Clone Sequence Records
BS10691.3prime Sequence
850 bp (782 high quality bases) assembled on 2006-04-19
> BS10691.3prime
ATGGTCTAGAAAGCTTTTAGGGCAGCGTGTAACGGACGTAGGGCACCTCC
ACATCCTCGCCATCCACATCGTTGCAGCAGATCTCGAAAACCAGGGATCG
CTCGTGTGGCTCCAGGCGACGCTTGGACACGCGACGCACGACCTCCGACA
TCGGCAACGGCAGTCTCTCAGAGCACTTGGCCTTGGGCATGAAGAACGAG
TACAGCATGGACACGCCCTGCGAGAGCATGGTGATCTTAAGCTTCTCATT
CTCCTCGAAATAGTTGAGGAATTCCTGCAGCGACAGCTCCCCGGTCACCT
CAAAACGGTCCCACAGCGTCCACTCCTTGCCGTAGTATGTGTTCTTGGCG
GCAGGAAGCGGCTCAGAGAAGGCCATGAACGGCAATGCCAAGTTGGCGAA
GCCGTTCTTGAATTTTACGAGATCCCGGTGGCCGACGATCAGCTTAATCA
CCTCGAGCACAGCCAATCCAGAGAGCACCGACGTGGTGGTGGCAATAGCA
GGTATGATTTTGCCAGCAATCAACTTGGACTTGTGGCGATCCGCTGGCGG
AATCTTGTAGTTGGCGGCGCGTAGATTTGAGCAGGCCACAATGAAGTCCA
TGTGCAAGTTACTGTCGTCGTCCTTTTCAAACTCAAGTGGCGTGATCTTG
GAGCTTTTGTCGGCGTTCTTTAGCAGCTCTGAAATGATCTTGTCAACGCG
ATCCTGGTCCAACTCGCCGTCATCGAAGTTATTGGCCGAGGCGGCGGCTG
CTGCCTCATTGGTTTCTATTTTCACGCCCGAACGGGGTTTAAACTCGGGC
ACCTTAACCTTCTGTACCAGCTCTGCGATCGTCTCGCGATTGCGAACCTG
BS10691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1782-PA | 3576 | Uba1-RA | 2743..3576 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 3031..3864 | 850..17 | 4170 | 100 | Minus |
| Uba1-RA | 4343 | CG1782-RA | 3031..3864 | 850..17 | 4170 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:42:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9688768..9689555 | 17..804 | 3940 | 100 | Plus |
| 2R | 25286936 | 2R | 9689609..9689658 | 801..850 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 16:42:10 has no hits.
BS10691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:09 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-PA | 2743..3576 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:33 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1782-PA | 2743..3576 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:26 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 3031..3866 | 13..850 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:37 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 3031..3866 | 13..850 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:37 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9688766..9689553 | 13..802 | 99 | <- | Plus |
| 2R | 9689611..9689658 | 803..850 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:26 Download gff for
BS10691.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5576271..5577058 | 13..802 | 99 | <- | Plus |
| arm_2R | 5577116..5577163 | 803..850 | 100 | | Plus |
BS10691.5prime Sequence
886 bp (846 high quality bases) assembled on 2006-04-19
> BS10691.5prime
GAAGTTATCAGTCGACATGTCGAGCGGTCAGCAATTGATGGCCGATTCGC
CAGCCTGCAGCTCAAGTGACCATTCGCCGCTGGCCAAAAAAAGGCGTTTA
GAGTTGTTGGGTGACGGAGTGGGGGCAATGGGAATGGAAGAGGAAGAAGC
CGGCGGAGCAACGAGCAGCAGTAGCAGCAACAACTACGAAAATCACGACA
AAGCAGGCGGCGTTGACATTTCGGGCAAGTGCCAGAGCAAGACGACTAGC
GAGCACCAGCTGGAATTGTGCGTATCGTCGTCTACCTCTGACACATGCGG
CGTTAATGCTGCGGCGAAGCGAGCCGAAAAGCAGAAACTGAAACAGAGCC
AAGGAAGCGGCGACGACGTTAGTACCTCGTCAGCAGTGGAAAAGGAAGGA
AGCAAGCGGCCGGAGAAGCGCAATTACCTGAACACCACCACAATAGAATC
GCAAGAAGCCTCCTCCAGTGCATCCGCCACTAGCAACAGCAACAACAACG
