Clone Sequence Records
BS10690.3prime Sequence
894 bp (860 high quality bases) assembled on 2006-04-19
> BS10690.3prime
ATGGTCTAGAAAGCTTTTAATTGTTGGCTCGCTTTAGTTCTTCCTCTATT
CCAAGGTAGTCTAGGAACCAGGTGAAGTCCACCAGGCGCCCTTTGTGCAG
GAAGGGCAACTTGGGGCAGAGCTCAAAGGCAATGTTGAGAGGAGCAATGT
CGGGCACTTGGTCGTTGCGCATGTTGAAGAAGGCGAGAAAGTCGCGCACC
TCGATTTCGTTCTGTCCGTTGCGCTGCAGCACCATCAGTATGTCCTCCAC
CAGCTCCAAGCTGAAGGGCAGCCGGCAGCCTCGCAAAGTAGACCTCACTT
GACCTTCACTGATGTACGGCTTGCACGCCGGATTAATGTGGCTCAGATGA
TCGTTCAGCTGATCCATGCCGTTCCACAAAGCTCGCTTCAGCTCCAGTTG
GGCGGCAGCTCGCACTCGATTCCTATCGCAGCTGGGAGGCATTGCCTGCT
CAGCCGAGAAAAAGCGACACACGGTCACAATCTCATGGTTGAGCAGGCAA
TCCTTGGACAGATAGGACAGGAGAGTCGAGCGCAACGTTTCGAAGCTAAC
GGCGGTATAGTCGCCGAGGTCACCATCCGGTTTGCAGCGCAGCACAAACT
GCTTGTAATCCGGACGCACTGCCTCGCGTATCTTCTGCATGATTTTTTGA
ATGTCCGCTACGGGGAACTCGCTGGGATGTTGCTCCATGTACATCAGCGT
GAACTCATCAGCGGAAACAATGTGGAAAATGTGATCCTTAAGAGTCATTG
TGCGTCCTATATAGAAGTCATTGGCCCTGTAGTATTCAGGTCTTGATGAG
CTGTACATATCCTGACCCGGCAGTGGCACACGTGCCCTTTTAAGAAATTC
GCCGCCCAGGAAGCCCGAGTTTCGACGTGACGTCTCATAGATTT
BS10690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11048-PA | 2298 | CG11048-RA | 1421..2298 | 894..17 | 4390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Efhc1.2-RA | 2572 | CG11048-RA | 1592..2469 | 894..17 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20242118..20242770 | 669..17 | 3265 | 100 | Minus |
2R | 25286936 | 2R | 20241769..20241995 | 894..668 | 1135 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:53:38 has no hits.
BS10690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:07 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-PA | 1421..2298 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:31 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-PA | 1421..2298 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:30:47 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 1592..2469 | 17..894 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:13:15 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 1592..2469 | 17..894 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:13:15 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20241769..20241995 | 668..894 | 100 | -> | Minus |
2R | 20242120..20242770 | 17..667 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:30:47 Download gff for
BS10690.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16129274..16129500 | 668..894 | 100 | -> | Minus |
arm_2R | 16129625..16130275 | 17..667 | 100 | | Minus |
BS10690.5prime Sequence
933 bp (840 high quality bases) assembled on 2006-04-19
> BS10690.5prime
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCAAGTT
GCCAAAGGAGTTTTCTGGTCTTCCTTTGCTGGG
BS10690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11048-PA | 2298 | CG11048-RA | 1..913 | 17..929 | 4565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Efhc1.2-RA | 2572 | CG11048-RA | 156..1084 | 1..929 | 4570 | 99.5 | Plus |
Efhc1.1-RA | 2559 | CG8959-RA | 300..599 | 246..545 | 300 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20240212..20240765 | 68..621 | 2770 | 100 | Plus |
2R | 25286936 | 2R | 20240886..20241194 | 621..929 | 1545 | 100 | Plus |
X | 23542271 | X | 15783054..15783353 | 545..246 | 300 | 73.3 | Minus |
2R | 25286936 | 2R | 20240091..20240157 | 1..67 | 260 | 92.5 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:48:14 has no hits.
