Clone Sequence Records
BS10704.3prime Sequence
921 bp (785 high quality bases) assembled on 2006-04-19
> BS10704.3prime
ATGGTCTAGAAAGCTTTCAGTTGTTGCGCTCCAGTCGCAGGCAAATGCTG
CTACCGGCGCCATTATCATCATCGTCATCCTCATCTCGCCCATCGGGCCC
CGTCGCATAGCAGCCATCCTCGCGCCACGCACACCCATGTGTCCAGGCCA
TCGGTTCCTGGAACTTGTCCTCGTGCAGCGGATTGAGGTAGGCATACAGG
CGGGGATGGTCCACGTACGCGGAGCACGCGTAGCACCACACAGACAGGTC
AGCCGTGCTCATCGCCAGCGGATGCTGCTCCTCCACTGAATGCTGCTCCA
TGTGGGCGTTCACATAGCGACCGCAGGCCACATGCCTGCAGCTCAGGCAC
ACCCAGTTCTCCCCCGTCGATCCGCAAACGCTGCACTCCGCTCCGCTGTC
TAGTGATCGGGGCGCCTCCTCCGGACGTAGGAGCCTCAAGTGCGGACACG
TCTTGAGCGGATACACGGCGAACATCTCACTCTGCTCGAGGGCCTCCTTG
TTCTCCGCCAAGTAGTCGCTGAGCGTTTTTACCTTGACTTTGGGCTTGCT
CCCGCTGGGCCGCTCATCGCCGCAGTCGGGACGATCGCCGGCGAGTCCGC
CCGCCGCAGCCGTAGCATCGTCATTTGAGATATTCAAGTGTCGCAAGGAG
GCGGTAAGAAAATCCTCGTTGTTGTTCTCGCCCACAACGGGATCCCGCGG
CAGCCGCCGTCCGACGAACTCCAGCGAGCGCCAGTGGTTGCGCTGCACCT
GCAGGCACTGCTGCAGCGATTCCACACAGCTCTGGAAGGCCACCGTTGGT
GGCTTCTGCAGCGCCGTGGCTCCCAGCTGGGGCGTCGGCACGGGATCACC
CAGCAGCGTCTTGGTGCACATGGTCATCGCGTACGAAATGGAGTTCACAT
TGTAGCCACCTTCCAGGCAAA
BS10704.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6170-PA | 3387 | HDAC6-RA | 2483..3387 | 921..17 | 4525 | 100 | Minus |
| CG6170-PC | 3417 | HDAC6-RC | 2513..3417 | 921..17 | 4525 | 100 | Minus |
| CG6170-PB | 3408 | HDAC6-RB | 2504..3408 | 921..17 | 4525 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:17:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RE | 3817 | CG6170-RE | 2568..3472 | 921..17 | 4525 | 100 | Minus |
| HDAC6-RG | 4483 | CG6170-RG | 3234..4138 | 921..17 | 4525 | 100 | Minus |
| HDAC6-RB | 3848 | CG6170-RB | 2599..3503 | 921..17 | 4525 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:17:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15338277..15338705 | 921..493 | 2145 | 100 | Minus |
| X | 23542271 | X | 15339627..15340015 | 405..17 | 1945 | 100 | Minus |
| X | 23542271 | X | 15338835..15338924 | 495..406 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:17:45 has no hits.