TCAGCTCCAGCAACAATAACAGTAATAACAGCACTAATAACCGACAACTG
GAAGGAAGCAGCAACATGGCTGGAAACAGTGCCGCCGCCGGCGGAGATAT
CGATGAATCGCTGTACTCGCGCCAATTGTACGTCCTGGGTCACGATGCGA
TGCGTCGGATGGCCAATTCGGATATCCTTCTGTCGGGACTTGGAGGACTC
GGCCTGGAGATAGCCAAGAATGTGATTCTGGGCGGCGTGAAATCGATCAC
CTTGCATGACACAGCAACTTGTGGGCTCCATGACTTGTCGTCGCAATTCT
ATCTCACGGAAGCCGATATCGGCAAGAATCGTGCGGAGGCCTCTTGCGCC
CAGTTGGCCGAGTTAAACAACTATGTGCGCACCGTT
BS10691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1782-PA | 3576 | Uba1-RA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 289..1158 | 17..886 | 4350 | 100 | Plus |
| Uba1-RA | 4343 | CG1782-RA | 289..1158 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9692282..9693040 | 775..17 | 3795 | 100 | Minus |
| 2R | 25286936 | 2R | 9691593..9691704 | 886..775 | 560 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 19:34:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..3036 | 155..568 | 214 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6843 | 478..566 | 212 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2470 | 431..566 | 202 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6874 | 431..579 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6822 | 478..566 | 194 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2410 | 478..566 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6807 | 481..566 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 381..566 | 182 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1149 | 443..566 | 179 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6897 | 431..566 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6922 | 320..522 | 164 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 327..566 | 163 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1166 | 470..537 | 159 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2495 | 431..567 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1582 | 487..552 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1606 | 484..549 | 137 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2647 | 482..533 | 134 | 73.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3262..3368 | 448..548 | 134 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1504..1605 | 432..530 | 124 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1474..1573 | 464..566 | 119 | 63.8 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 531..648 | 478..592 | 115 | 56.8 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7951..8026 | 471..546 | 110 | 60.5 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9395..9470 | 471..546 | 110 | 60.5 | Plus |
BS10691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:11 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:35 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1782-PA | 1..870 | 17..886 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:46:26 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1158 | 10..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:48:48 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..1158 | 10..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:48:48 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9691593..9691703 | 776..886 | 100 | <- | Minus |
