Clone Sequence Records
BS10693.3prime Sequence
844 bp (804 high quality bases) assembled on 2006-04-19
> BS10693.3prime
ATGGTCTAGAAAGCTTCTACTCCTCCTCTTCCAGCGACTTTTCGGGTAGT
CCGTACTTTGGGCAACACATGCCCTCCGTACCGTCCATGTTGAAGCAGAA
AATGCTGCGCTCCAGTTCGGTTGGTTCGTGTGGCACGATGCCGTGGACTT
CCCTTAGCTCCGCTTCGGGAAACCAGGCGGGATCCGAGTCTTCCACCACC
TTGATTCCGCACAGACGCAGCACCGCCACAATTGGTATCCACAGAATGGA
TGAGAGTATAAGGAAGAAGGCAACGACAATGCACCAGTGCGGCCACTCCA
TGCCCTCAGTGGCTCCCTTCGATCCAATCCAGGCAGGATAGCTACTGCCC
TCGGTCAAAAGTTGATAGAAGGAGGCCAGCAGAATGGTGACCATTGCACA
GGGCGATAGGTACTTCCAGCAGAACATCCAGTAGAAATTCGGACGCGAAC
CGGTCATCATCTCAATATCGTCCGAGAAACGGCGTACCCCATAGATGTAG
CTAATCGAAAGGCATTCGAAGAGCGCAATGATCAGCAGCGGGAAATTGCC
TGCAAAGCTGTCCATCAATTGAAATATATAGCTCCCGGCTCCATTGGCAA
AGCACATGGAGATTGTGCAGCAGGAAAAGCAGAGTGCCCCCACTATATAT
TCCTTGGGCAGGTTGGGAAAAAGTTTCATGTCCACCAGGGATGTGACCAC
GCCCTCCAGCGTACCGAATTGCGAGTCGATTCCCAGGGTAAAGAGCATCA
GAAAAAATAGGACAGCCCAGAGTTGTGCACCCGGAAACTGATTGATCGCC
TCCGTGAAGATGATGAAGGCCAGACCTGTTCCGGAAGCACTATT
BS10693.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-PB | 1989 | CG10804-RB | 1162..1989 | 844..17 | 4140 | 100 | Minus |
| CG10804-PA | 2049 | CG10804-RA | 1225..2049 | 841..17 | 4125 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-RD | 4353 | CG10804-RD | 1638..2466 | 844..16 | 4145 | 100 | Minus |
| CG10804-RC | 4536 | CG10804-RC | 2047..2875 | 844..16 | 4145 | 100 | Minus |
| CG10804-RB | 4127 | CG10804-RB | 1638..2466 | 844..16 | 4145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3478611..3479033 | 216..638 | 2115 | 100 | Plus |
| X | 23542271 | X | 3479127..3479331 | 637..841 | 1025 | 100 | Plus |
| X | 23542271 | X | 3478350..3478550 | 16..216 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:00:44 has no hits.
