Clone BS10702 Report

Search the DGRC for BS10702

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG30440-RA
Protein status:BS10702.pep: full length peptide match
Sequenced Size:3206

Clone Sequence Records

BS10702.3prime Sequence

882 bp (769 high quality bases) assembled on 2006-04-19

> BS10702.3prime
ATGGTCTAGAAAGCTTTTAATTGTTTACAGTCTTTCTACTTAAGATGTAT
TTGCTTTTAATAAAGACTTGATGACTACTTGATCGGTTCCATAAAAGTTT
CGGTTGTCCAGTCTTCTGCATTAGTATCGGGTTAATTGTTTCATCTTCAT
CAATGTCGGAACAATCAGAGCTCCAACTGTTTTTTTCGTGTTGATCCTGA
ACAGATGGACCATTTACAATATTTTGATCTGATAAGCACGTTTTCTCGCT
TCTGATATTCGTATTCCGGTTGGAATCATTAAGAGGCAATTCAAAGCATT
CCGTGCGCCTCAATGAACAGTGGGTAATGTTGGGGGCTTCACAAGAACTT
TTTTGCCATAGGCTTTGATGCCGTATGTTGTACCTCGCTATTTGATCGCC
TTTGAGCTTTTCGAGTTGGTTAAATAGCACCCTTTTAATCTCGGCAACCC
ACATTTCTTTTACACCGATTGTCGATGCTTGCAACGTATAAACTTCCTGG
CGCCCTTTGAGCCAAACTTCAAATCGTTTTGCATCGCCGCTTACGGACTC
TGTTAAGCCAATTTGAGACATCTTTACATCGCTTTTAAATTGATAACTGC
TTTTGTTATATCCCGATTTTGATGTTTGCTTACAAAGCAGCAAAGACTTT
TGATATAAAAAGATATGCCGCCGTTTTGGCTTCATTCGAAGACGAATGTC
CTTTTTAGACTCTATCCACACCTGGAATGAGTCTTGCATCAAAAGTTCAC
CCTGTTTCGCTAAATCACCCGAAAACCCTGTTATTGAAATTTGGTGCATC
GAATCGTTTACGCACTTCAAAACGATTAACATACAGTCCAGTGCATTTTT
AAGTTCATTTCTGCAGCTATCGTTGTCAGTGA

BS10702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-PA 3174 CG30440-RA 2309..3174 882..17 4330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-RA 3443 CG30440-RA 2564..3431 882..15 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5474665..5475110 128..573 2230 100 Plus
2R 25286936 2R 5483843..5484041 572..770 995 100 Plus
2R 25286936 2R 5468331..5468444 15..128 570 100 Plus
2R 25286936 2R 5484107..5484220 769..882 570 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:19:01 has no hits.

BS10702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:23 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-PA 2310..3174 17..881 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:52 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-PA 2310..3174 17..881 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:15 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 2565..3443 3..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:40:46 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 2565..3443 3..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:40:46 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5468318..5468443 2..127 96 <- Plus
2R 5474665..5475108 128..571 100 <- Plus
2R 5483843..5484040 572..769 100 <- Plus
2R 5484108..5484219 770..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:15 Download gff for BS10702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1355823..1355948 2..127 96 <- Plus
arm_2R 1362170..1362613 128..571 100 <- Plus
arm_2R 1371348..1371545 572..769 100 <- Plus
arm_2R 1371613..1371724 770..881 100   Plus

BS10702.5prime Sequence

904 bp (859 high quality bases) assembled on 2006-04-19

> BS10702.5prime
GAAGTTATCAGTCGACATGTCTGCTCCCAAGATGCAAATACACCCCACAA
AGATGGAAGAAGATTCAGATACCCGTAACAGTACCTATGTACCCAAAATG
GAACTTCTTATGACCCATTATATACACGAAGGCAAGAAAGCTATTATGTA
CAGGTCGAGCGAGCCACAGATCGCTGCGCGTCGTAATAAAAAGACTCGTT
TTGTAGGAAACCGCCGACAACTAAGAAATCTTTCTCAACCCGAGAATAGC
CATAAAACCAGTCGAAGTCTCTGCCCAGATACCGCTAAGACTGAACCAAA
AGTTTATTCTTTGCGATTTGTCTTGAACAAAAGTGAAGACAAGGACTATA
TGTCAAGGCTCAAGGCGCAGAACGATTTCTCACAATCCTCTTGCCTTTGC
AACAATCTAAGCCATGCCAACACAGAGGCTGGTGCTTATCAAAATGATGG
TATCTTAAAAGGCCAGCGTGACCATTCGGATTTTTTGACTGCGGCTGGCG
GAATTCAATCGCGAGCAGATCGCATCGCACGCATTGAGACCTGCGGAATT
AGAACCACCCATCTACAACCAGAGACCCAAATTCTTAAGCCGGTAACGGA
ACCTAACGAAACTCGCTTCGATCAACATTCTCCAGACTGGCTATTTAAAA
ACTCAAGAATTGGAGACGTCAGTAACAGCAGTAAATTAAGCGCTTGTAAC
TCCGAGTTGCCTCCCGAAGAATATAAGGGGAGAACTCTATACCATGACAC
AAAGTTTGATTGTGCGTATATAAAAAATCGTCGACCGCTGATAACCACTG
AGAGCAAGATGTCCATTACAGAAGCAGAACATCCCCAGACCAAATATACC
GATATAAAGTACGACTACAAAAACTTGTTCGATTTCCCAAGGCTTACATC
AGAA