BS10704.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:24 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-PB | 2507..3408 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:55 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6170-PB | 2507..3408 | 17..918 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:31:54 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RB | 2602..3508 | 11..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:49:08 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RB | 2602..3508 | 11..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:49:08 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15339627..15340020 | 11..405 | 99 | | Minus |
| X | 15338280..15338704 | 494..918 | 100 | -> | Minus |
| X | 15338837..15338924 | 406..493 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:31:54 Download gff for
BS10704.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15232313..15232737 | 494..918 | 100 | -> | Minus |
| arm_X | 15232870..15232957 | 406..493 | 100 | -> | Minus |
| arm_X | 15233660..15234053 | 11..405 | 99 | | Minus |
BS10704.5prime Sequence
951 bp (777 high quality bases) assembled on 2006-04-19
> BS10704.5prime
GAAGTTATCAGTCGACATGAGCCCGCCCATCGTCACGCGACGGAGTGCGC
AGCAGGCAAAGATTCAGACACGGGCAATGGCCAGTAAATCGAAGACGGGC
ACGACAGGGGCGGCGACGGCGGCCGGCGGCACCGGCAGCAGCAGCGGCAG
TATCAGCGGCGGATTTAATGCCGCCGATCCGCGAAAGTCGAACAAACCGA
ACGCAGCGCTCTTGGAGGCGAAACGTCGAGCTCGGAACAACATGCTCAAG
AATCAGGGCTGCGGATCGCAGGAGAGCGTCACGGATATATTCCAGAATGC
TGTCAACAGCAAGAGTCTGGTGCGGAAACCAACGGCACTGATCTACGATG
AGTCCATGAGCCAGCACTGTTGCCTGTGGGACAAGGAGCACTACGAGTGT
CCCGAGCGCTTCACACGAGTCCTGGAACGCTGTCGCGAACTAAATCTGAC
GGAGCGCTGCCTGGAGTTGCCCTCGAGATCGGCGACCAAGGATGAAATTC
TGCGCCTGCACACAGAGGAGCACTTCGAGCGGCTGAAGGAGACGTCCGGG
ATTCGCGATGACGAGCGCATGGAGGAGCTGAGCTCCCGCTACGATTCAAT
TTACATTCATCCGTCCACATTCGAGCTCTCCCTGCTGGCCAGCGGCTCCA
CCATCGAATTGGTGGACCATCTGGTCGCCGGAAAGGCGCAGAATGGCATG
GCCATCATCCGGCCACCGGGTCACCATGCGATGAAGGCCGAGTACAACGG
TTATTGCTTCTTCAACAACGTGGCACTGGCCACCCAGCACGCCCTCGATG
TTCACAAGCTGCAGCGCATCCTGATCATCGACTACGATGTGCATCATGGG
CAGGAAACCCAGCGGTTCTTCTACNACGATCCCCAGGGTGGGTTTACTTC
TCCATCCATCGCTTCGAGCACGGAAGCTTCTGGCCGCATCTGCACGAGTC
G
BS10704.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6170-PA | 3387 | HDAC6-RA | 1..867 | 17..883 | 4291 | 99.7 | Plus |
| CG6170-PC | 3417 | HDAC6-RC | 33..897 | 19..883 | 4281 | 99.7 | Plus |
| CG6170-PB | 3408 | HDAC6-RB | 24..888 | 19..883 | 4281 | 99.7 | Plus |
| CG6170-PA | 3387 | HDAC6-RA | 873..933 | 891..951 | 305 | 100 | Plus |
| CG6170-PC | 3417 | HDAC6-RC | 903..963 | 891..951 | 305 | 100 | Plus |
| CG6170-PB | 3408 | HDAC6-RB | 894..954 | 891..951 | 305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RG | 4483 | CG6170-RG | 750..1684 | 15..951 | 4609 | 99.6 | Plus |
| HDAC6-RA | 4483 | CG6170-RA | 750..1684 | 15..951 | 4609 | 99.6 | Plus |
| HDAC6-RF | 3272 | CG6170-RF | 109..1039 | 19..951 | 4589 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15334989..15335269 | 19..299 | 1405 | 100 | Plus |
| X | 23542271 | X | 15336289..15336559 | 613..883 | 1329 | 99.3 | Plus |
| X | 23542271 | X | 15335545..15335729 | 429..613 | 925 | 100 | Plus |
| X | 23542271 | X | 15335350..15335480 | 299..429 | 655 | 100 | Plus |
| X | 23542271 | X | 15336618..15336678 | 891..951 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:56:51 has no hits.
