Clone Sequence Records
BS10689.complete Sequence
1835 bp assembled on 2009-12-07
GenBank Submission: KX802729
> BS10689.complete
GAAGTTATCAGTCGACATGGCCAACTTAAGCTGGCTGAGCACCATCACCA
CCACCTCCTCCTCCATCAGCACCAGCCAGCTGCCATTGGTCAGCACAACC
AACTGGAGCCTAACGTCGCCGGGAACTACTAGCGCTATCTTGGCGGATGT
GGCTGCATCGGATGAGGATAGGAGCGGCGGGATCATTCACAACCAGTTCG
TGCAAATCTTCTTCTACGTCCTGTACGCCACGGTCTTTGTCCTGGGTGTC
TTCGGAAATGTCCTGGTTTGCTACGTAGTTCTGAGGAATCGGGCCATGCA
GACTGTGACCAATATATTCATCACGAATCTGGCCCTGTCGGACATATTGC
TCTGCGTCCTGGCGGTGCCATTTACTCCGCTTTACACGTTCATGGGTCGC
TGGGCCTTCGGCAGGAGTCTGTGCCATCTGGTGTCCTTTGCCCAGGGATG
CAGCATCTACATATCCACGCTGACCCTCACCTCGATTGCCATCGATCGGT
ACTTCGTTATCATATACCCCTTCCATCCGCGCATGAAGCTCTCCACCTGC
ATCGGGATCATAGTGAGCATCTGGGTGATAGCCCTGCTGGCCACCGTTCC
CTACGGCATGTACATGAAGATGACCAACGAGCTGGTGAACGGAACGCAGA
CAGGCAACGAGACCCTGGTGGAGGCCACTCTAATGCTAAACGGAAGCTTT
GTGGCCCAGGGATCAGGATTCATCGAGGCGCCGGACTCTACCTCGGCCAC
CCAGGCCTATATGCAGGTGATGACCGCCGGATCAACGGGACCGGAGATGC
CCTATGTGCGGGTGTACTGCGAGGAGAACTGGCCATCGGAGCAGTACCGG
AAGGTGTTCGGTGCCATCACAACCACTCTGCAGTTTGTGCTGCCCTTCTT
CATCATCTCGATTTGCTACGTGTGGATATCGGTGAAGCTAAACCAGCGGG
CCAGGGCCAAGCCGGGATCGAAATCCTCGAGACGGGAGGAGGCGGATCGG
GATCGCAAGAAGCGCACCAACCGCATGCTCATCGCCATGGTGGCGGTATT
CGGACTCAGCTGGCTGCCCATCAATGTGGTCAACATATTCGATGACTTCG
ATGACAAGTCCAACGAGTGGCGCTTCTACATCCTATTCTTCTTTGTGGCC
CACTCTATTGCCATGAGCTCCACCTGCTACAATCCCTTCCTGTACGCCTG
GCTGAACGAGAACTTCCGCAAGGAGTTCAAGCACGTGCTGCCCTGCTTTA
ATCCCTCGAACAACAACATCATCAACATCACCAGGGGCTATAATCGGAGT
GATCGGAACACCTGTGGTCCGCGACTGCATCATGGCAAGGGGGATGGTGG
CATGGGCGGTGGCAGTCTGGACGCCGACGACCAGGACGAGAACGGCATCA
CCCAGGAGACCTGTCTGCCCAAGGAGAAGCTGCTGATTATCCCCAGGGAG
CCGACTTACGGCAATGGCACGGGTGCCGTGTCGCCAATCCTTAGCGGGCG
CGGCATTAACGCCGCCCTGGTGCACGGTGGCGACCATCAGATGCACCAGC
TGCAGCCGTCACACCATCAACAGGTGGAGCTGACGAGGCGAATCCGCCGG
CGGACAGACGAGACGGACGGGGATTACCTGGACTCCGGCGACGAGCAGAC
CGTGGAGGTGCGCTTCAGCGAGACGCCGTTCGTCAGCACGGATAATACCA
CCGGGATCAGCATTCTGGAGACGAGTACGAGTCACTGCCAGGACTCGGAT
GTGATGGTCGAGCTGGGCGAGGCAATCGGCGCCGGTGGTGGGGCAGAGCT
GGGGAGGCGAATCAACTGAAAGCTTTCTAGACCAT
BS10689.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 1803 | CG7395-PB | 1..1803 | 17..1819 | 9015 | 100 | Plus |
| sNPF-R-RA | 1803 | CG7395-PA | 1..1803 | 17..1819 | 9015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 355..2157 | 17..1819 | 9015 | 100 | Plus |
| sNPF-R-RA | 3243 | CG7395-RA | 727..2529 | 17..1819 | 9015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20074113..20075915 | 1819..17 | 9015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:18:47 has no hits.