BS10690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:08 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:32 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-PA | 1..918 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:28:04 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 160..1089 | 5..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:09:50 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 160..1089 | 5..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:09:50 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20240095..20240157 | 5..67 | 93 | -> | Plus |
2R | 20240212..20240765 | 68..621 | 100 | -> | Plus |
2R | 20240887..20241199 | 622..933 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:28:04 Download gff for
BS10690.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16127600..16127662 | 5..67 | 93 | -> | Plus |
arm_2R | 16127717..16128270 | 68..621 | 100 | -> | Plus |
arm_2R | 16128392..16128704 | 622..933 | 99 | | Plus |
BS10690.complete Sequence
2330 bp assembled on 2007-11-30
GenBank Submission: FJ636720
> BS10690.complete
GAAGTTATCAGTCGACATGATGCGACTACCGGGAATGCCCATGCTACCAG
GTGCGCAGTTCTACGATCGTGGAAAGCGTCGCCATCCGCGGCAGCAAACG
CTGATGCACTACCAGGGCATTCAGATGCTTTCGGACCGCCGGGAGCCGGA
ACTGGTGGAGCCCAATGGCATTGTGGCCGATCCCAAGTGTCCGCCCGTGC
CCGCCCAGCTCAATAGCCTGTGGGCTCCGAAGGCCACCACCAAGTTGCCA
CCCTGGTTGGCCTACGACAAGCAGGTGCTGTGCTTCAACGCCTACTTCAA
GGAGAACCTGACGGAGATCTATCACGCTCCCTACCAGGTGCGCAAGGTGA
AGATCTTCTTCTACCTCGAGGATGGCACCATGCAGGTCACCGAGCCGAAA
GTGGAGAACTCAGGCATACCGCAAGGCTGTCTAGTTCACCGCCAGCGCAT
CCCAAAAGCTCCACCCACCGACCGCGAGTTCATCTCCATCTTCGACCTGA
ACGTGGACACGGATGTGCAGATCTTCGATCGGGTGTATCACATCAGCGGA
TGTGACGTCTTCACGAGGCAGTTCCTCAATCGAGCTGGCATCTTCGTGCC
TGAGGCCCAGCAGGAGCCATGTGATCCCACAACAGAAATTCGAAAGCGAT
CAGGCTTGAAGCAAACGGGTAATACCGCCACTTCGGCTTTGCCCAAAAAA
CATGCGTTTGCCCAGTTCCTGGAGTTCGACAGGCGAGTCCTTAAGTTTCA
GGGATATTGGAACGATCGTAGTGAGTTTGGTGATGTGCGAAAGCTTGAAG
TCTGCTACTACCTGGCCGATGACACAATTGACATAAAGGAGAAATTTCCA
CGAAATTCTGGGCGAGAAGGTCCCACGACTTTTCTAAAACGAGGCAAGTT
GCCAAAGGAGTTTTCTGGTCTTCCTTTGCCTGGGCAACAAACGGCCATGA
CGTTGCTTAATGTGCTGGGAAACAGTATGCGCGATGTGCGTTACGTAGCC
GACCCGTTGAACACTGGTCAAAAAGAGGTTCAACATTACACCGATCAGGA
TCTGCAAATAGGCGCAGTGCTAAATGTTTTTGGGAGGAGTGTCGTACTTA
CAAGCTGCGATCAGTTCACACAGAGCTACTACAGAGAAAAATACGGCATC
CAGGAATTCAGCCCTCAGCCGATTCCAGAACGAAGTGATATTCGACCGTA
CACTCAGGGTGGCATGGGATCCCGCCGATTGCCACCCTACAATGGCTGGG
GTAGCCACGAGGATTCCGAAGGCAACTGTATCACCGTGGAGCCCAAACCG
CCACAGGCCGATTTCAAGAAGCTCTTCAAGTACGACGGATGCATCCTGCG
CTTCGGAGCCAAGCTGATCTCGGCCATTCGGGATAATGGAGAGCGTGACT
TTGTCATCAGCTATTTCCTGGCCGATGACACGTTGCAAATCTATGAGACG
TCACGTCGAAACTCGGGCTTCCTGGGCGGCGAATTTCTTAAAAGGGCACG
TGTGCCACTGCCGGGTCAGGATATGTACAGCTCATCAAGACCTGAATACT
ACAGGGCCAATGACTTCTATATAGGACGCACAATGACTCTTAAGGATCAC
ATTTTCCACATTGTTTCCGCTGATGAGTTCACGCTGATGTACATGGAGCA
ACATCCCAGCGAGTTCCCCGTAGCGGACATTCAAAAAATCATGCAGAAGA
TACGCGAGGCAGTGCGTCCGGATTACAAGCAGTTTGTGCTGCGCTGCAAA
CCGGATGGTGACCTCGGCGACTATACCGCCGTTAGCTTCGAAACGTTGCG
CTCGACTCTCCTGTCCTATCTGTCCAAGGATTGCCTGCTCAACCATGAGA
TTGTGACCGTGTGTCGCTTTTTCTCGGCTGAGCAGGCAATGCCTCCCAGC
TGCGATAGGAATCGAGTGCGAGCTGCCGCCCAACTGGAGCTGAAGCGAGC
TTTGTGGAACGGCATGGATCAGCTGAACGATCATCTGAGCCACATTAATC
CGGCGTGCAAGCCGTACATCAGTGAAGGTCAAGTGAGGTCTACTTTGCGA
GGCTGCCGGCTGCCCTTCAGCTTGGAGCTGGTGGAGGACATACTGATGGT
GCTGCAGCGCAACGGACAGAACGAAATCGAGGTGCGCGACTTTCTCGCCT
TCTTCAACATGCGCAACGACCAAGTGCCCGACATTGCTCCTCTCAACATT
GCCTTTGAGCTCTGCCCCAAGTTGCCCTTCCTGCACAAAGGGCGCCTGGT
GGACTTCACCTGGTTCCTAGACTACCTTGGAATAGAGGAAGAACTAAAGC
GAGCCAACAATTAAAAGCTTTCTAGACCAT