BS10704.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:25 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-PA | 1..933 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:10:56 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6170-PA | 1..933 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:18:18 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1684 | 9..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:24 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 745..1684 | 9..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:24 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15336290..15336561 | 614..886 | 98 | -> | Plus |
| X | 15336615..15336678 | 887..951 | 98 | | Plus |
| X | 15334984..15335268 | 12..298 | 99 | -> | Plus |
| X | 15335350..15335480 | 299..429 | 100 | -> | Plus |
| X | 15335546..15335729 | 430..613 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:18:18 Download gff for
BS10704.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15229017..15229301 | 12..298 | 99 | -> | Plus |
| arm_X | 15229383..15229513 | 299..429 | 100 | -> | Plus |
| arm_X | 15229579..15229762 | 430..613 | 100 | -> | Plus |
| arm_X | 15230323..15230594 | 614..886 | 98 | -> | Plus |
| arm_X | 15230648..15230711 | 887..951 | 98 | | Plus |
BS10704.complete Sequence
3419 bp assembled on 2009-12-07
GenBank Submission: KX801354
> BS10704.complete
GAAGTTATCAGTCGACATGAGCCCGCCCATCGTCACGCGACGGAGTGCGC
AGCAGGCAAAGATTCAGACACGGGCAATGGCCAGTAAATCGAAGACGGGC
ACGACAGGGGCGGCGACGGCGGCCGGCGGCACCGGCAGCAGCAGCGGCAG
TATCAGCGGCGGATTTAATGCCGCCGATCCGCGAAAGTCGAACAAACCGA
ACGCAGCGCTCTTGGAGGCGAAACGTCGAGCTCGGAACAACATGCTCAAG
AATCAGGGCTGCGGATCGCAGGAGAGCGTCACGGATATATTCCAGAATGC
TGTCAACAGCAAGAGTCTGGTGCGGAAACCAACGGCACTGATCTACGATG
AGTCCATGAGCCAGCACTGTTGCCTGTGGGACAAGGAGCACTACGAGTGT
CCCGAGCGCTTCACACGAGTCCTGGAACGCTGTCGCGAACTAAATCTGAC
GGAGCGCTGCCTGGAGTTGCCCTCGAGATCGGCGACCAAGGATGAAATTC
TGCGCCTGCACACAGAGGAGCACTTCGAGCGGCTGAAGGAGACGTCCGGG
ATTCGCGATGACGAGCGCATGGAGGAGCTGAGCTCCCGCTACGATTCAAT