BS10689.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:48:12 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 702..2503 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:11:14 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 727..2528 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:03:19 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPFR76F-RA | 702..2503 | 17..1818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:43 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 727..2528 | 17..1818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:43 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20074114..20075915 | 17..1818 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:11:14 Download gff for
BS10689.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20067214..20069015 | 17..1818 | 100 | | Minus |
BS10689.3prime Sequence
899 bp (829 high quality bases) assembled on 2006-04-19
> BS10689.3prime
ATGGTCTAGAAAGCTTTCAGTTGATTCGCCTCCCCAGCTCTGCCCCACCA
CCGGCGCCGATTGCCTCGCCCAGCTCGACCATCACATCCGAGTCCTGGCA
GTGACTCGTACTCGTCTCCAGAATGCTGATCCCGGTGGTATTATCCGTGC
TGACGAACGGCGTCTCGCTGAAGCGCACCTCCACGGTCTGCTCGTCGCCG
GAGTCCAGGTAATCCCCGTCCGTCTCGTCTGTCCGCCGGCGGATTCGCCT
CGTCAGCTCCACCTGTTGATGGTGTGACGGCTGCAGCTGGTGCATCTGAT
GGTCGCCACCGTGCACCAGGGCGGCGTTAATGCCGCGCCCGCTAAGGATT
GGCGACACGGCACCCGTGCCATTGCCGTAAGTCGGCTCCCTGGGGATAAT
CAGCAGCTTCTCCTTGGGCAGACAGGTCTCCTGGGTGATGCCGTTCTCGT
CCTGGTCGTCGGCGTCCAGACTGCCACCGCCCATGCCACCATCCCCCTTG
CCATGATGCAGTCGCGGACCACAGGTGTTCCGATCACTCCGATTATAGCC
CCTGGTGATGTTGATGATGTTGTTGTTCGAGGGATTAAAGCAGGGCAGCA
CGTGCTTGAACTCCTTGCGGAAGTTCTCGTTCAGCCAGGCGTACAGGAAG
GGATTGTAGCAGGTGGAGCTCATGGCAATAGAGTGGGCCACAAAGAAGAA
TAGGATGTAGAAGCGCCACTCGTTGGACTTGTCATCGAAGTCATCGAATA
TGTTGACCACATTGATGGGCAGCCAGCTGAGTCCGAATACCGCCACCATG
GCGATGAGCATGCGGTTGGTGCGCTTCTTGCGATCCCGATCCGCCTCCTC
CCGTCTCGAGGATTTCGAATCCGGCTTGGCCCTGGCCCGCTGGTTTAGC
BS10689.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7395-PA | 1803 | NPFR76F-RA | 921..1803 | 899..17 | 4365 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 1275..2157 | 899..17 | 4385 | 99.8 | Minus |
| sNPF-R-RA | 3243 | CG7395-RA | 1647..2529 | 899..17 | 4385 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20074113..20074995 | 17..899 | 4385 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:05:29 has no hits.
