Clone BS10690 Report

Search the DGRC for BS10690

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:106
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptEfhc1.2-RA
Protein status:BS10690.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10690.3prime Sequence

894 bp (860 high quality bases) assembled on 2006-04-19

> BS10690.3prime
ATGGTCTAGAAAGCTTTTAATTGTTGGCTCGCTTTAGTTCTTCCTCTATT
CCAAGGTAGTCTAGGAACCAGGTGAAGTCCACCAGGCGCCCTTTGTGCAG
GAAGGGCAACTTGGGGCAGAGCTCAAAGGCAATGTTGAGAGGAGCAATGT
CGGGCACTTGGTCGTTGCGCATGTTGAAGAAGGCGAGAAAGTCGCGCACC
TCGATTTCGTTCTGTCCGTTGCGCTGCAGCACCATCAGTATGTCCTCCAC
CAGCTCCAAGCTGAAGGGCAGCCGGCAGCCTCGCAAAGTAGACCTCACTT
GACCTTCACTGATGTACGGCTTGCACGCCGGATTAATGTGGCTCAGATGA
TCGTTCAGCTGATCCATGCCGTTCCACAAAGCTCGCTTCAGCTCCAGTTG
GGCGGCAGCTCGCACTCGATTCCTATCGCAGCTGGGAGGCATTGCCTGCT
CAGCCGAGAAAAAGCGACACACGGTCACAATCTCATGGTTGAGCAGGCAA
TCCTTGGACAGATAGGACAGGAGAGTCGAGCGCAACGTTTCGAAGCTAAC
GGCGGTATAGTCGCCGAGGTCACCATCCGGTTTGCAGCGCAGCACAAACT
GCTTGTAATCCGGACGCACTGCCTCGCGTATCTTCTGCATGATTTTTTGA
ATGTCCGCTACGGGGAACTCGCTGGGATGTTGCTCCATGTACATCAGCGT
GAACTCATCAGCGGAAACAATGTGGAAAATGTGATCCTTAAGAGTCATTG
TGCGTCCTATATAGAAGTCATTGGCCCTGTAGTATTCAGGTCTTGATGAG
CTGTACATATCCTGACCCGGCAGTGGCACACGTGCCCTTTTAAGAAATTC
GCCGCCCAGGAAGCCCGAGTTTCGACGTGACGTCTCATAGATTT

BS10690.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG11048-PA 2298 CG11048-RA 1421..2298 894..17 4390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-RA 2572 CG11048-RA 1592..2469 894..17 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20242118..20242770 669..17 3265 100 Minus
2R 25286936 2R 20241769..20241995 894..668 1135 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:53:38 has no hits.

BS10690.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:07 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11048-PA 1421..2298 17..894 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:31 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11048-PA 1421..2298 17..894 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:47 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 1592..2469 17..894 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:15 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 1592..2469 17..894 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:15 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20241769..20241995 668..894 100 -> Minus
2R 20242120..20242770 17..667 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:47 Download gff for BS10690.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16129274..16129500 668..894 100 -> Minus
arm_2R 16129625..16130275 17..667 100   Minus

BS10690.5prime Sequence

933 bp (840 high quality bases) assembled on 2006-04-19

> BS10690.5prime
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCAAGTT
GCCAAAGGAGTTTTCTGGTCTTCCTTTGCTGGG

BS10690.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11048-PA 2298 CG11048-RA 1..913 17..929 4565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-RA 2572 CG11048-RA 156..1084 1..929 4570 99.5 Plus
Efhc1.1-RA 2559 CG8959-RA 300..599 246..545 300 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20240212..20240765 68..621 2770 100 Plus
2R 25286936 2R 20240886..20241194 621..929 1545 100 Plus
X 23542271 X 15783054..15783353 545..246 300 73.3 Minus
2R 25286936 2R 20240091..20240157 1..67 260 92.5 Plus
Blast to na_te.dros performed on 2015-02-10 23:48:14 has no hits.

BS10690.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:08 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11048-PA 1..918 17..933 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:32 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11048-PA 1..918 17..933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:04 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 160..1089 5..933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:09:50 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 160..1089 5..933 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:09:50 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20240095..20240157 5..67 93 -> Plus
2R 20240212..20240765 68..621 100 -> Plus
2R 20240887..20241199 622..933 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:04 Download gff for BS10690.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16127600..16127662 5..67 93 -> Plus
arm_2R 16127717..16128270 68..621 100 -> Plus
arm_2R 16128392..16128704 622..933 99   Plus

