Clone Sequence Records
BS10694.3prime Sequence
904 bp (740 high quality bases) assembled on 2006-04-19
> BS10694.3prime
ATGGTCTAGAAAGCTTTTTAGACAGCCTGCGAGGTTGCATAGGGTGGCTG
CGTGGAGCTGTCGTTGCCGTACGCTGATCGCGGCCCTGCTCCGTAGTTCG
AGGCGCCCTCCTGCTTCACATAGTTGCTGTAGTCGTAGTCGTACCCGGAT
CCATAGCCGCCGTAGTCGTACTCAGAGCCAGACTTGGAGGCCGAATTACC
GGGTCCGGTCCGGGGCATGCCGCCCACTGGTCCAGTGGTCGAGGGACCGC
CCGTCGCCCAGGCTTGAGCACGCGAGTACATGTCAGTGGCGGTGCCCGCT
CCGGCTCCTGGTGCCCCAGTGGGTCCGGCAGAGTTAGGTGGCATGTTCCA
CGAGTTCCAGCTGCCGCCGCCCGATGGTCCCGAAGGAGCTCCGGTCGACG
TCGAGTTATACATGTCGTATCCGCCGTAGCCCTGCGTCTGCTGAGGTCCA
GCGTAGTTCGACCACTGCGGTGGTGGTCCCTGGGGTCCTGGTGGAGCTCC
CCATCCCTGGTACGATCCTGGGCCACTGTTGCCGTAGCCGTATTGTTGCT
GCTGCGGCGAGGTGCCCCAACCCTGATAGCCAGGCATCATATTCGGCGCT
CCAATGGGCATATTCAGCGGCGGTCCACCCATCTGGCCATTCTGGCCCTG
CATCATGTTGATGGGAGCATGGTGCGGTCCCCAGTGGCTGCACTCGTTAC
CAAGCTTGCCATAGGCGCCTCCCACGGTACTGTTGTTGGAGTTTTGGCCG
CCAGATCCATCACGAGGCTCGGCCTTCTTGATTTCGACCTGCTTGCCATT
CAGATTGATGTACCGCTCGTTGGTCACGTGCTCAACGGAGGACTCCTCCT
CGAAGGAGAGAAAGCCGAAGCCGCGGGACTTCTTCTTCTCCTGGTCGTAC
ATGA
BS10694.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10377-PA | 1266 | Hrb27C-RA | 380..1266 | 904..18 | 4435 | 100 | Minus |
CG10377-PC | 1266 | Hrb27C-RC | 380..1266 | 904..18 | 4435 | 100 | Minus |
CG10377-PB | 1266 | Hrb27C-RB | 380..1266 | 904..18 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hrb27C-RE | 2110 | CG10377-RE | 633..1520 | 904..17 | 4440 | 100 | Minus |
Hrb27C-RD | 2137 | CG10377-RD | 660..1547 | 904..17 | 4440 | 100 | Minus |
Hrb27C-RH | 8240 | CG10377-RH | 752..1639 | 904..17 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6924682..6925456 | 791..17 | 3875 | 100 | Minus |
2L | 23513712 | 2L | 6924285..6924402 | 904..787 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:05:25 has no hits.