BS10702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-PA 3174 CG30440-RA 1..856 17..872 4280 100 Plus
CG30440-PA 3174 CG30440-RA 853..887 870..904 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-RA 3443 CG30440-RA 256..1142 17..904 4415 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5494720..5495606 904..17 4390 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 05:10:55 has no hits.

BS10702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:23 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-PA 1..885 17..902 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:53 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-PA 1..885 17..902 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:49:48 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 256..1142 17..904 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:27:18 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 256..1142 17..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:27:18 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5494720..5495606 17..904 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:49:48 Download gff for BS10702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1382225..1383111 17..904 99   Minus

BS10702.complete Sequence

3206 bp assembled on 2008-08-14

GenBank Submission: FJ636725

> BS10702.complete
GAAGTTATCAGTCGACATGTCTGCTCCCAAGATGCAAATACACCCCACAA
AGATGGAAGAAGATTCAGATACCCGTAACAGTACCTATGTACCCAAAATG
GAACTTCTTATGACCCATTATATACACGAAGGCAAGAAAGCTATTATGTA
CAGGTCGAGCGAGCCACAGATCGCTGCGCGTCGTAATAAAAAGACTCGTT
TTGTAGGAAACCGCCGACAACTAAGAAATCTTTCTCAACCCGAGAATAGC
CATAAAACCAGTCGAAGTCTCTGCCCAGATACCGCTAAGACTGAACCAAA
AGTTTATTCTTTGCGATTTGTCTTGAACAAAAGTGAAGACAAGGACTATA
TGTCAAGGCTCAAGGCGCAGAACGATTTCTCACAATCCTCTTGCCTTTGC
AACAATCTAAGCCATGCCAACACAGAGGCTGGTGCTTATCAAAATGATGG
TATCTTAAAAGGCCAGCGTGACCATTCGGATTTTTTGACTGCGGCTGGCG
GAATTCAATCGCGAGCAGATCGCATCGCACGCATTGAGACCTGCGGAATT
AGAACCACCCATCTACAACCAGAGACCCAAATTCTTAAGCCGGTAACGGA
ACCTAACGAAACTCGCTTCGATCAACATTCTCCAGACTGGCTATTTAAAA
ACTCAAGAATTGGAGACGTCAGTAACAGCAGTAAATTAAGCGCTTGTAAC
TCCGAGTTGCCTCCCGAAGAATATAAGGGGAGAACTCTATACCATGACAC
AAAGTTTGATTGTGCGTATATAAAAAATCGTCGACCGCTGATAACCACTG
AGAGCAAGATGTCCATTACAGAAGCAGAACATCCCCAGACCAAATATACC
GATATAAAGTACGACTACAAAACTTGTTCGATTTCCCAAGGCTTACATCA
GAACAAAGCATTTCTTAATAAAGTTCCTCCTAGCAAGCAAAGCAAACCTT
TCCACAGCGTAGATTATGATTATTACGAAAATATTCAAAAACTGCATCTG
AGCAAGGAATCTGAAAGACAAATAAGGGACAATGGGGACCCAAACGATTT
GCAGAACTTTTTAAAAAAGAATTTAATTAAGGCTACAACCAATGAATTGC
TTAAAGCTGCCGCGCAAAGCACAAAAAAGTGTAACATTGACTTAGAGCGC
AAGTTAAATGATCTGAATATAAAAGAAGAGGATCACACTTCCAATGACAG
CGGAAACTCATACAAGAACGATCCCTATCTAGTATCTATGAGCAAAATTA
ATTCTTGTAAATTTATCAGATCATATAATAGAGATTGTGAAACTATTTTT