BS10689.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:05 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 921..1803 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:28 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 921..1803 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:42:41 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 1647..2529 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:55 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 1647..2529 | 17..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:55 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20074113..20074995 | 17..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:42:41 Download gff for
BS10689.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20067213..20068095 | 17..899 | 99 | | Plus |
BS10689.5prime Sequence
920 bp (808 high quality bases) assembled on 2006-04-19
> BS10689.5prime
GAAGTTATCAGTCGACATGGCCAACTTAAGCTGGCTGAGCACCATCACCA
CCACCTCCTCCTCCATCAGCACCAGCCAGCTGCCATTGGTCAGCACAACC
AACTGGAGCCTAACGTCGCCGGGAACTACTAGCGCTATCTTGGCGGATGT
GGCTGCATCGGATGAGGATAGGAGCGGCGGGATCATTCACAACCAGTTCG
TGCAAATCTTCTTCTACGTCCTGTACGCCACGGTCTTTGTCCTGGGTGTC
TTCGGAAATGTCCTGGTTTGCTACGTAGTTCTGAGGAATCGGGCCATGCA
GACTGTGACCAATATATTCATCACGAATCTGGCCCTGTCGGACATATTGC
TCTGCGTCCTGGCGGTGCCATTTACTCCGCTTTACACGTTCATGGGTCGC
TGGGCCTTCGGCAGGAGTCTGTGCCATCTGGTGTCCTTTGCCCAGGGATG
CAGCATCTACATATCCACGCTGACCCTCACCTCGATTGCCATCGATCGGT
ACTTCGTTATCATATACCCCTTCCATCCGCGCATGAAGCTCTCCACCTGC
ATCGGGATCATAGTGAGCATCTGGGTGATAGCCCTGCTGGCCACCGTTCC
CTACGGCATGTACATGAAGATGACCAACGAGCTGGTGAACGGAACGCAGA
CAGGCAACGAGACCCTGGTGGAGGCCACTCTAATGCTAAACGGAAGCTTT
GTGGCCCAGGGATCAGGATTCATCGAGGCGCCGGACTCTACCTCGGCCAC
CCAGGCCTATATGCAGGTGATGACCGCCGGATCAACGGGACCGGAGATGC
CCTATGTGCGGGTGTACTGCGAGGAGAACTGGCCATCGGAGCAGTACCCG
AAGGTGTTCGGTGGCATCACAACCACTCTGCAGTTTGTGCTGCCCCTTCT
CATCATCTCGAATTGCTACG
BS10689.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7395-PA | 1803 | NPFR76F-RA | 1..879 | 17..895 | 4345 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-RB | 4374 | CG7395-RB | 355..1258 | 17..920 | 4430 | 99.4 | Plus |
| sNPF-R-RA | 3243 | CG7395-RA | 727..1630 | 17..920 | 4430 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20075012..20075915 | 920..17 | 4430 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:22:10 has no hits.
BS10689.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:06 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:30 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7395-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:17 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 721..1630 | 11..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:31:06 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sNPF-R-RA | 721..1630 | 11..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:31:06 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20075012..20075921 | 11..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:17 Download gff for
BS10689.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20068112..20069021 | 11..920 | 99 | | Minus |
BS10689.pep Sequence
Translation from 16 to 1818
> BS10689.pep
MANLSWLSTITTTSSSISTSQLPLVSTTNWSLTSPGTTSAILADVAASDE
DRSGGIIHNQFVQIFFYVLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNI
FITNLALSDILLCVLAVPFTPLYTFMGRWAFGRSLCHLVSFAQGCSIYIS
TLTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATVPYGMYM
KMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQ
VMTAGSTGPEMPYVRVYCEENWPSEQYRKVFGAITTTLQFVLPFFIISIC
YVWISVKLNQRARAKPGSKSSRREEADRDRKKRTNRMLIAMVAVFGLSWL
PINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYAWLNENF
RKEFKHVLPCFNPSNNNIINITRGYNRSDRNTCGPRLHHGKGDGGMGGGS
LDADDQDENGITQETCLPKEKLLIIPREPTYGNGTGAVSPILSGRGINAA
LVHGGDHQMHQLQPSHHQQVELTRRIRRRTDETDGDYLDSGDEQTVEVRF
SETPFVSTDNTTGISILETSTSHCQDSDVMVELGEAIGAGGGAELGRRIN
*
BS10689.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sNPF-R-PB | 600 | CG7395-PB | 1..600 | 1..600 | 3142 | 100 | Plus |
| sNPF-R-PA | 600 | CG7395-PA | 1..600 | 1..600 | 3142 | 100 | Plus |
| NPFR-PD | 489 | CG1147-PD | 92..489 | 69..481 | 518 | 30.6 | Plus |
| NPFR-PA | 485 | CG1147-PA | 92..438 | 69..450 | 516 | 31.6 | Plus |
| NPFR-PC | 462 | CG1147-PC | 92..381 | 69..401 | 486 | 32.1 | Plus |