BS10694.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:16 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10377-PB | 381..1266 | 18..903 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:43 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10377-PB | 381..1266 | 18..903 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:42:39 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 753..1642 | 14..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:40:49 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 753..1642 | 14..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:40:49 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6924286..6924400 | 789..903 | 100 | -> | Minus |
2L | 6924685..6925459 | 14..788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:42:39 Download gff for
BS10694.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6924286..6924400 | 789..903 | 100 | -> | Minus |
arm_2L | 6924685..6925459 | 14..788 | 99 | | Minus |
BS10694.5prime Sequence
879 bp (816 high quality bases) assembled on 2006-04-19
> BS10694.5prime
GAAGTTATCAGTCGACATGGAGGAAGACGAGAGGGGCAAACTTTTTGTGG
GCGGTCTATCCTGGGAGACGACGCAGGAGAACCTGTCGCGCTACTTCTGC
CGCTTCGGGGACATCATTGACTGTGTGGTGATGAAGAACAACGAGAGCGG
CAGGTCGCGCGGCTTTGGCTTCGTTACCTTCGCCGATCCCACCAACGTCA
ACCACGTGCTGCAGAACGGACCGCACACGCTCGACGGTCGCACCATCGAC
CCCAAGCCGTGCAATCCGCGCACTCTGCAGAAACCGAAGAAGGGCGGCGG
CTACAAGGTCTTCCTGGGTGGCCTGCCCTCGAACGTCACCGAGACCGATC
TGCGGACCTTCTTTAACCGCTACGGCAAGGTCACCGAGGTGGTTATCATG
TACGACCAGGAGAAGAAGAAGTCCCGCGGCTTCGGCTTTCTCTCCTTCGA
GGAGGAGTCCTCCGTTGAGCACGTGACCAACGAGCGGTACATCAATCTGA
ATGGCAAGCAGGTCGAAATCAAGAAGGCCGAGCCTCGTGATGGATCTGGC
GGCCAAAACTCCAACAACAGTACCGTGGGAGGCGCCTATGGCAAGCTTGG
TAACGAGTGCAGCCACTGGGGACCGCACCATGCTCCCATCAACATGATGC
AGGGCCAGAATGGCCAGATGGGTGGACCGCCGCTGAATATGCCCATTGGA
GCGCCGAATATGATGCCTGGCTATCAGGGTTGGGGCACCTCGCCGCAGCA
GCAACAATACGGCTACGGCAACAGTGGCCCAGGATCGTACCAGGGATGGG
GAGCTCCACCAGGACCCCAGGGACCACCACCGCAGTGGTCGAACTACGCT
GGACCTCAGCAGACGCAGGGCTACNGCGG
BS10694.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10377-PA | 1266 | Hrb27C-RA | 1..863 | 17..879 | 4296 | 99.8 | Plus |
CG10377-PC | 1266 | Hrb27C-RC | 1..863 | 17..879 | 4296 | 99.8 | Plus |
CG10377-PB | 1266 | Hrb27C-RB | 1..863 | 17..879 | 4296 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hrb27C-RE | 2110 | CG10377-RE | 253..1116 | 16..879 | 4309 | 99.9 | Plus |
Hrb27C-RD | 2137 | CG10377-RD | 280..1143 | 16..879 | 4309 | 99.9 | Plus |
Hrb27C-RH | 8240 | CG10377-RH | 372..1235 | 16..879 | 4309 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6923905..6924402 | 16..513 | 2490 | 100 | Plus |
2L | 23513712 | 2L | 6924682..6925052 | 509..879 | 1844 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:52:03 has no hits.
BS10694.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:17 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10377-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:44 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10377-PB | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:03:30 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 366..1235 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:49:27 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 366..1235 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:49:27 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6923899..6924400 | 9..511 | 99 | -> | Plus |
2L | 6924685..6925052 | 512..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:03:30 Download gff for
BS10694.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6923899..6924400 | 9..511 | 99 | -> | Plus |
arm_2L | 6924685..6925052 | 512..879 | 99 | | Plus |
BS10694.complete Sequence
1299 bp assembled on 2009-02-12
> BS10694.complete
GAAGTTATCAGTCGACATGGAGGAAGACGAGAGGGGCAAACTTTTTGTGG
GCGGTCTATCCTGGGAGACGACGCAGGAGAACCTGTCGCGCTACTTCTGC
CGCTTCGGGGACATCATTGACTGTGTGGTGATGAAGAACAACGAGAGCGG
