Clone BS10709 Report

Search the DGRC for BS10709

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:9
Vector:pDNR-Dual
Associated Gene/Transcriptl(3)05822-RA
Protein status:BS10709.pep: full length peptide match
Sequenced Size:1835

Clone Sequence Records

BS10709.3prime Sequence

831 bp (828 high quality bases) assembled on 2006-04-19

> BS10709.3prime
ATGGTCTAGAAAGCTTTTACAACGTAGGCAGATTGGCGGGCACCTGGTCC
AGGAAGTTGGCCGGAAACTGTCCCTGACGACCCGCCACCTCGCCGTACAG
CCAATCCTCGTTAATCCTATAAAGCACTGTAACCAATTCGTTCTCCTGCA
AGGCGAGATCTCCTTCGACTTCGCCCGGGAAGTGATACAAACAAAGCGCC
GTCGGCAGTTGCTGTTGTGACGGACTGGGTGACGGTGCTGCAGCACTAGC
GGTTGGAGCTGCAGCAGCGCCACCAGTGGCCCCCAATGGCACCTTGATGT
CCACGTAGTTAATTGGAAAAATGCCCTCACATCCGGAACGCGTGCGTCCG
CGCAACCACTCCGGCGTGGGATGGTCCAACAGATAGATTTTCTCGCCTTC
TCTAAAACTAAGATCGCCCGGCTCGATGCCATCGAAATCGTAAAGCGCAA
CGGCGTAAGGAACCACTTCCTCCTCCATGTAGCCCTGGCATCCGTTGCTG
AGCGCTAGCGCATCCACTTTCCCGTTGATCACGTCCAGCAGTGAGATTCC
TCCGCTAGATGCCGGCGGCGGCGGTGGTGGTGGTCCTTTGGGCATCGGCG
GCGATGGTGGTGTCTCCGATCCTGCGTAACCTGATGGTATGCTATAACCT
GGCGGCAAATGGCCCCCAATAAATGGCGGTGGTTTCGGAGCCTTTGGCTT
TTGCGATATCTTGGGCTTGATGATGGTGGGCATGGTAAGCGATTGAGTGG
GCGGCAACAGACTCTTGCCATTGCACAGCGGATTGTCCGAGCCGCGCGAC
TGCACTTGGTACGTCTGACGCACTGGGGCGG

BS10709.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7129-PA 1803 l(3)05822-RA 989..1803 831..17 4075 100 Minus
CG7129-PB 1803 l(3)05822-RB 989..1803 831..17 4075 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:47:23
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 1053..1867 831..17 4075 100 Minus
l(3)05822-RC 2603 CG7129-RC 1076..1890 831..17 4075 100 Minus
l(3)05822-RB 2634 CG7129-RB 1107..1921 831..17 4075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290079..18290510 400..831 2160 100 Plus
3R 32079331 3R 18289765..18290020 145..400 1280 100 Plus
3R 32079331 3R 18289579..18289709 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:47:22 has no hits.

BS10709.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:30 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PA 989..1803 17..831 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:03 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PB 989..1803 17..831 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 15:59:45 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 1107..1921 17..831 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:02 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 1107..1921 17..831 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:02 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18289579..18289707 17..145 100 <- Plus
3R 18289766..18290020 146..400 100 <- Plus
3R 18290080..18290510 401..831 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 15:59:45 Download gff for BS10709.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14115301..14115429 17..145 100 <- Plus
arm_3R 14115488..14115742 146..400 100 <- Plus
arm_3R 14115802..14116232 401..831 100   Plus

BS10709.5prime Sequence

867 bp (802 high quality bases) assembled on 2006-04-19

> BS10709.5prime
GAAGTTATCAGTCGACATGACCATTCCATCGAGACCGGCGCCCGCACCGC
CCGGATCACGTGGCCAGAGCGCAGCGGCTGGGGCAAATGCCAGCCTGGAA
CAGCTGCGTCTCCAGCTGCAGCAGCAGCACCTGCAGCAACAGCAAGGCGC
CGGCGGTGGACTCCAAAAGCTGACCATCAAGCTGCCGCCACCGCCCAAGG
GACCGCTGCAGTCGCAGCACAAACGTACCACCGTCAGCAACAATAACAAC
GGCAGCCTCTTCGACGAGCCAACGGGTGGCACGAGCATTACGCGGAAGTT
TCCACAGGCACGCTACACGCCGGCCACCAACTGGGACGACGATCCATTTG
GAGGCGGGAGCAACGGAAATGATCGCTTCAAGAAGATGCCACCGCCGCGA
CCGCCGCCGCCCAAGGTGCTGGTCAATGGGCAGAACATGACCAAGTCCAA
CTCCTCGATGGCATCGGCGGTCACTGGCGGCACGGGCAGACTCATGTCGA
ACATTTTCCATCGCAAGAAGTCGACGTCCACGGCATCCGCCGCTGCTTCC
AAGGCTGCAGCGGAAAATCGTGTCTACGGCCTGAGCAGCGGCAATGCCGG
TGCAACACCAAGTAACAACAGCAGCAGCAGTGCATCGTCGGCGGCCTTTA
GCAATGTGGATTGGAATGCAGCGTGGAACACGGCCACCACTACCACAACC
ACCACCTCGAGCAGCAGCCACAGCTCCCATTATGCCTCGCAGCAGACGGC
CGATGCGCAGCTCATCAGCTTCGATTCGCCCCCTTCGTCGCCAACCTTTA
CCCAGAAGTCCAATAGCGACTGCGTCAGCGTGGACAGCTTCAGTTCGGAC
AGCAACTTTAGTTCGCC