BS10693.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:14 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-PB | 1162..1989 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:40 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-PB | 1162..1989 | 17..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:30:20 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 1638..2466 | 16..844 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:56 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 1638..2466 | 16..844 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:56 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3478350..3478549 | 16..215 | 100 | <- | Plus |
| X | 3478611..3479032 | 216..637 | 100 | <- | Plus |
| X | 3479128..3479333 | 638..844 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:30:20 Download gff for
BS10693.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3372383..3372582 | 16..215 | 100 | <- | Plus |
| arm_X | 3372644..3373065 | 216..637 | 100 | <- | Plus |
| arm_X | 3373161..3373366 | 638..844 | 99 | | Plus |
BS10693.5prime Sequence
882 bp (805 high quality bases) assembled on 2006-04-19
> BS10693.5prime
GAAGTTATCAGTCGACATGTCCGACGCCTTCGACGAGTCCTCGGAACTGG
AACAGGATCCGCCGCCCTTCGGATCCGAGGCTAGCACTTCGAAGGCCAAG
GCCGAACTGGTGGCCATTGCGACTGCCTCTGCGGATCAGCAGGATATCGT
CGAGGGCGAGAAGGAGGGCGAGGAGCGAGAGAGTTGGGACAGCAAGATTA
TGTTCTTGCTGGCCACCATCGGCTATGCCGTTGGCCTGGGAAATGTGTGG
CGTTTTCCCTATTTGGCGCAGAAGAATGGCGGCGGTGCCTTCCTGGTGCC
CTACTTCATAATGCTGTGCATCCAGGGCATACCGATCTTCTATCTGGAAC
TGGCAATTGGCCAGCGACTGCGAAAAGGAGCCATCGGCGTTTGGAGCCAA
GTATCGCCGTATCTAGGCGGCATTGGTATCTCATCGGCGGTGGTCAGCTA
TATAGTGGCGTTGTACTATAACACTATCATTGCCTGGTGCCTGATCTATC
TGCTACACAGTTTCGAATCGCCATTACCCTGGGCGGACTGTCCGACGAGG
TTGTATAAGAATTTTACCTACGACCACGAACCGGAGTGTGTGGCCTCATC
TCCGACGCAGTTCTATTGGTATCGCACCACATTGCAGTGCTCGGAGAGTG
TGGATATGCCGGAGAACTTCAATTACCACATGGCCATTGCGCTAATTGTC
TCCTGGTTTTTGGTCTACATCTGCATGGTCCAGGGCATCACGTCATCCGG
CAAGATCGTCTATATGACGGCCATATTCCCCTATGTGGTGCTTATAATAT
TTTTTTTTCGGGGCATCACCTTGAAGGGTGCTGCAGATGGGGTGGCACAC
TTGTTTACCCCACGATGGGAAACTCTATTGGA
BS10693.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-PA | 2049 | CG10804-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
| CG10804-PB | 1989 | CG10804-RB | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-RD | 4353 | CG10804-RD | 476..1342 | 16..882 | 4335 | 100 | Plus |
| CG10804-RC | 4536 | CG10804-RC | 885..1751 | 16..882 | 4335 | 100 | Plus |
| CG10804-RB | 4127 | CG10804-RB | 476..1342 | 16..882 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3479690..3480350 | 882..222 | 3305 | 100 | Minus |
| X | 23542271 | X | 3480417..3480628 | 227..16 | 1045 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:28:34 has no hits.
BS10693.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:15 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:41 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-PB | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:36:31 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RA | 466..1341 | 7..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:12:56 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 466..1341 | 7..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:12:56 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3479691..3480349 | 223..881 | 100 | <- | Minus |