BS10690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Efhc1.2-RA | 2298 | CG11048-PA | 1..2298 | 17..2314 | 11490 | 100 | Plus |
Efhc1.1-RA | 2382 | CG8959-PA | 224..523 | 246..545 | 300 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:15:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Efhc1.2-RA | 2572 | CG11048-RA | 156..2469 | 1..2314 | 11495 | 99.8 | Plus |
Efhc1.1-RA | 2559 | CG8959-RA | 300..599 | 246..545 | 300 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20242118..20242770 | 1662..2314 | 3265 | 100 | Plus |
2R | 25286936 | 2R | 20240212..20240765 | 68..621 | 2770 | 100 | Plus |
2R | 25286936 | 2R | 20241474..20241995 | 1142..1663 | 2610 | 100 | Plus |
2R | 25286936 | 2R | 20240886..20241406 | 621..1141 | 2605 | 100 | Plus |
X | 23542271 | X | 15783054..15783353 | 545..246 | 300 | 73.3 | Minus |
2R | 25286936 | 2R | 20240091..20240157 | 1..67 | 260 | 92.5 | Plus |
Blast to na_te.dros performed 2014-11-27 07:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 4880..4938 | 1233..1292 | 117 | 68.3 | Plus |
BS10690.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:25 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-RA | 1..2298 | 17..2314 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:12 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-RA | 109..2418 | 5..2314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:12 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 172..2467 | 17..2312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:37:50 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11048-RA | 121..2416 | 17..2312 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:50 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Efhc1.2-RA | 172..2467 | 17..2312 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:50 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20240107..20240157 | 17..67 | 100 | -> | Plus |
2R | 20240212..20240765 | 68..621 | 100 | -> | Plus |
2R | 20240887..20241406 | 622..1141 | 100 | -> | Plus |
2R | 20241474..20241995 | 1142..1663 | 100 | -> | Plus |
2R | 20242120..20242768 | 1664..2312 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:12 Download gff for
BS10690.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16127612..16127662 | 17..67 | 100 | -> | Plus |
arm_2R | 16127717..16128270 | 68..621 | 100 | -> | Plus |
arm_2R | 16128392..16128911 | 622..1141 | 100 | -> | Plus |
arm_2R | 16128979..16129500 | 1142..1663 | 100 | -> | Plus |
arm_2R | 16129625..16130273 | 1664..2312 | 100 | | Plus |
BS10690.pep Sequence
Translation from 16 to 2313
> BS10690.pep
MMRLPGMPMLPGAQFYDRGKRRHPRQQTLMHYQGIQMLSDRREPELVEPN
GIVADPKCPPVPAQLNSLWAPKATTKLPPWLAYDKQVLCFNAYFKENLTE
IYHAPYQVRKVKIFFYLEDGTMQVTEPKVENSGIPQGCLVHRQRIPKAPP
TDREFISIFDLNVDTDVQIFDRVYHISGCDVFTRQFLNRAGIFVPEAQQE
PCDPTTEIRKRSGLKQTGNTATSALPKKHAFAQFLEFDRRVLKFQGYWND
RSEFGDVRKLEVCYYLADDTIDIKEKFPRNSGREGPTTFLKRGKLPKEFS
GLPLPGQQTAMTLLNVLGNSMRDVRYVADPLNTGQKEVQHYTDQDLQIGA
VLNVFGRSVVLTSCDQFTQSYYREKYGIQEFSPQPIPERSDIRPYTQGGM
GSRRLPPYNGWGSHEDSEGNCITVEPKPPQADFKKLFKYDGCILRFGAKL
ISAIRDNGERDFVISYFLADDTLQIYETSRRNSGFLGGEFLKRARVPLPG
QDMYSSSRPEYYRANDFYIGRTMTLKDHIFHIVSADEFTLMYMEQHPSEF
PVADIQKIMQKIREAVRPDYKQFVLRCKPDGDLGDYTAVSFETLRSTLLS
YLSKDCLLNHEIVTVCRFFSAEQAMPPSCDRNRVRAAAQLELKRALWNGM
DQLNDHLSHINPACKPYISEGQVRSTLRGCRLPFSLELVEDILMVLQRNG
QNEIEVRDFLAFFNMRNDQVPDIAPLNIAFELCPKLPFLHKGRLVDFTWF
LDYLGIEEELKRANN*
BS10690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Efhc1.2-PA | 765 | CG11048-PA | 1..765 | 1..765 | 4083 | 100 | Plus |
Efhc1.1-PA | 793 | CG8959-PA | 1..749 | 1..756 | 2385 | 58.5 | Plus |