| 2R | 9692282..9693044 | 10..775 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:46:26 Download gff for
BS10691.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5579098..5579208 | 776..886 | 100 | <- | Minus |
| arm_2R | 5579787..5580549 | 10..775 | 99 | | Minus |
BS10691.complete Sequence
3608 bp assembled on 2008-08-14
GenBank Submission: FJ636721
> BS10691.complete
GAAGTTATCAGTCGACATGTCGAGCGGTCAGCAATTGATGGCCGATTCGC
CAGCCTGCAGCTCAAGTGACCATTCGCCGCTGGCCAAAAAAAGGCGTTTA
GAGTTGTTGGGTGACGGAGTGGGGGCAATGGGAATGGAAGAGGAAGAAGC
CGGCGGAGCAACGAGCAGCAGTAGCAGCAACAACTACGAAAATCACGACA
AAGCAGGCGGCGTTGACATTTCGGGCAAGTGCCAGAGCAAGACGACTAGC
GAGCACCAGCTGGAATTGTGCGTATCGTCGTCTACCTCTGACACATGCGG
CGTTAATGCTGCGGCGAAGCGAGCCGAAAAGCAGAAACTGAAACAGAGCC
AAGGAAGCGGCGACGACGTTAGTACCTCGTCAGCAGTGGAAAAGGAAGGA
AGCAAGCGGCCGGAGAAGCGCAATTACCTGAACACCACCACAATAGAATC
GCAAGAAGCCTCCTCCAGTGCATCCGCCACTAGCAACAGCAACAACAACG
TCAGCTCCAGCAACAATAACAGTAATAACAGCACTAATAACCGACAACTG
GAAGGAAGCAGCAACATGGCTGGAAACAGTGCCGCCGCCGGCGGAGATAT
CGATGAATCGCTGTACTCGCGCCAATTGTACGTCCTGGGTCACGATGCGA
TGCGTCGGATGGCCAATTCGGATATCCTTCTGTCGGGACTTGGAGGACTC
GGCCTGGAGATAGCCAAGAATGTGATTCTGGGCGGCGTGAAATCGATCAC
CTTGCATGACACAGCAACTTGTGGGCTCCATGACTTGTCGTCGCAATTCT
ATCTCACGGAAGCCGATATCGGCAAGAATCGTGCGGAGGCCTCTTGCGCC
CAGTTGGCCGAGTTAAACAACTATGTGCGCACCGTTTCGCACACGGGGCC
GCTTACCGAGGAGTTCCTGCGCAAGTTTCGCGTTGTGGTACTGACCAACT
CCGACGGGGAGGAGCAGCAGAGGATCGCCAAGTTTGCCCATGAAAATGGC
ATTGCTCTGATCATCGCCGAGACGCGCGGACTGTTCGCCAAGGTGTTCTG
TGACTTTGGCGAGAGCTTTACCATTTACGATCAGGATGGCACACAGCCGA
TCTCCACCATGATAGCTAGTATCACGCACGACGCACAGGGAGTCGTCACC
TGCCTGGACGAGACGCGCCATGGTTTTAATGACGGTGACTACGTCACCTT
CTCGGAGGTGCAGGGCATGCAGGAACTGAACGGTTGTCAGCCCCTTAAGA
TCACAGTGCTGGGACCCTACACATTTAGCATCGGTGATACCAGCAAGTTT
GGAGAATATAAGAGCGGAGGAGTGGCCACCCAGGTGAAGATGCCCAAGAC
CATCAGCTTCAAGCCCCTGGCACAGGCCACTGAGGAGCCGGAGTTTTTGA
TCTCCGATTTCGCAAAGCTGGACTCGCCGGCCACGCTGCACGTGGCCTTC
AATGCCCTCTCCTGCTACCGCAAGGCCCATAATGGAGCCTTACCGCGTCC
CTGGAACGAGGAGGACGCCAACAGCTTCCTCGAGGTAGTCCGAGCCAGCA
GCAACGCGGAAGTCGACGAAAAACTGGTGCTGCAATTCGCCAAAATCTGC
TCGGGTAATACGTGCCCGCTGGACGCGGCCGTTGGTGGAATTGTGGCCCA
GGAGGTGCTTAAGGCCTGCAGTGGAAAGTTTACACCCATCTACCAGTGGT
TGTACTTTGACGCCCTGGAGTGTCTGCCCACAGAGGGTGTCGAGGAGGCG
GATGCCCAGCCGGTGGGCTCGCGCTATGATTCTCAGATTGCCATATTTGG
CAAGAAGTTCCAGGAGAAGTTGGCTGACTCGAAATGGTTTATTGTCGGCG
CCGGAGCCATTGGTTGTGAGCTATTGAAAAACTTTGGAATGCTGGGCCTG
GGAACTGGCAATGGCCAGATTTTCGTCACAGACATGGATCTCATTGAGAA
GTCGAATCTGAACCGGCAGTTCCTGTTCCGCCCGCATGATGTGCAGAAGC
CTAAATCAATGACGGCCGCCGACGCTATCAAACGGATGAATCCGGAAGTG
AATGTCACCGCATACGAGTTGCGCGTTGGCGCCGAAACAGAGAAAGTCTT
TTCCGAAGATTTCTTTGGAAAGTTGGATGGTGTAGCCAATGCGCTGGACA
ACGTGGATGCTCGCATATATATGGATCGCAAATGCATCTTCAACCGCATT
CCGCTCGTCGAGACCGGAACTCTGGGAACTTTGGGCAACGTTCAGGTGAT
TGTGCCCTTTGCCACCGAATCTTATAGCTCCTCCCAGGATCCCCCAGAAA
AGAGTATTCCCATCTGCACGCTGAAGAACTTCCCCAATGCCATCGAGCAC
ACTCTGCAGTGGGCGCGTGACGCCTTTGAGGGCGTCTTCAAGCAGTCTGC
AGAAAATGCTGCTCAGTACATCGCCGATCCTCAGTTCACCGAGCGAATCG
CCAAGCTGCCTGGTATTCAGCCTCTGGAGATCCTCGATTCCATCAAGAAA
GCTCTGATCGACGACAAACCCAAGAGTTTCGCGCACTGCGTGGAGTGGGC