TTACATTCATCCGTCCACATTCGAGCTCTCCCTGCTGGCCAGCGGCTCCA
CCATCGAATTGGTGGACCATCTGGTCGCCGGAAAGGCGCAGAATGGCATG
GCCATCATCCGGCCACCGGGTCACCATGCGATGAAGGCCGAGTACAACGG
TTATTGCTTCTTCAACAACGTGGCACTGGCCACCCAGCACGCCCTCGATG
TTCACAAGCTGCAGCGCATCCTGATCATCGACTACGATGTGCATCATGGG
CAGGGAACCCAGCGGTTCTTCTACAACGATCCCAGGGTGGTTTACTTCTC
CATCCATCGCTTCGAGCACGGAAGCTTCTGGCCGCATCTGCACGAGTCGG
ATTACCACGCCATTGGATCGGGAGCGGGCACGGGATACAACTTCAATGTG
CCGTTGAATGCGACGGGTATGACCAATGGCGATTACCTGGCCATTTTCCA
GCAGCTGCTGCTGCCGGTGGCCCTGGAATTCCAGCCGGAGCTGATCATCG
TTTCGGCTGGCTATGATGCGGCGCTGGGCTGTCCGGAGGGTGAGATGGAG
GTGACGCCGGCCTGCTATCCGCACCTGCTGAATCCGCTGCTGCGACTGGC
CGATGCCCGGGTGGCCGTCGTTCTGGAGGGCGGCTACTGCCTGGACTCGC
TGGCCGAGGGTGCGGCCCTAACCCTGCGCTCCCTGCTCGGCGATCCTTGT
CCGCCGCTGGTGGAGACAGTGCCACTGCCGCGTGCGGAACTCGCCCAGGC
CCTGCTCAGCTGCATTGCCGTGCACCGACCCCACTGGCGATGTCTGCAGC
TCCAGCAGACCTACGATTGCGTCGAATTGCAGGATCGGGATAAGGAAGAG
GATCTGCACACGGTACTGCGCCATTGGATTGGTGGACCACCGCCTATGGA
TCGTTACCCTACGCGCGATACGGCCATTCCGCTGCCGCCGGAAAAGCTGA
CCAGCAATGCCGCTCGTCTGCAGGTGCTGCGCGCGGAGACGAAGCTATCG
GTGCCGTCGTTTAAGGTGTGTTATGCCTACGATGCCCAAATGCTTCTGCA
CTGCAATCTCAATGATACGGGGCATCCGGAGCAGCCGTCGCGCATCCAGC
ACATCCACAAGATGCACGACGACTACGGTCTGCTGAAGCAGATGAAGCAA
CTGTCCCCCAGGGCGGCCACCACAGACGAGGTGTGCCTGGCCCACACTCG
CGCCCATGTGAATACAGTGCGTCGATTGCTGGGCCGCGAGCCGAAGGAAC
TGCATGACGCTGCTGGGATCTACAACTCGGTGTATCTGCATCCGCGCACC
TTCGATTGCGCCACCCTGGCCGCCGGTTTAGTGCTGCAGGCGGTGGACAG
TGTGCTGCGTGGCGAGTCCCGCAGCGGCATCTGCAACGTCCGTCCGCCGG
GCCATCATGCCGAGCAGGATCATCCGCACGGCTTCTGCATTTTCAACAAT
GTGGCCATTGCGGCGCAGTATGCCATTCGGGATTTCGGTCTGGAGCGTGT
GCTGATCGTCGACTGGGACGTCCATCACGGCAATGGGACGCAGCACATTT
TCGAGTCCAATCCCAAGGTGCTCTACATCAGCTTACATCGCTACGAGCAC
GGCTCCTTCTTCCCGAAGGGACCCGATGGCAATTTCGATGTGGTGGGCAA
GGGAGCCGGCAGGGGCTTCAATGTGAACATACCCTGGAACAAGAAGGGCA
TGGGTGACCTGGAGTACGCACTGGCCTTCCAGCAGCTGATCATGCCCATT
GCGTACGAGTTCAATCCGCAGCTGGTGTTGGTATCCGCCGGATTCGATGC
TGCCATCGGCGATCCCTTGGGCGGATGCAAGGTGACGGCCGAGGGCTACG
GCATGCTCACCCACTGGCTGTCGGCTTTGGCCAGCGGCCGGATAATCGTT
TGCCTGGAAGGTGGCTACAATGTGAACTCCATTTCGTACGCGATGACCAT
GTGCACCAAGACGCTGCTGGGTGATCCCGTGCCGACGCCCCAGCTGGGAG
