Clone Sequence Records
BS10686.3prime Sequence
781 bp (780 high quality bases) assembled on 2006-04-19
> BS10686.3prime
ATGGTCTAGAAAGCTTCTAATCCGCAATGGCCGTGTAGGGTAGACTGCTG
TGCTTCGGCTTCGTCTTGTTGATGAACACCTTGATGGCGCCATTGAAATC
GGCGCTGACCAACACATAACCACATCCCTTTTTGTGCTGCTCGACCAGTG
GATCCGGCTGATTGTGAGCCAACTTCTCATTGGAGATCTCATCCGGTTCG
GGCTTGATGATAGCCTCTGGGTGTGGCGCGAATATGGCACAAGTGACCGT
AGCATTGTGTGCTTTAATGCCTTCCCAAAAGTCGCTGCGATCGCGGCGAA
CAGAACTGAGTTTTGAGTAATCGTGGTTTGTTTTCCAAATATAGATGCAC
TGATTCTCGGACCCGGCTATGATGTACTTTCCATCGTGGCTGAACGAGCC
CTTAATTTGCGAGGACACATTCAAGTAGCCCTTGTACTTGCAGGACAAGT
TCAAGTCCCTCAAATCGTACAGGCGCACTCTGCTGTCGTTGGATGTGACT
AGAATCTTGTCTTCGCCGGGCATCGGTTCAATGCCACTGATCTTGCGGCC
AATGCGGTTTTTACCCCTGGTGGAGCGCACATGAATCTGCGTGTGGTATT
TCAGCTGATCCGTGTTATAAAATATGCAGCGACCATCGTAGCTCCCTACA
ACGGCGAACTGTCCATTTTGGCAGAAGTTGGCAGCCGTTATAAGCTTTGT
CTGGCCATCTACCTCATTCCACAGTGCCACCTTTTTGTCGGGTATGTTCC
ACAACCTTAGTTTGCCATCGAGGCTGCCACT
BS10686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-PA | 3339 | CG34133-RA | 2575..3339 | 781..17 | 3825 | 100 | Minus |
CG34133-PB | 3237 | CG34133-RB | 2473..3237 | 781..17 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-RC | 4263 | CG34133-RC | 2906..3670 | 781..17 | 3825 | 100 | Minus |
CG34133-RE | 4209 | CG34133-RE | 2852..3616 | 781..17 | 3825 | 100 | Minus |
CG34133-RB | 3831 | CG34133-RB | 2816..3580 | 781..17 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29873663..29874144 | 781..300 | 2410 | 100 | Minus |
3R | 32079331 | 3R | 29874409..29874566 | 174..17 | 790 | 100 | Minus |
3R | 32079331 | 3R | 29874205..29874346 | 301..160 | 665 | 97.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:11:20 has no hits.
BS10686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:03 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7814-PA | 1903..2667 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:25 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-PB | 2473..3237 | 17..781 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:29:00 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 2816..3588 | 5..781 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:08:21 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 2816..3588 | 5..781 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:08:21 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29873663..29874142 | 302..781 | 100 | -> | Minus |
3R | 29874205..29874333 | 173..301 | 100 | -> | Minus |
3R | 29874411..29874574 | 5..172 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:29:00 Download gff for
BS10686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25699385..25699864 | 302..781 | 100 | -> | Minus |
arm_3R | 25699927..25700055 | 173..301 | 100 | -> | Minus |
arm_3R | 25700133..25700296 | 5..172 | 97 | | Minus |
BS10686.5prime Sequence
837 bp (745 high quality bases) assembled on 2006-04-19
> BS10686.5prime
GAAGTTATCAGTCGACATGAGCACGCCCAGGGTGTCGCCCAAGCATCAGC
AGAGTGGTAAGGAAGTAGCCGCCACCACGACAGGGATTCCTAGTGCCGCA
TCCTCCGCGCAGAGCTCTGGTGTTGGCTCGATGGTTTTGCAGGAACCAGA
TGTGATAGCAAGCACAAAGCTTGCCCAGTCTAAAACTACTGATTCCATCA