CAGGTCGCGCGGCTTTGGCTTCGTTACCTTCGCCGATCCCACCAACGTCA
ACCACGTGCTGCAGAACGGACCGCACACGCTCGACGGTCGCACCATCGAC
CCCAAGCCGTGCAATCCGCGCACTCTGCAGAAACCGAAGAAGGGCGGCGG
CTACAAGGTCTTCCTGGGTGGCCTGCCCTCGAACGTCACCGAGACCGATC
TGCGGACCTTCTTTAACCGCTACGGCAAGGTCACCGAGGTGGTTATCATG
TACGACCAGGAGAAGAAGAAGTCCCGCGGCTTCGGCTTTCTCTCCTTCGA
GGAGGAGTCCTCCGTTGAGCACGTGACCAACGAGCGGTACATCAATCTGA
ATGGCAAGCAGGTCGAAATCAAGAAGGCCGAGCCTCGTGATGGATCTGGC
GGCCAAAACTCCAACAACAGTACCGTGGGAGGCGCCTATGGCAAGCTTGG
TAACGAGTGCAGCCACTGGGGACCGCACCATGCTCCCATCAACATGATGC
AGGGCCAGAATGGCCAGATGGGTGGACCGCCGCTGAATATGCCCATTGGA
GCGCCGAATATGATGCCTGGCTATCAGGGTTGGGGCACCTCGCCGCAGCA
GCAACAATACGGCTACGGCAACAGTGGCCCAGGATCGTACCAGGGATGGG
GAGCTCCACCAGGACCCCAGGGACCACCACCGCAGTGGTCGAACTACGCT
GGACCTCAGCAGACGCAGGGCTACGGCGGATACGACATGTATAACTCGAC
GTCGACCGGAGCTCCTTCGGGACCATCGGGCGGCGGCAGCTGGAACTCGT
GGAACATGCCACCTAACTCTGCCGGACCCACTGGGGCACCAGGAGCCGGA
GCGGGCACCGCCACTGACATGTACTCGCGTGCTCAAGCCTGGGCGACGGG
CGGTCCCTCGACCACTGGACCAGTGGGCGGCATGCCCCGGACCGGACCCG
GTAATTCGGCCTCCAAGTCTGGCTCTGAGTACGACTACGGCGGCTATGGA
TCCGGGTACGACTACGACTACAGCAACTATGTGAAGCAGGAGGGCGCCTC
GAACTACGGAGCAGGGCCGCGATCAGCGTACGGCAACGACAGCTCCACGC
AGCCACCCTATGCAACCTCGCAGGCTGTCTAAAAAGCTTTCTAGACCAT
BS10694.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hrb27C-RE | 1266 | CG10377-PE | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Hrb27C-RD | 1266 | CG10377-PD | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Hrb27C-RH | 1266 | CG10377-PH | 1..1266 | 17..1282 | 6330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hrb27C-RE | 2110 | CG10377-RE | 253..1520 | 16..1283 | 6340 | 100 | Plus |
Hrb27C-RD | 2137 | CG10377-RD | 280..1547 | 16..1283 | 6340 | 100 | Plus |
Hrb27C-RH | 8240 | CG10377-RH | 372..1639 | 16..1283 | 6340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6924682..6925456 | 509..1283 | 3875 | 100 | Plus |
2L | 23513712 | 2L | 6923905..6924402 | 16..513 | 2490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:44:44 has no hits.
BS10694.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-12 18:08:37 Download gff for
BS10694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RB | 352..1615 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:36 Download gff for
BS10694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 373..1636 | 17..1280 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:09 Download gff for
BS10694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hrb27C-RH | 373..1636 | 17..1280 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:09 Download gff for
BS10694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6923906..6924400 | 17..511 | 100 | -> | Plus |
2L | 6924685..6925453 | 512..1280 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:36 Download gff for
BS10694.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6923906..6924400 | 17..511 | 100 | -> | Plus |
arm_2L | 6924685..6925453 | 512..1280 | 100 | | Plus |
BS10694.pep Sequence
Translation from 16 to 1281
> BS10694.pep
MEEDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGF
GFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFL
GGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSV
EHVTNERYINLNGKQVEIKKAEPRDGSGGQNSNNSTVGGAYGKLGNECSH
WGPHHAPINMMQGQNGQMGGPPLNMPIGAPNMMPGYQGWGTSPQQQQYGY
GNSGPGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAP
SGPSGGGSWNSWNMPPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTT
GPVGGMPRTGPGNSASKSGSEYDYGGYGSGYDYDYSNYVKQEGASNYGAG
PRSAYGNDSSTQPPYATSQAV*
BS10694.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hrb27C-PE | 421 | CG10377-PE | 1..421 | 1..421 | 2342 | 100 | Plus |
Hrb27C-PD | 421 | CG10377-PD | 1..421 | 1..421 | 2342 | 100 | Plus |
Hrb27C-PH | 421 | CG10377-PH | 1..421 | 1..421 | 2342 | 100 | Plus |
Hrb27C-PG | 421 | CG10377-PG | 1..421 | 1..421 | 2342 | 100 | Plus |
Hrb27C-PF | 421 | CG10377-PF | 1..421 | 1..421 | 2342 | 100 | Plus |