CCACGGCGCTGCAGAAGCCACCAACGGTGGCCTTCCAGAGCTGTGTGGAA
TCGCTGCAGCAGTGCCTGCAGGTGCAGCGCAACCACTGGCGCTCGCTGGA
GTTCGTCGGACGGCGGCTGCCGCGGGATCCCGTTGTGGGCGAGAACAACA
ACGAGGATTTTCTTACCGCCTCCTTGCGACACTTGAATATCTCAAATGAC
GATGCTACGGCTGCGGCGGGCGGACTCGCCGGCGATCGTCCCGACTGCGG
CGATGAGCGGCCCAGCGGGAGCAAGCCCAAAGTCAAGGTAAAAACGCTCA
GCGACTACTTGGCGGAGAACAAGGAGGCCCTCGAGCAGAGTGAGATGTTC
GCCGTGTATCCGCTCAAGACGTGTCCGCACTTGAGGCTCCTACGTCCGGA
GGAGGCGCCCCGATCACTAGACAGCGGAGCGGAGTGCAGCGTTTGCGGAT
CGACGGGGGAGAACTGGGTGTGCCTGAGCTGCAGGCATGTGGCCTGCGGT
CGCTATGTGAACGCCCACATGGAGCAGCATTCAGTGGAGGAGCAGCATCC
GCTGGCGATGAGCACGGCTGACCTGTCTGTGTGGTGCTACGCGTGCTCCG
CGTACGTGGACCATCCCCGCCTGTATGCCTACCTCAATCCGCTGCACGAG
GACAAGTTCCAGGAACCGATGGCCTGGACACATGGGTGTGCGTGGCGCGA
GGATGGCTGCTATGCGACGGGGCCCGATGGGCGAGATGAGGATGACGATG
ATGATAATGGCGCCGGTAGCAGCATTTGCCTGCGACTGGAGCGCAACAAC
TGAAAGCTTTCTAGACCAT
BS10704.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RG | 3540 | CG6170-PG | 1..3387 | 17..3403 | 16935 | 100 | Plus |
| HDAC6-RA | 3387 | CG6170-PA | 1..3387 | 17..3403 | 16935 | 100 | Plus |
| HDAC6-RB | 3408 | CG6170-PB | 24..3408 | 19..3403 | 16925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-RG | 4483 | CG6170-RG | 750..4138 | 15..3403 | 16945 | 100 | Plus |
| HDAC6-RA | 4483 | CG6170-RA | 750..4138 | 15..3403 | 16945 | 100 | Plus |
| HDAC6-RE | 3817 | CG6170-RE | 88..3472 | 19..3403 | 16925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15336612..15338022 | 883..2293 | 7055 | 100 | Plus |
| X | 23542271 | X | 15338070..15338705 | 2292..2927 | 3180 | 100 | Plus |
| X | 23542271 | X | 15339627..15340015 | 3015..3403 | 1945 | 100 | Plus |
| X | 23542271 | X | 15334989..15335269 | 19..299 | 1405 | 100 | Plus |
| X | 23542271 | X | 15336289..15336562 | 613..886 | 1370 | 100 | Plus |
| X | 23542271 | X | 15335545..15335729 | 429..613 | 925 | 100 | Plus |
| X | 23542271 | X | 15335350..15335480 | 299..429 | 655 | 100 | Plus |
| X | 23542271 | X | 15338835..15338924 | 2925..3014 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:41 has no hits.