CCTCGTCGGGACCCGTGGCGCCACCGCGAAGAAAGAAGAAGTCTCGTAAT
TGCTCCATCAGTTCCTCAGATCAGTATAGTCTTCCTCCTGCGGACAACGA
AGACACTGATAGTGATACGCGGTCTGTGAAGAGTGTGCAGGGTCTTCAGC
AAAAGCTGCGGGATGACTTTGTCATGGAGTTCGAGAGCTCTCTTAACAAT
GCAACTAGTTCAGCCTCCAATATCACCCTGACCTGCTCCTCCACCAATAC
AGTTGTTTCTGCATCGGCTTCGACTTCGGCAGCATCTTCGTCCTTGCCAT
CAACAATTGCAATTCATATGCGCCCCATGGTCGCTTCGGTCACCATTGCT
GGTCCAAAACTCACTCAATCTCTGGGCAGCAGTTCCACGTCGGTCCACTC
CAAGCCAAGTCCATCAAATTCAGCGAAAAGCAATTCCGCACCAGCGAGGG
TTAGTTCCATTGATCCGAATCAGGGTCTGAATCTGTTTAAGGCCATCCAG
GGAGGTTATGTGGTGAAACCACGCGACGAGGCCAGCAACAAGGCGCAAGG
CCCATCCCAAGATGAAATCGAGCGCATTGAGAAAATGCTGATGGAAAGCG
CGAACCGACCAAAGCTGGGCGGAACGGGGATCAACAG
BS10686.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-PA | 3339 | CG34133-RA | 673..1474 | 17..818 | 4010 | 100 | Plus |
CG34133-PB | 3237 | CG34133-RB | 571..1372 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-RC | 4263 | CG34133-RC | 1004..1815 | 17..828 | 4030 | 99.8 | Plus |
CG34133-RE | 4209 | CG34133-RE | 1004..1815 | 17..828 | 4030 | 99.8 | Plus |
CG34133-RB | 3831 | CG34133-RB | 914..1725 | 17..828 | 4030 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29871586..29872223 | 17..654 | 3190 | 100 | Plus |
3R | 32079331 | 3R | 29872281..29872457 | 652..828 | 855 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:38:28 has no hits.
BS10686.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:04 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7814-PA | 1..821 | 17..837 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:27 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-PB | 567..1391 | 13..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:03:44 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 910..1734 | 13..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:04 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 910..1734 | 13..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:04 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29871582..29872223 | 13..654 | 99 | -> | Plus |
3R | 29872284..29872466 | 655..837 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:03:44 Download gff for
BS10686.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25697304..25697945 | 13..654 | 99 | -> | Plus |
arm_3R | 25698006..25698188 | 655..837 | 97 | | Plus |
BS10686.complete Sequence
2699 bp assembled on 2007-11-30
> BS10686.complete
GAAGTTATCAGTCGACATGAGCACGCCCAGGGTGTCGCCCAAGCATCAGC
AGAGTGGTAAGGAAGTAGCCGCCACCACGACAGGGATTCCTAGTGCCGCA
TCCTCCGCGCAGAGCTCTGGTGTTGGCTCGATGGTTTTGCAGGAACCAGA
TGTGATAGCAAGCACAAAGCTTGCCCAGTCTAAAACTACTGATTCCATCA
CCTCGTCGGGACCCGTGGCGCCACCGCGAAGAAAGAAGAAGTCTCGTAAT
TGCTCCATCAGTTCCTCAGATCAGTATAGTCTTCCTCCTGCGGACAACGA
AGACACTGATAGTGATACGCGGTCTGTGAAGAGTGTGCAGGGTCTTCAGC
AAAAGCTGCGGGATGACTTTGTCATGGAGTTCGAGAGCTCTCTTAACAAT
GCAACTAGTTCAGCCTCCAATATCACCCTGACCTGCTCCTCCACCAATAC
AGTTGTTTCTGCATCGGCTTCGACTTCGGCAGCATCTTCGTCCTTGCCAT
CAACAATTGCAATTCATATGCGCCCCATGGTCGCTTCGGTCACCATTGCT
GGTCCAAAACTCACTCAATCTCTGGGCAGCAGTTCCACGTCGGTCCACTC
CAAGCCAAGTCCATCAAATTCAGCGAAAAGCAATTCCGCACCAGCGAGGG
TTAGTTCCATTGATCCGAATCAGGGTCTGAATCTGTTTAAGGCCATCCAG