CCGTCTTTATTGGGAGGATCAATATGTTAACCAGATTAAGCAGTTGCTCT
TTAACTTCCCACCTGATCAGATCACCTCCAGTGGTCAGCCGTTTTGGTCT
GGTCCCAAGCGGTGCCCCGATCCCCTGGTCTTTGATGTCAACGATCCCAT
GCACCTCGACTTTATCTACGCAGCCGCCAATCTTCGAGCTGAGGTCTATG
GCATTGAGCAGGTTCGCAATCGCGAGACGATCGCAGAGCTGGTACAGAAG
GTTAAGGTGCCCGAGTTTAAACCCCGTTCGGGCGTGAAAATAGAAACCAA
TGAGGCAGCAGCCGCCGCCTCGGCCAATAACTTCGATGACGGCGAGTTGG
ACCAGGATCGCGTTGACAAGATCATTTCAGAGCTGCTAAAGAACGCCGAC
AAAAGCTCCAAGATCACGCCACTTGAGTTTGAAAAGGACGACGACAGTAA
CTTGCACATGGACTTCATTGTGGCCTGCTCAAATCTACGCGCCGCCAACT
ACAAGATTCCGCCAGCGGATCGCCACAAGTCCAAGTTGATTGCTGGCAAA
ATCATACCTGCTATTGCCACCACCACGTCGGTGCTCTCTGGATTGGCTGT
GCTCGAGGTGATTAAGCTGATCGTCGGCCACCGGGATCTCGTAAAATTCA
AGAACGGCTTCGCCAACTTGGCATTGCCGTTCATGGCCTTCTCTGAGCCG
CTTCCTGCCGCCAAGAACACATACTACGGCAAGGAGTGGACGCTGTGGGA
CCGTTTTGAGGTGACCGGGGAGCTGTCGCTGCAGGAATTCCTCAACTATT
TCGAGGAGAATGAGAAGCTTAAGATCACCATGCTCTCGCAGGGCGTGTCC
ATGCTGTACTCGTTCTTCATGCCCAAGGCCAAGTGCTCTGAGAGACTGCC
GTTGCCGATGTCGGAGGTCGTGCGTCGCGTGTCCAAGCGTCGCCTGGAGC
CACACGAGCGATCCCTGGTTTTCGAGATCTGCTGCAACGATGTGGATGGC
GAGGATGTGGAGGTGCCCTACGTCCGTTACACGCTGCCCTAAAAGCTTTC
TAGACCAT
BS10691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RA | 3576 | CG1782-PA | 1..3576 | 17..3592 | 17880 | 100 | Plus |
| Uba1-RC | 3027 | CG1782-PC | 1..3027 | 566..3592 | 15135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-RC | 4343 | CG1782-RC | 289..3864 | 17..3592 | 17880 | 100 | Plus |
| Uba1-RA | 4343 | CG1782-RA | 289..3864 | 17..3592 | 17880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9689982..9691704 | 2497..775 | 8615 | 100 | Minus |
| 2R | 25286936 | 2R | 9688768..9689555 | 3592..2805 | 3940 | 100 | Minus |
| 2R | 25286936 | 2R | 9692282..9693040 | 775..17 | 3795 | 100 | Minus |
| 2R | 25286936 | 2R | 9689609..9689921 | 2808..2496 | 1565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 10:19:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..3036 | 155..568 | 214 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6843 | 478..566 | 212 | 74.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2470 | 431..566 | 202 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6874 | 431..579 | 199 | 63.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6822 | 478..566 | 194 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2410 | 478..566 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6807 | 481..566 | 185 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 381..566 | 182 | 61.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1023..1149 | 443..566 | 179 | 63.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6897 | 431..566 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6922 | 320..522 | 164 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 327..566 | 163 | 57 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1099..1166 | 470..537 | 159 | 73.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2356..2495 | 431..567 | 151 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1582 | 487..552 | 147 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1606 | 484..549 | 137 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2647 | 482..533 | 134 | 73.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1504..1605 | 432..530 | 124 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1474..1573 | 464..566 | 119 | 63.8 | Plus |