BS10709.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG7129-PA 1803 l(3)05822-RA 1..851 17..867 4255 100 Plus
CG7129-PB 1803 l(3)05822-RB 1..851 17..867 4255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 64..915 16..867 4260 100 Plus
l(3)05822-RC 2603 CG7129-RC 87..938 16..867 4260 100 Plus
l(3)05822-RB 2634 CG7129-RB 118..969 16..867 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290648..18291499 867..16 4260 100 Minus
Blast to na_te.dros performed 2015-02-13 08:46:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6887 94..265 183 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6885 114..287 174 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6900 113..254 173 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2484 99..256 172 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2502 99..256 163 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2471 113..267 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6923 63..253 149 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1582 91..144 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3311 75..145 132 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6939 99..210 128 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6962 13..266 120 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1066..1140 71..144 120 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7379..7447 101..170 113 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1062..1107 99..144 113 71.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6892 63..145 112 63.6 Plus

BS10709.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:32 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PA 1..851 17..867 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:05 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7129-PB 1..851 17..867 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:37:11 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 109..969 5..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:48:55 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 109..969 5..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:48:55 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18290648..18291509 5..867 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:37:11 Download gff for BS10709.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14116370..14117231 5..867 99   Minus

BS10709.complete Sequence

1835 bp assembled on 2010-05-10

GenBank Submission: KX800657

> BS10709.complete
GAAGTTATCAGTCGACATGACCATTCCATCGAGACCGGCGCCCGCACCGC
CCGGATCACGTGGCCAGAGCGCAGCGGCTGGGGCAAATGCCAGCCTGGAA
CAGCTGCGTCTCCAGCTGCAGCAGCAGCACCTGCAGCAACAGCAAGGCGC
CGGCGGTGGACTCCAAAAGCTGACCATCAAGCTGCCGCCACCGCCCAAGG
GACCGCTGCAGTCGCAGCACAAACGTACCACCGTCAGCAACAATAACAAC
GGCAGCCTCTTCGACGAGCCAACGGGTGGCACGAGCATTACGCGGAAGTT
TCCACAGGCACGCTACACGCCGGCCACCAACTGGGACGACGATCCATTTG
GAGGCGGGAGCAACGGAAATGATCGCTTCAAGAAGATGCCACCGCCGCGA
CCGCCGCCGCCCAAGGTGCTGGTCAATGGGCAGAACATGACCAAGTCCAA
CTCCTCGATGGCATCGGCGGTCACTGGCGGCACGGGCAGACTCATGTCGA
ACATTTTCCATCGCAAGAAGTCGACGTCCACGGCATCCGCCGCTGCTTCC
AAGGCTGCAGCGGAAAATCGTGTCTACGGCCTGAGCAGCGGCAATGCCGG
TGCAACACCAAGTAACAACAGCAGCAGCAGTGCATCGTCGGCGGCCTTTA
GCAATGTGGATTGGAATGCAGCGTGGAACACGGCCACCACTACCACAACC
ACCACCTCGAGCAGCAGCCACAGCTCCCATTATGCCTCGCAGCAGACGGC
CGATGCGCAGCTCATCAGCTTCGATTCGCCCCCTTCGTCGCCAACCTTTA
CCCAGAAGTCCAATAGCGACTGCGTCAGCGTGGACAGCTTCAGTTCGGAC
AGCAACTTTAGTTCGCCCAACAATGGCAGCGTTTCGCAGCCGGAGAGCGG
ATTCGAGGACGATTATCATCGATCACGACCCTCCACACAGAGTCCGCTGG
ATCCGTGGGAGGCGGTGGATAGCGTTGGACTCGGGGGAGTCGATAGCTTT
GGCTCCGCCCCAGTGCGTCAGACGTACCAAGTGCAGTCGCGCGGCTCGGA
CAATCCGCTGTGCAATGGCAAGAGTCTGTTGCCGCCCACTCAATCGCTTA
CCATGCCCACCATCATCAAGCCCAAGATATCGCAAAAGCCAAAGGCTCCG
AAACCACCGCCATTTATTGGGGGCCATTTGCCGCCAGGTTATAGCATACC
ATCAGGTTACGCAGGATCGGAGACACCACCATCGCCGCCGATGCCCAAAG
GACCACCACCACCGCCGCCGCCGGCATCTAGCGGAGGAATCTCACTGCTG
GACGTGATCAACGGGAAAGTGGATGCGCTAGCGCTCAGCAACGGATGCCA
GGGCTACATGGAGGAGGAAGTGGTTCCTTACGCCGTTGCGCTTTACGATT
TCGATGGCATCGAGCCGGGCGATCTTAGTTTTAGAGAAGGCGAGAAAATC
TATCTGTTGGACCATCCCACGCCGGAGTGGTTGCGCGGACGCACGCGTTC
CGGATGTGAGGGCATTTTTCCAATTAACTACGTGGACATCAAGGTGCCAT
TGGGGGCCACTGGTGGCGCTGCTGCAGCTCCAACCGCTAGTGCTGCAGCA
CCGTCACCCAGTCCGTCACAACAGCAACTGCCGACGGCGCTTTGTTTGTA
TCACTTCCCGGGCGAAGTCGAAGGAGATCTCGCCTTGCAGGAGAACGAAT
TGGTTACAGTGCTTTATAGGATTAACGAGGATTGGCTGTACGGCGAGGTG
GCGGGTCGTCAGGGACAGTTTCCGGCCAACTTCCTGGACCAGGTGCCCGC
CAATCTGCCTACGTTGTAAAAGCTTTCTAGACCAT