BS10704.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:32 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 1107..4492 | 17..3402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:50 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 752..4137 | 17..3402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:45 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 1107..4492 | 17..3402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:31 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HDAC6-RA | 752..4137 | 17..3402 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:31 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15334988..15335268 | 17..298 | 99 | -> | Plus |
| X | 15335350..15335480 | 299..429 | 100 | -> | Plus |
| X | 15335546..15335729 | 430..613 | 100 | -> | Plus |
| X | 15336290..15336561 | 614..885 | 100 | -> | Plus |
| X | 15336615..15338022 | 886..2293 | 100 | -> | Plus |
| X | 15338072..15338704 | 2294..2926 | 100 | -> | Plus |
| X | 15338837..15338924 | 2927..3014 | 100 | -> | Plus |
| X | 15339627..15340014 | 3015..3402 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:50 Download gff for
BS10704.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15229021..15229301 | 17..298 | 99 | -> | Plus |
| arm_X | 15229383..15229513 | 299..429 | 100 | -> | Plus |
| arm_X | 15229579..15229762 | 430..613 | 100 | -> | Plus |
| arm_X | 15230323..15230594 | 614..885 | 100 | -> | Plus |
| arm_X | 15230648..15232055 | 886..2293 | 100 | -> | Plus |
| arm_X | 15232105..15232737 | 2294..2926 | 100 | -> | Plus |
| arm_X | 15232870..15232957 | 2927..3014 | 100 | -> | Plus |
| arm_X | 15233660..15234047 | 3015..3402 | 100 | | Plus |
BS10704.pep Sequence
Translation from 16 to 3402
> BS10704.pep
MSPPIVTRRSAQQAKIQTRAMASKSKTGTTGAATAAGGTGSSSGSISGGF
NAADPRKSNKPNAALLEAKRRARNNMLKNQGCGSQESVTDIFQNAVNSKS
LVRKPTALIYDESMSQHCCLWDKEHYECPERFTRVLERCRELNLTERCLE
LPSRSATKDEILRLHTEEHFERLKETSGIRDDERMEELSSRYDSIYIHPS
TFELSLLASGSTIELVDHLVAGKAQNGMAIIRPPGHHAMKAEYNGYCFFN
NVALATQHALDVHKLQRILIIDYDVHHGQGTQRFFYNDPRVVYFSIHRFE
HGSFWPHLHESDYHAIGSGAGTGYNFNVPLNATGMTNGDYLAIFQQLLLP
VALEFQPELIIVSAGYDAALGCPEGEMEVTPACYPHLLNPLLRLADARVA
VVLEGGYCLDSLAEGAALTLRSLLGDPCPPLVETVPLPRAELAQALLSCI
AVHRPHWRCLQLQQTYDCVELQDRDKEEDLHTVLRHWIGGPPPMDRYPTR
DTAIPLPPEKLTSNAARLQVLRAETKLSVPSFKVCYAYDAQMLLHCNLND
TGHPEQPSRIQHIHKMHDDYGLLKQMKQLSPRAATTDEVCLAHTRAHVNT
VRRLLGREPKELHDAAGIYNSVYLHPRTFDCATLAAGLVLQAVDSVLRGE
SRSGICNVRPPGHHAEQDHPHGFCIFNNVAIAAQYAIRDFGLERVLIVDW
DVHHGNGTQHIFESNPKVLYISLHRYEHGSFFPKGPDGNFDVVGKGAGRG
FNVNIPWNKKGMGDLEYALAFQQLIMPIAYEFNPQLVLVSAGFDAAIGDP
LGGCKVTAEGYGMLTHWLSALASGRIIVCLEGGYNVNSISYAMTMCTKTL
LGDPVPTPQLGATALQKPPTVAFQSCVESLQQCLQVQRNHWRSLEFVGRR
LPRDPVVGENNNEDFLTASLRHLNISNDDATAAAGGLAGDRPDCGDERPS
GSKPKVKVKTLSDYLAENKEALEQSEMFAVYPLKTCPHLRLLRPEEAPRS
LDSGAECSVCGSTGENWVCLSCRHVACGRYVNAHMEQHSVEEQHPLAMST
ADLSVWCYACSAYVDHPRLYAYLNPLHEDKFQEPMAWTHGCAWREDGCYA
TGPDGRDEDDDDDNGAGSSICLRLERNN*
BS10704.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HDAC6-PG | 1179 | CG6170-PG | 1..1128 | 1..1128 | 6054 | 100 | Plus |
| HDAC6-PA | 1128 | CG6170-PA | 1..1128 | 1..1128 | 6054 | 100 | Plus |
| HDAC6-PB | 1135 | CG6170-PB | 9..1135 | 2..1128 | 6049 | 100 | Plus |
| HDAC6-PC | 1138 | CG6170-PC | 12..1138 | 2..1128 | 6049 | 100 | Plus |
| HDAC6-PE | 1108 | CG6170-PE | 1..1108 | 21..1128 | 5958 | 100 | Plus |