| X | 3480422..3480638 | 7..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:36:31 Download gff for
BS10693.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3373724..3374382 | 223..881 | 100 | <- | Minus |
| arm_X | 3374455..3374671 | 7..222 | 98 | | Minus |
BS10693.complete Sequence
2021 bp assembled on 2007-12-11
GenBank Submission: FJ636722
> BS10693.complete
GAAGTTATCAGTCGACATGTCCGACGCCTTCGACGAGTCCTCGGAACTGG
AACAGGATCCGCCGCCCTTCGGATCCGAGGCTAGCACTTCGAAGGCCAAG
GCCGAACTGGTGGCCATTGCGACTGCCTCTGCGGATCAGCAGGATATCGT
CGAGGGCGAGAAGGAGGGCGAGGAGCGAGAGAGTTGGGACAGCAAGATTA
TGTTCTTGCTGGCCACCATCGGCTATGCCGTTGGCCTGGGAAATGTGTGG
CGTTTTCCCTATTTGGCGCAGAAGAATGGCGGCGGTGCCTTCCTGGTGCC
CTACTTCATAATGCTGTGCATCCAGGGCATACCGATCTTCTATCTGGAAC
TGGCAATTGGCCAGCGACTGCGAAAAGGAGCCATCGGCGTTTGGAGCCAA
GTATCGCCGTATCTAGGCGGCATTGGTATCTCATCGGCGGTGGTCAGCTA
TATAGTGGCGTTGTACTATAACACTATCATTGCCTGGTGCCTGATCTATC
TGCTACACAGTTTCGAATCGCCATTACCCTGGGCGGACTGTCCGACGAGG
TTGTATAAGAATTTTACCTACGACCACGAACCGGAGTGTGTGGCCTCATC
TCCGACGCAGTTCTATTGGTATCGCACCACATTGCAGTGCTCGGAGAGTG
TGGATATGCCGGAGAACTTCAATTACCACATGGCCATTGCGCTAATTGTC
TCCTGGTTTTTGGTCTACATCTGCATGGTCCAGGGCATCACGTCATCCGG
CAAGATCGTCTATATGACGGCCATATTCCCCTATGTGGTGCTTATAATAT
TTTTTTTTCGGGGCATCACCTTGAAGGGTGCTGCAGATGGGGTGGCACAC
TTGTTTACCCCACGATGGGAAACTCTATTGGATCCAGTCGTTTGGCTGGA
GGCCGGCACACAGATCTTCTTCTCGCTGGGATTGGCCTTTGGCGGTCTGA
TAGCCTTCAGTTCGTACAATCCGGCGAATAATAATTGCTACAGGGACGCC
ATACTCGTATCGCTCACCAATTGTGGCACATCCATGTTTGCCGGAGTGGT
GGTATTCTCTGTCATTGGGTTTAAGGCCACGGCGACCTTTGATCGCTGCA
CTGAGGAGCGTAATGGGCTTGTGGCCCAGAACAAGACGCACAACCTGCCT
GTCTGCGATCTTCAAACGGAATTGGCCAATAGTGCTTCCGGAACAGGTCT
GGCCTTCATCATCTTCACGGAGGCGATCAATCAGTTTCCGGGTGCACAAC
TCTGGGCTGTCCTATTTTTTCTGATGCTCTTTACCCTGGGAATCGACTCG
CAATTCGGTACGCTGGAGGGCGTGGTCACATCCCTGGTGGACATGAAACT
TTTTCCCAACCTGCCCAAGGAATATATAGTGGGGGCACTCTGCTTTTCCT
GCTGCACAATCTCCATGTGCTTTGCCAATGGAGCCGGGAGCTATATATTT
CAATTGATGGACAGCTTTGCAGGCAATTTCCCGCTGCTGATCATTGCGCT
CTTCGAATGCCTTTCGATTAGCTACATCTATGGGGTACGCCGTTTCTCGG
ACGATATTGAGATGATGACCGGTTCGCGTCCGAATTTCTACTGGATGTTC
TGCTGGAAGTACCTATCGCCCTGTGCAATGGTCACCATTCTGCTGGCCTC
CTTCTATCAACTTTTGACCGAGGGCAGTAGCTATCCTGCCTGGATTGGAT
CGAAGGGAGCCACTGAGGGCATGGAGTGGCCGCACTGGTGCATTGTCGTT
GCCTTCTTCCTTATACTCTCATCCATTCTGTGGATACCAATTGTGGCGGT
GCTGCGTCTGTGCGGAATCAAGGTGGTGGAAGACTCGGATCCCGCCTGGT
TTCCCGAAGCGGAGCTAAGGGAAGTCCACGGCATCGTGCCACACGAACCA
ACCGAACTGGAGCGCAGCATTTTCTGCTTCAACATGGACGGTACGGAGGG
CATGTGTTGCCCAAAGTACGGACTACCCGAAAAGTCGCTGGAAGAGGAGG
AGTAGAAGCTTTCTAGACCAT
BS10693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-RC | 2181 | CG10804-PC | 192..2181 | 16..2005 | 9950 | 100 | Plus |
| CG10804-RD | 1989 | CG10804-PD | 1..1989 | 17..2005 | 9945 | 100 | Plus |
| CG10804-RB | 1989 | CG10804-PB | 1..1989 | 17..2005 | 9945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-RD | 4353 | CG10804-RD | 476..2466 | 16..2006 | 9955 | 100 | Plus |
| CG10804-RC | 4536 | CG10804-RC | 885..2875 | 16..2006 | 9955 | 100 | Plus |
| CG10804-RB | 4127 | CG10804-RB | 476..2466 | 16..2006 | 9955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3479392..3480350 | 1180..222 | 4795 | 100 | Minus |
| X | 23542271 | X | 3478611..3479033 | 1806..1384 | 2115 | 100 | Minus |
| X | 23542271 | X | 3480417..3480628 | 227..16 | 1045 | 99.5 | Minus |
| X | 23542271 | X | 3479127..3479331 | 1385..1181 | 1025 | 100 | Minus |
| X | 23542271 | X | 3478350..3478550 | 2006..1806 | 1005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:24:36 has no hits.
