 17..950 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:21 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-PB 1..933 17..950 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:19 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1103..2043 9..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:41 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1115..2055 9..952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:41 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7598216..7598357 602..743 100 <- Minus
2R 7602432..7602656 377..601 100 <- Minus
2R 7603122..7603224 274..376 100 <- Minus
2R 7603408..7603519 162..273 100 <- Minus
2R 7605944..7606094 9..161 97   Minus
2R 7597467..7597665 744..942 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:19 Download gff for BS10684.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3484972..3485170 744..942 99 <- Minus
arm_2R 3485721..3485862 602..743 100 <- Minus
arm_2R 3489937..3490161 377..601 100 <- Minus
arm_2R 3490627..3490729 274..376 100 <- Minus
arm_2R 3490913..3491024 162..273 100 <- Minus
arm_2R 3493449..3493599 9..161 97   Minus

BS10684.complete Sequence

1481 bp assembled on 2006-11-01

GenBank Submission: FJ636719

> BS10684.complete
GAAGTTATCAGTCGACATGGACCTGAAGCACAGTGCGGGTGGAGCTGGCG
AGAACAGCGAGACCTTCATTGCCACCAGCAAGTCCACAGACATGATCACG
CCCAAGGAGAAGGAGGGCAAGGGGCTGAAGGTGGCGGGTGGCCATAACCC
CCCAGCCGAAGGCTACAAAGTCTACGCCCGACGCTGGGCGGTGCTCATCC
TCTTTGTGTTCTACTCATCCTCGAATGCCATGCAGTGGATACAATACACC
ATCATCAACAACATAATAACCCGCTACTATGGCATCAGCGACAAGTGGGT
GGACTGGACGTCCATGATTTATATGATCCTGTACATACCGCTCATATTCC
CAGGCAGTTGGTTTTTGGATAAAGTGGGTCTTCGCATCACCGCTCTAGTT
GGAATCGTCGGCACTTGTGTGGGTGCCTGGATCAAGGTCTTCTCGGTGGA
CCCGTCGCTCTTCTACGTCAGCTTCATTGGCCAGTCGATCGTTGCCCTGG
CCCAAGTGTGCATCCTGTCGCTTCCCGCGCGCTTGGCTGCGGTATGGTTC
GGTCCGGACCAGGTGTCCTCGGCCACCAGCGTGGGAGTCTTTGGCAACCA
GCTGGGCGTGGCCGTGGGCTTCGTGCTGCCACCCATGCTGGTGCCCAATT
CACCGGATCTCGAGACGGTGGGCAGTGATCTGCAGATGATGTTCTATTTG
GTGGCCGGGCTCACCTCTATCCTGCTCGTCCTGATGGTGATATTTTTCCA
GGACAAACCACCCACTCCGCCATCCGCCGCCCAGGAGGCAGCCCAGCTCT
TGGAAAGTTCCGAAGCGGAGCAAGTCAGCTTCATGCAGTCGCTGAAGAAC
CTGATGACCAACCGGAACTTCATCTTCCTGCTCCTCTCGTACGGCATCAA
TGTGGGCGTCTTTTACGCCATTTCCACGCTCCTCAATCCGGTGGTGCTGA
AGTATTATCCCGGCCACGAGGTGGACGCCGGACGTATTGGGCTCAGCATT
GTGCTAGCCGGGATGCTGGGCTCCGTGGTATCGGGCATTGTGCTGGATAA
GACGCACAAGTTCAAGGAAACGACGCTGGCGGTCTACGCGCTGTCCATGG
TGGGCATGTGGATCTTCACCTTCACCTTGGACACGGGGCACATCGCGGTG
GTCTACCTGACGGCCTCGCTGCTGGGCTTCTTTATGACTGGTTACCTGCC
GGTGGGCTTCGAGTTCGGCGCCGAGCTGACCTTCCCGGAGCCGGAGGGCA
CCTCCTCCGGACTGCTGAACGCCTCCGCGCAAACCTTCGGCATATGCTTT
ACGCTCTTCTACTCGGAGCTGTTCACCACGTTCGGCGACATAGCCGCCAA
CATAACCATGGCCGTGATGCTGATTGTGGGCACCATTATCACGGCCATCA
CCCAGTCGGATCTGAGGCGCCAGAACGCCCAGGTGCCGGCCAGCGGACAG
GCTGGCAATCCATAGAAGCTTTCTAGACCAT