GGAGGTTATGTGGTGAAACCACGCGACGAGGCCAGCAACAAGGCGCAAGG
CCCATCCCAAGATGAAATCGAGCGCATTGAGAAAATGCTGATGGAAAGCG
CGAACCGACCAAAGCTGGCGGGAACGGGATCCAACAGTTTAGGAAGCTCT
ACACGCTATCCCGGATTTTATCGCGGTGTTAACGATAAGGAGCGCCGGAA
GTCCGCTGGCGACGAAGATGTGCTCAAACAGATGAACATTTATGTGCGCA
CGCGAACCAGCTCAGGCAAGCAGCTAACCGACTTTGAGATCCTTGAACAA
GTTCCTGTTAAAAATTTAGACACGGGAGAAAATATGCCTCTATCCGAAAT
GCGTTCACCACCAGTGCCTGAGGGATGGAATCCGCTCTCGCTACACATCC
TTAAGCTGACCTCCCACCTGGAGGTGATCCAGAAGGAGTCCGACGAGGAG
AGTGTGATTGGCATACCGCCTAGCATCGAGGGTCAGCAGCCCGACGAAGA
AGAACTGGAAACGGAAGATGGCAGTCGACTGAAAAAGAAAACGGCCCGGA
TCAAGAGGTTCTTTGGCAGCACAATGCGAAAGACGGTGGACAAGGCCAAG
TCGATTGCATCCGAAGTGTCGCATGCGCGACACAAAGAGGATGTGGCTGA
TATTGTTGATGCAATGAATCCCGAGCAAAATATCAAAATCAAGGCTTCCT
CGTCCAACAAGGGACCCTATGAGTTTACCAAACTGCAGCACGTCCAGGAT
TTGAGTGGCGAAGATACCAGTGCCGTGTGGTGCATGAAGTTCAGTTCCTG
CGGTCGACTCCTGGCCACTGCTGGACAGGACAAGGTGTTAAGGATTTGGG
TTCTTAAAGATGCCTATCCGTTTTTCCAGGACATGCGCAACAAATACAAT
GCTGACCAAAAATCCTCACCTACGCCCTCGCAAGAGTCACTCGTCTCGCA
GCATTCGGCTGAGGAAGCCATTGCCATGGCTACTGCCGCAGAGAAATGCA
CGGGCCCCTTCATGCCAAAGCCCTTCTGCACCTACAATGGACACACCTCC
GATTTACTGGACGTCAGCTGGTCAAAGAATTACTTCATACTGTCAAGCAG
CATGGACAAGACTGTGCGGCTCTGGCACATTTCCAGAAAGGAGTGCCTTT
GCTGTTTTCAGCATATCGATTTTGTCACCGCTATTGCGTTCCATCCACGC
GATGATCGCTACTTTTTGAGTGGCAGCCTCGATGGCAAACTAAGGTTGTG
GAACATACCCGACAAAAAGGTGGCACTGTGGAATGAGGTAGATGGCCAGA
CAAAGCTTATAACGGCTGCCAACTTCTGCCAAAATGGACAGTTCGCCGTT
GTAGGGAGCTACGATGGTCGCTGCATATTTTATAACACGGATCAGCTGAA
ATACCACACGCAGATTCATGTGCGCTCCACCAGGGGTAAAAACCGCATTG
GCCGCAAGATCAGTGGCATTGAACCGATGCCCGGCGAAGACAAGATTCTA
GTCACATCCAACGACAGCAGAGTGCGCCTGTACGATTTGAGGGACTTGAA
CTTGTCCTGCAAGTACAAGGGCTACTTGAATGTGTCCTCGCAAATTAAGG
GCTCGTTCAGCCACGATGGAAAGTACATCATAGCCGGGTCCGAGAATCAG
TGCATCTATATTTGGAAAACAAACCACGATTACTCAAAACTCAGTTCTGT
TCGCCGCGATCGCAGCGACTTTTGGGAAGGCATTAAAGCACACAATGCTA
CGGTCACTTGTGCCATATTCGCGCCACACCCAGAGGCTATCATCAAGCCC
GAACCGGATGAGATCTCCAATGAGAAGTTGGCTCACAATCAGCCGGATCC
ACTGGTCGAGCAGCACAAAAAGGGATGTGGTTATGTGTTGGTCAGCGCCG
ATTTCAATGGCGCCATCAAGGTGTTCATCAACAAGACGAAGCCGAAGCAC
AGCAGTCTACCCTACACGGCCATTGCGGATTAGAAGCTTTCTAGACCAT
BS10686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-RC | 3327 | CG34133-PC | 661..3327 | 17..2683 | 13335 | 100 | Plus |
CG34133-RB | 3237 | CG34133-PB | 571..3237 | 17..2683 | 13335 | 100 | Plus |
CG34133-RE | 3273 | CG34133-PE | 1608..3273 | 1018..2683 | 8330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-RC | 4263 | CG34133-RC | 1004..3670 | 17..2683 | 13335 | 100 | Plus |
CG34133-RB | 3831 | CG34133-RB | 914..3580 | 17..2683 | 13335 | 100 | Plus |
CG34133-RE | 4209 | CG34133-RE | 1951..3616 | 1018..2683 | 8330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29873322..29874144 | 1578..2400 | 4115 | 100 | Plus |
3R | 32079331 | 3R | 29872540..29873265 | 855..1580 | 3630 | 100 | Plus |
3R | 32079331 | 3R | 29871586..29872223 | 17..654 | 3190 | 100 | Plus |
3R | 32079331 | 3R | 29872281..29872488 | 652..859 | 1025 | 99.5 | Plus |
3R | 32079331 | 3R | 29874409..29874566 | 2526..2683 | 790 | 100 | Plus |
3R | 32079331 | 3R | 29874205..29874346 | 2399..2540 | 665 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:32 has no hits.