CCCACTGGTGACCACAGTGACCTAAATGAATTTAGAAAGTCTTTTATGCC
ACAATCCGTTGATTTATTATCAAGCGCTTCTGTTTCGTTGTCTAGTTGCG
ATGGGTCTTGCCTAAACAAAGATTCTATTTGCGGTTCAGAAGAAGATTGC
TGCGAATGTAATGAATACCAATGTATCGCAACTCCGCCAAACGAACTTTC
CAAGGATTGCCTAAATGCAGTTGAAGAAGGTGTTTTTTGTAACACGGAGT
ATGATGACTTTCATGAAAACTTAACATCAAGCTGTTGCTGCAGCGGGTCT
TTTTGTGATGACGATGGTTGTTCATACTTGGATGAAGGTTTAAGCGTTGA
CATAAAATCCAAAAACGTACAAAGCCTGCACGAGAGCGGAACAGATGAAA
AACTTTCACGGAAAACCATTCTTCTGGCAAGGACTGAGGATACAAATGAT
GTAACACAAGGAATCAGCGATGGCACCACTTACTTCACTGGCTCTTTAAA
TATAACACATCTTCCAAAATCCAATGAAATATTTAAAAAACCGCAGGACC
CAGAAATGCAACGACACAGACGTGGTCATATTTTAAAGGAACTTTTTGAA
ACGGAGAAAATCTACGTTAATGAAATAGCGTCAATCTTAAAGGGCTACTA
TGATCGCTTGAAATCGGATGAAAGTGCTCCTGCCAGTCTGCAAGGTAAAG
CGAATGTGCTGTTCGGAAACCTTAATGAGATCTACTCATTCCATAATGAT
GTTTTTCTTAAGGATCTTGAAAACTGTATATCCGTCACTGAACGCGTTGC
ATTATGCTTTGTTAAAAGGCGTGACAAATTTTATCAATTATACTCATTTT
ATTGTCAAAATATACAACGCTCAGAGAAATTACGTGAAACCTTAGTGGAT
ACTCATATGTTCTTCAAAGAATGTCAAATAGGACTTGGTCATAAACTTCC
TCTGGGTGCATATTTGCTTAAGCCAGTTCAAAGAATTACAAAGTACCAAC
TTCTTTTAAAGGACTTGCTGCTCTTCACTGACAACGATAGCTGCAGAAAT
GAACTTAAAAATGCACTGGACTGTATGTTAATCGTTTTGAAGTGCGTAAA
CGATTCGATGCACCAAATTTCAATAACAGGGTTTTCGGGTGATTTAGCGA
AACAGGGTGAACTTTTGATGCAAGACTCATTCCAGGTGTGGATAGAGTCT
AAAAAGGACATTCGTCTTCGAATGAAGCCAAAACGGCGGCATATCTTTTT
ATATCAAAAGTCTTTGCTGCTTTGTAAGCAAACATCAAAATCGGGATATA
ACAAAAGCAGTTATCAATTTAAAAGCGATGTAAAGATGTCTCAAATTGGC
TTAACAGAGTCCGTAAGCGGCGATGCAAAACGATTTGAAGTTTGGCTCAA
AGGGCGCCAGGAAGTTTATACGTTGCAAGCATCGACAATCGGTGTAAAAG
AAATGTGGGTTGCCGAGATTAAAAGGGTGCTATTTAACCAACTCGAAAAG
CTCAAAGGCGATCAAATAGCGAGGTACAACATACGGCATCAAAGCCTATG
GCAAAAAAGTTCTTGTGAAGCCCCCAACATTACCCACTGTTCATTGAGGC
GCACGGAATGCTTTGAATTGCCTCTTAATGATTCCAACCGGAATACGAAT
ATCAGAAGCGAGAAAACGTGCTTATCAGATCAAAATATTGTAAATGGTCC
ATCTGTTCAGGATCAACACGAAAAAAACAGTTGGAGCTCTGATTGTTCCG
ACATTGATGAAGATGAAACAATTAACCCGATACTAATGCAGAAGACTGGA
CAACCGAAACTTTTATGGAACCGATCAAGTAGTCATCAAGTCTTTATTAA
AAGCAAATACATCTTAAGTAGAAAGACTGTAAACAATTAAAAGCTTTCTA
GACCAT

BS10702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-RA 3174 CG30440-PA 1..3174 17..3190 15870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-RA 3443 CG30440-RA 256..3431 17..3192 15880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5493891..5495606 1732..17 8580 100 Minus
2R 25286936 2R 5474665..5475110 3079..2634 2230 100 Minus
2R 25286936 2R 5484107..5484426 2438..2119 1600 100 Minus
2R 25286936 2R 5483843..5484041 2635..2437 995 100 Minus
2R 25286936 2R 5484477..5484655 2119..1941 895 100 Minus
2R 25286936 2R 5491999..5492114 1847..1732 580 100 Minus
2R 25286936 2R 5468331..5468444 3192..3079 570 100 Minus
2R 25286936 2R 5485870..5485968 1943..1845 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:33:25 has no hits.