BS10693.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:26 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RC | 182..2181 | 7..2005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:44:14 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RC | 182..2182 | 7..2006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:39 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 477..2465 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:42:31 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RC | 193..2181 | 17..2005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:56 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10804-RB | 477..2465 | 17..2005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:56 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3479128..3479331 | 1181..1384 | 100 | <- | Minus |
| X | 3478351..3478549 | 1807..2005 | 100 | <- | Minus |
| X | 3478611..3479032 | 1385..1806 | 100 | <- | Minus |
| X | 3479392..3480349 | 223..1180 | 100 | <- | Minus |
| X | 3480422..3480627 | 17..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:39 Download gff for
BS10693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3373161..3373364 | 1181..1384 | 100 | <- | Minus |
| arm_X | 3372384..3372582 | 1807..2005 | 100 | <- | Minus |
| arm_X | 3372644..3373065 | 1385..1806 | 100 | <- | Minus |
| arm_X | 3373425..3374382 | 223..1180 | 100 | <- | Minus |
| arm_X | 3374455..3374660 | 17..222 | 100 | | Minus |
BS10693.pep Sequence
Translation from 16 to 2004
> BS10693.pep
MSDAFDESSELEQDPPPFGSEASTSKAKAELVAIATASADQQDIVEGEKE
GEERESWDSKIMFLLATIGYAVGLGNVWRFPYLAQKNGGGAFLVPYFIML
CIQGIPIFYLELAIGQRLRKGAIGVWSQVSPYLGGIGISSAVVSYIVALY
YNTIIAWCLIYLLHSFESPLPWADCPTRLYKNFTYDHEPECVASSPTQFY
WYRTTLQCSESVDMPENFNYHMAIALIVSWFLVYICMVQGITSSGKIVYM
TAIFPYVVLIIFFFRGITLKGAADGVAHLFTPRWETLLDPVVWLEAGTQI
FFSLGLAFGGLIAFSSYNPANNNCYRDAILVSLTNCGTSMFAGVVVFSVI
GFKATATFDRCTEERNGLVAQNKTHNLPVCDLQTELANSASGTGLAFIIF
TEAINQFPGAQLWAVLFFLMLFTLGIDSQFGTLEGVVTSLVDMKLFPNLP
KEYIVGALCFSCCTISMCFANGAGSYIFQLMDSFAGNFPLLIIALFECLS
ISYIYGVRRFSDDIEMMTGSRPNFYWMFCWKYLSPCAMVTILLASFYQLL
TEGSSYPAWIGSKGATEGMEWPHWCIVVAFFLILSSILWIPIVAVLRLCG
IKVVEDSDPAWFPEAELREVHGIVPHEPTELERSIFCFNMDGTEGMCCPK
YGLPEKSLEEEE*
BS10693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10804-PD | 662 | CG10804-PD | 1..662 | 1..662 | 3523 | 100 | Plus |
| CG10804-PC | 726 | CG10804-PC | 65..726 | 1..662 | 3523 | 100 | Plus |
| CG10804-PB | 662 | CG10804-PB | 1..662 | 1..662 | 3523 | 100 | Plus |
| CG10804-PA | 682 | CG10804-PA | 1..682 | 1..662 | 3492 | 97.1 | Plus |
| CG43066-PA | 675 | CG5226-PA | 54..617 | 53..597 | 1470 | 46.8 | Plus |