BS10684.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 1449 CG1358-PD 1..1449 17..1465 7245 100 Plus
CG1358-RB 1449 CG1358-PB 1..1449 17..1465 7245 100 Plus
CG1358-RA 1449 CG1358-PA 1..1449 17..1465 7245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-RD 3094 CG1358-RD 371..1819 17..1465 7245 100 Plus
CG1358-RB 2485 CG1358-RB 232..1680 17..1465 7245 100 Plus
CG1358-RA 3374 CG1358-RA 1121..2569 17..1465 7245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7596540..7596829 1465..1176 1450 100 Minus
2R 25286936 2R 7602432..7602657 601..376 1130 100 Minus
2R 25286936 2R 7597467..7597665 942..744 995 100 Minus
2R 25286936 2R 7605943..7606088 162..17 730 100 Minus
2R 25286936 2R 7598216..7598360 743..599 725 100 Minus
2R 25286936 2R 7597264..7597390 1066..940 635 100 Minus
2R 25286936 2R 7603408..7603521 273..160 570 100 Minus
2R 25286936 2R 7596950..7597060 1176..1066 555 100 Minus
2R 25286936 2R 7603121..7603225 377..273 525 100 Minus
Blast to na_te.dros performed 2014-11-27 15:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1011..1089 667..591 138 65.8 Minus

BS10684.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:14 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 1..1449 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:50 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 221..1681 9..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:41:18 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1109..2557 17..1465 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:14 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RB 221..1681 9..1470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:05 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
CG1358-RA 1121..2569 17..1465 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:05 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7605944..7606088 17..161 100   Minus
2R 7597469..7597665 744..940 100 <- Minus
2R 7598216..7598357 602..743 100 <- Minus
2R 7602432..7602656 377..601 100 <- Minus
2R 7603122..7603224 274..376 100 <- Minus
2R 7603408..7603519 162..273 100 <- Minus
2R 7596540..7596828 1177..1465 100 <- Minus
2R 7596950..7597060 1066..1176 100 <- Minus
2R 7597265..7597389 941..1065 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:41:18 Download gff for BS10684.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3484045..3484333 1177..1465 100 <- Minus
arm_2R 3484455..3484565 1066..1176 100 <- Minus
arm_2R 3484770..3484894 941..1065 100 <- Minus
arm_2R 3484974..3485170 744..940 100 <- Minus
arm_2R 3485721..3485862 602..743 100 <- Minus
arm_2R 3489937..3490161 377..601 100 <- Minus
arm_2R 3490627..3490729 274..376 100 <- Minus
arm_2R 3490913..3491024 162..273 100 <- Minus
arm_2R 3493449..3493593 17..161 100   Minus

BS10684.pep Sequence

Translation from 16 to 1464

> BS10684.pep
MDLKHSAGGAGENSETFIATSKSTDMITPKEKEGKGLKVAGGHNPPAEGY
KVYARRWAVLILFVFYSSSNAMQWIQYTIINNIITRYYGISDKWVDWTSM
IYMILYIPLIFPGSWFLDKVGLRITALVGIVGTCVGAWIKVFSVDPSLFY
VSFIGQSIVALAQVCILSLPARLAAVWFGPDQVSSATSVGVFGNQLGVAV
GFVLPPMLVPNSPDLETVGSDLQMMFYLVAGLTSILLVLMVIFFQDKPPT
PPSAAQEAAQLLESSEAEQVSFMQSLKNLMTNRNFIFLLLSYGINVGVFY
AISTLLNPVVLKYYPGHEVDAGRIGLSIVLAGMLGSVVSGIVLDKTHKFK
ETTLAVYALSMVGMWIFTFTLDTGHIAVVYLTASLLGFFMTGYLPVGFEF
GAELTFPEPEGTSSGLLNASAQTFGICFTLFYSELFTTFGDIAANITMAV
MLIVGTIITAITQSDLRRQNAQVPASGQAGNP*

BS10684.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1358-PD 482 CG1358-PD 1..482 1..482 2461 100 Plus
CG1358-PB 482 CG1358-PB 1..482 1..482 2461 100 Plus
CG1358-PA 482 CG1358-PA 1..482 1..482 2461 100 Plus
CG1358-PC 482 CG1358-PC 1..482 1..482 2461 100 Plus