BS10690.complete Sequence

2330 bp assembled on 2007-11-30

GenBank Submission: FJ636720

> BS10690.complete
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCAAGTT
GCCAAAGGAGTTTTCTGGTCTTCCTTTGCCTGGGCAACAAACGGCCATGA
CGTTGCTTAATGTGCTGGGAAACAGTATGCGCGATGTGCGTTACGTAGCC
GACCCGTTGAACACTGGTCAAAAAGAGGTTCAACATTACACCGATCAGGA
TCTGCAAATAGGCGCAGTGCTAAATGTTTTTGGGAGGAGTGTCGTACTTA
CAAGCTGCGATCAGTTCACACAGAGCTACTACAGAGAAAAATACGGCATC
CAGGAATTCAGCCCTCAGCCGATTCCAGAACGAAGTGATATTCGACCGTA
CACTCAGGGTGGCATGGGATCCCGCCGATTGCCACCCTACAATGGCTGGG
GTAGCCACGAGGATTCCGAAGGCAACTGTATCACCGTGGAGCCCAAACCG
CCACAGGCCGATTTCAAGAAGCTCTTCAAGTACGACGGATGCATCCTGCG
CTTCGGAGCCAAGCTGATCTCGGCCATTCGGGATAATGGAGAGCGTGACT
TTGTCATCAGCTATTTCCTGGCCGATGACACGTTGCAAATCTATGAGACG
TCACGTCGAAACTCGGGCTTCCTGGGCGGCGAATTTCTTAAAAGGGCACG
TGTGCCACTGCCGGGTCAGGATATGTACAGCTCATCAAGACCTGAATACT
ACAGGGCCAATGACTTCTATATAGGACGCACAATGACTCTTAAGGATCAC
ATTTTCCACATTGTTTCCGCTGATGAGTTCACGCTGATGTACATGGAGCA
ACATCCCAGCGAGTTCCCCGTAGCGGACATTCAAAAAATCATGCAGAAGA
TACGCGAGGCAGTGCGTCCGGATTACAAGCAGTTTGTGCTGCGCTGCAAA
CCGGATGGTGACCTCGGCGACTATACCGCCGTTAGCTTCGAAACGTTGCG
CTCGACTCTCCTGTCCTATCTGTCCAAGGATTGCCTGCTCAACCATGAGA
TTGTGACCGTGTGTCGCTTTTTCTCGGCTGAGCAGGCAATGCCTCCCAGC
TGCGATAGGAATCGAGTGCGAGCTGCCGCCCAACTGGAGCTGAAGCGAGC
TTTGTGGAACGGCATGGATCAGCTGAACGATCATCTGAGCCACATTAATC
CGGCGTGCAAGCCGTACATCAGTGAAGGTCAAGTGAGGTCTACTTTGCGA
GGCTGCCGGCTGCCCTTCAGCTTGGAGCTGGTGGAGGACATACTGATGGT
GCTGCAGCGCAACGGACAGAACGAAATCGAGGTGCGCGACTTTCTCGCCT
TCTTCAACATGCGCAACGACCAAGTGCCCGACATTGCTCCTCTCAACATT
GCCTTTGAGCTCTGCCCCAAGTTGCCCTTCCTGCACAAAGGGCGCCTGGT
GGACTTCACCTGGTTCCTAGACTACCTTGGAATAGAGGAAGAACTAAAGC
GAGCCAACAATTAAAAGCTTTCTAGACCAT

BS10690.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-RA 2298 CG11048-PA 1..2298 17..2314 11490 100 Plus
Efhc1.1-RA 2382 CG8959-PA 224..523 246..545 300 73.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-RA 2572 CG11048-RA 156..2469 1..2314 11495 99.8 Plus
Efhc1.1-RA 2559 CG8959-RA 300..599 246..545 300 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20242118..20242770 1662..2314 3265 100 Plus
2R 25286936 2R 20240212..20240765 68..621 2770 100 Plus
2R 25286936 2R 20241474..20241995 1142..1663 2610 100 Plus
2R 25286936 2R 20240886..20241406 621..1141 2605 100 Plus
X 23542271 X 15783054..15783353 545..246 300 73.3 Minus
2R 25286936 2R 20240091..20240157 1..67 260 92.5 Plus
Blast to na_te.dros performed 2014-11-27 07:15:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 4880..4938 1233..1292 117 68.3 Plus

BS10690.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:25 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 1..2298 17..2314 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:12 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 109..2418 5..2314 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:12 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 172..2467 17..2312 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:50 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
CG11048-RA 121..2416 17..2312 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:50 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
Efhc1.2-RA 172..2467 17..2312 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:50 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20240107..20240157 17..67 100 -> Plus
2R 20240212..20240765 68..621 100 -> Plus
2R 20240887..20241406 622..1141 100 -> Plus
2R 20241474..20241995 1142..1663 100 -> Plus
2R 20242120..20242768 1664..2312 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:12 Download gff for BS10690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16127612..16127662 17..67 100 -> Plus
arm_2R 16127717..16128270 68..621 100 -> Plus
arm_2R 16128392..16128911 622..1141 100 -> Plus
arm_2R 16128979..16129500 1142..1663 100 -> Plus
arm_2R 16129625..16130273 1664..2312 100   Plus

BS10690.pep Sequence

Translation from 16 to 2313

> BS10690.pep
MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN
GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE
IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP
TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE
PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND
RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS
GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA
VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM
GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL
ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG
QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF
PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS
YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM
DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG
QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF
LDYLGIEEELKRANN*

BS10690.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Efhc1.2-PA 765 CG11048-PA 1..765 1..765 4083 100 Plus
Efhc1.1-PA 793 CG8959-PA 1..749 1..756 2385 58.5 Plus