BS10702.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:51:16 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 231..3419 17..3205 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:54 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 256..3427 17..3188 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:20:02 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 231..3402 17..3188 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:45 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
CG30440-RA 256..3427 17..3188 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:45 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5485871..5485966 1847..1942 100 <- Minus
2R 5492000..5492113 1733..1846 100 <- Minus
2R 5468335..5468443 3080..3188 100 <- Minus
2R 5474665..5475108 2636..3079 100 <- Minus
2R 5483843..5484040 2438..2635 100 <- Minus
2R 5484108..5484425 2120..2437 100 <- Minus
2R 5484477..5484653 1943..2119 100 <- Minus
2R 5493891..5495606 17..1732 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:54 Download gff for BS10702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1373376..1373471 1847..1942 100 <- Minus
arm_2R 1379505..1379618 1733..1846 100 <- Minus
arm_2R 1371613..1371930 2120..2437 100 <- Minus
arm_2R 1355840..1355948 3080..3188 100 <- Minus
arm_2R 1362170..1362613 2636..3079 100 <- Minus
arm_2R 1371348..1371545 2438..2635 100 <- Minus
arm_2R 1371982..1372158 1943..2119 100 <- Minus
arm_2R 1381396..1383111 17..1732 100   Minus

BS10702.pep Sequence

Translation from 16 to 3189

> BS10702.pep
MSAPKMQIHPTKMEEDSDTRNSTYVPKMELLMTHYIHEGKKAIMYRSSEP
QIAARRNKKTRFVGNRRQLRNLSQPENSHKTSRSLCPDTAKTEPKVYSLR
FVLNKSEDKDYMSRLKAQNDFSQSSCLCNNLSHANTEAGAYQNDGILKGQ
RDHSDFLTAAGGIQSRADRIARIETCGIRTTHLQPETQILKPVTEPNETR
FDQHSPDWLFKNSRIGDVSNSSKLSACNSELPPEEYKGRTLYHDTKFDCA
YIKNRRPLITTESKMSITEAEHPQTKYTDIKYDYKTCSISQGLHQNKAFL
NKVPPSKQSKPFHSVDYDYYENIQKLHLSKESERQIRDNGDPNDLQNFLK
KNLIKATTNELLKAAAQSTKKCNIDLERKLNDLNIKEEDHTSNDSGNSYK
NDPYLVSMSKINSCKFIRSYNRDCETIFPTGDHSDLNEFRKSFMPQSVDL
LSSASVSLSSCDGSCLNKDSICGSEEDCCECNEYQCIATPPNELSKDCLN
AVEEGVFCNTEYDDFHENLTSSCCCSGSFCDDDGCSYLDEGLSVDIKSKN
VQSLHESGTDEKLSRKTILLARTEDTNDVTQGISDGTTYFTGSLNITHLP
KSNEIFKKPQDPEMQRHRRGHILKELFETEKIYVNEIASILKGYYDRLKS
DESAPASLQGKANVLFGNLNEIYSFHNDVFLKDLENCISVTERVALCFVK
RRDKFYQLYSFYCQNIQRSEKLRETLVDTHMFFKECQIGLGHKLPLGAYL
LKPVQRITKYQLLLKDLLLFTDNDSCRNELKNALDCMLIVLKCVNDSMHQ
ISITGFSGDLAKQGELLMQDSFQVWIESKKDIRLRMKPKRRHIFLYQKSL
LLCKQTSKSGYNKSSYQFKSDVKMSQIGLTESVSGDAKRFEVWLKGRQEV
YTLQASTIGVKEMWVAEIKRVLFNQLEKLKGDQIARYNIRHQSLWQKSSC
EAPNITHCSLRRTECFELPLNDSNRNTNIRSEKTCLSDQNIVNGPSVQDQ
HEKNSWSSDCSDIDEDETINPILMQKTGQPKLLWNRSSSHQVFIKSKYIL
SRKTVNN*

BS10702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30440-PA 1057 CG30440-PA 1..1057 1..1057 5584 100 Plus
trio-PC 2263 CG18214-PC 1240..1580 584..922 516 36.5 Plus
trio-PA 2263 CG18214-PA 1240..1580 584..922 516 36.5 Plus
CG33275-PC 872 CG33275-PC 219..636 525..935 392 29.2 Plus
CG33275-PB 1428 CG33275-PB 775..1192 525..935 392 29.2 Plus
trio-PC 2263 CG18214-PC 1941..2211 618..892 326 30.9 Plus
trio-PA 2263 CG18214-PA 1941..2211 618..892 326 30.9 Plus