BS10686.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:23 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 567..3237 | 13..2683 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:10 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 905..3583 | 13..2695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:01:02 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 914..3580 | 17..2683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:31:48 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 909..3575 | 17..2683 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:51 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34133-RB | 914..3580 | 17..2683 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:51 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29871586..29872223 | 17..654 | 100 | -> | Plus |
3R | 29872284..29872484 | 655..855 | 100 | -> | Plus |
3R | 29872541..29873264 | 856..1579 | 100 | -> | Plus |
3R | 29873324..29874142 | 1580..2398 | 100 | -> | Plus |
3R | 29874205..29874333 | 2399..2527 | 100 | -> | Plus |
3R | 29874411..29874566 | 2528..2683 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:01:02 Download gff for
BS10686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25700133..25700288 | 2528..2683 | 100 | | Plus |
arm_3R | 25697308..25697945 | 17..654 | 100 | -> | Plus |
arm_3R | 25698006..25698206 | 655..855 | 100 | -> | Plus |
arm_3R | 25698263..25698986 | 856..1579 | 100 | -> | Plus |
arm_3R | 25699046..25699864 | 1580..2398 | 100 | -> | Plus |
arm_3R | 25699927..25700055 | 2399..2527 | 100 | -> | Plus |
BS10686.pep Sequence
Translation from 16 to 2682
> BS10686.pep
MSTPRVSPKHQQSGKEVAATTTGIPSAASSAQSSGVGSMVLQEPDVIAST
KLAQSKTTDSITSSGPVAPPRRKKKSRNCSISSSDQYSLPPADNEDTDSD
TRSVKSVQGLQQKLRDDFVMEFESSLNNATSSASNITLTCSSTNTVVSAS
ASTSAASSSLPSTIAIHMRPMVASVTIAGPKLTQSLGSSSTSVHSKPSPS
NSAKSNSAPARVSSIDPNQGLNLFKAIQGGYVVKPRDEASNKAQGPSQDE
IERIEKMLMESANRPKLAGTGSNSLGSSTRYPGFYRGVNDKERRKSAGDE
DVLKQMNIYVRTRTSSGKQLTDFEILEQVPVKNLDTGENMPLSEMRSPPV
PEGWNPLSLHILKLTSHLEVIQKESDEESVIGIPPSIEGQQPDEEELETE
DGSRLKKKTARIKRFFGSTMRKTVDKAKSIASEVSHARHKEDVADIVDAM
NPEQNIKIKASSSNKGPYEFTKLQHVQDLSGEDTSAVWCMKFSSCGRLLA
TAGQDKVLRIWVLKDAYPFFQDMRNKYNADQKSSPTPSQESLVSQHSAEE
AIAMATAAEKCTGPFMPKPFCTYNGHTSDLLDVSWSKNYFILSSSMDKTV
RLWHISRKECLCCFQHIDFVTAIAFHPRDDRYFLSGSLDGKLRLWNIPDK
KVALWNEVDGQTKLITAANFCQNGQFAVVGSYDGRCIFYNTDQLKYHTQI
HVRSTRGKNRIGRKISGIEPMPGEDKILVTSNDSRVRLYDLRDLNLSCKY
KGYLNVSSQIKGSFSHDGKYIIAGSENQCIYIWKTNHDYSKLSSVRRDRS
DFWEGIKAHNATVTCAIFAPHPEAIIKPEPDEISNEKLAHNQPDPLVEQH
KKGCGYVLVSADFNGAIKVFINKTKPKHSSLPYTAIAD*
BS10686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34133-PC | 1108 | CG34133-PC | 221..1108 | 1..888 | 4595 | 100 | Plus |
CG34133-PB | 1078 | CG34133-PB | 191..1078 | 1..888 | 4595 | 100 | Plus |
CG34133-PE | 1090 | CG34133-PE | 221..1090 | 1..888 | 4476 | 98 | Plus |
wds-PB | 361 | CG17437-PB | 40..338 | 452..822 | 207 | 22.7 | Plus |
wds-PA | 361 | CG17437-PA | 40..338 | 452..822 | 207 | 22.7 | Plus |