BS10691.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:50:23 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 285..3866 | 10..3596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:18 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 289..3862 | 17..3590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:58 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 289..3862 | 17..3590 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:19:00 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uba1-RA | 289..3862 | 17..3590 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:19:00 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9688770..9689553 | 2807..3590 | 100 | <- | Minus |
| 2R | 9689611..9689919 | 2498..2806 | 100 | <- | Minus |
| 2R | 9689982..9691703 | 776..2497 | 100 | <- | Minus |
| 2R | 9692282..9693040 | 17..775 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:18 Download gff for
BS10691.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5576275..5577058 | 2807..3590 | 100 | <- | Minus |
| arm_2R | 5577116..5577424 | 2498..2806 | 100 | <- | Minus |
| arm_2R | 5577487..5579208 | 776..2497 | 100 | <- | Minus |
| arm_2R | 5579787..5580545 | 17..775 | 100 | | Minus |
BS10691.pep Sequence
Translation from 16 to 3591
> BS10691.pep
MSSGQQLMADSPACSSSDHSPLAKKRRLELLGDGVGAMGMEEEEAGGATS
SSSSNNYENHDKAGGVDISGKCQSKTTSEHQLELCVSSSTSDTCGVNAAA
KRAEKQKLKQSQGSGDDVSTSSAVEKEGSKRPEKRNYLNTTTIESQEASS
SASATSNSNNNVSSSNNNSNNSTNNRQLEGSSNMAGNSAAAGGDIDESLY
SRQLYVLGHDAMRRMANSDILLSGLGGLGLEIAKNVILGGVKSITLHDTA
TCGLHDLSSQFYLTEADIGKNRAEASCAQLAELNNYVRTVSHTGPLTEEF
LRKFRVVVLTNSDGEEQQRIAKFAHENGIALIIAETRGLFAKVFCDFGES
FTIYDQDGTQPISTMIASITHDAQGVVTCLDETRHGFNDGDYVTFSEVQG
MQELNGCQPLKITVLGPYTFSIGDTSKFGEYKSGGVATQVKMPKTISFKP
LAQATEEPEFLISDFAKLDSPATLHVAFNALSCYRKAHNGALPRPWNEED
ANSFLEVVRASSNAEVDEKLVLQFAKICSGNTCPLDAAVGGIVAQEVLKA
CSGKFTPIYQWLYFDALECLPTEGVEEADAQPVGSRYDSQIAIFGKKFQE
KLADSKWFIVGAGAIGCELLKNFGMLGLGTGNGQIFVTDMDLIEKSNLNR
QFLFRPHDVQKPKSMTAADAIKRMNPEVNVTAYELRVGAETEKVFSEDFF
GKLDGVANALDNVDARIYMDRKCIFNRIPLVETGTLGTLGNVQVIVPFAT
ESYSSSQDPPEKSIPICTLKNFPNAIEHTLQWARDAFEGVFKQSAENAAQ
YIADPQFTERIAKLPGIQPLEILDSIKKALIDDKPKSFAHCVEWARLYWE
DQYVNQIKQLLFNFPPDQITSSGQPFWSGPKRCPDPLVFDVNDPMHLDFI
YAAANLRAEVYGIEQVRNRETIAELVQKVKVPEFKPRSGVKIETNEAAAA
ASANNFDDGELDQDRVDKIISELLKNADKSSKITPLEFEKDDDSNLHMDF
IVACSNLRAANYKIPPADRHKSKLIAGKIIPAIATTTSVLSGLAVLEVIK
LIVGHRDLVKFKNGFANLALPFMAFSEPLPAAKNTYYGKEWTLWDRFEVT
GELSLQEFLNYFEENEKLKITMLSQGVSMLYSFFMPKAKCSERLPLPMSE
VVRRVSKRRLEPHERSLVFEICCNDVDGEDVEVPYVRYTLP*
BS10691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uba1-PA | 1191 | CG1782-PA | 1..1191 | 1..1191 | 6149 | 100 | Plus |
| Uba1-PC | 1008 | CG1782-PC | 1..1008 | 184..1191 | 5231 | 100 | Plus |
| Uba2-PA | 700 | CG7528-PA | 8..220 | 593..810 | 350 | 37.3 | Plus |
| Uba3-PA | 450 | CG13343-PA | 53..234 | 609..784 | 255 | 33.5 | Plus |
| Aos1-PA | 337 | CG12276-PA | 16..180 | 194..355 | 226 | 33.9 | Plus |