BS10709.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:11
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 1803 CG7129-PD 1..1803 17..1819 9015 100 Plus
l(3)05822-RC 1803 CG7129-PC 1..1803 17..1819 9015 100 Plus
l(3)05822-RB 1803 CG7129-PB 1..1803 17..1819 9015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-RD 2580 CG7129-RD 64..1867 16..1819 9020 100 Plus
l(3)05822-RC 2603 CG7129-RC 87..1890 16..1819 9020 100 Plus
l(3)05822-RB 2634 CG7129-RB 118..1921 16..1819 9020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18290079..18291499 1436..16 7105 100 Minus
3R 32079331 3R 18289765..18290020 1691..1436 1280 100 Minus
3R 32079331 3R 18289579..18289709 1819..1689 655 100 Minus
Blast to na_te.dros performed 2014-11-28 01:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6887 94..265 183 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6885 114..287 174 62.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6761..6900 113..254 173 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2484 99..256 172 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2347..2502 99..256 163 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2471 113..267 162 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6742..6923 63..253 149 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1530..1582 91..144 132 74.1 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3240..3311 75..145 132 68.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6828..6939 99..210 128 60.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6962 13..266 120 54.9 Plus
roo 9092 roo DM_ROO 9092bp 1066..1140 71..144 120 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7379..7447 101..170 113 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1062..1107 99..144 113 71.7 Plus

BS10709.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:27 Download gff for BS10709.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1919 17..1817 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:58 Download gff for BS10709.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1919 17..1817 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:28 Download gff for BS10709.complete
Subject Subject Range Query Range Percent Splice Strand
l(3)05822-RB 119..1919 17..1817 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:28 Download gff for BS10709.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18289581..18289707 1691..1817 100 <- Minus
3R 18289766..18290020 1436..1690 100 <- Minus
3R 18290080..18291498 17..1435 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:58 Download gff for BS10709.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14115303..14115429 1691..1817 100 <- Minus
arm_3R 14115488..14115742 1436..1690 100 <- Minus
arm_3R 14115802..14117220 17..1435 100   Minus

BS10709.pep Sequence

Translation from 16 to 1818

> BS10709.pep
MTIPSRPAPAPPGSRGQSAAAGANASLEQLRLQLQQQHLQQQQGAGGGLQ
KLTIKLPPPPKGPLQSQHKRTTVSNNNNGSLFDEPTGGTSITRKFPQARY
TPATNWDDDPFGGGSNGNDRFKKMPPPRPPPPKVLVNGQNMTKSNSSMAS
AVTGGTGRLMSNIFHRKKSTSTASAAASKAAAENRVYGLSSGNAGATPSN
NSSSSASSAAFSNVDWNAAWNTATTTTTTTSSSSHSSHYASQQTADAQLI
SFDSPPSSPTFTQKSNSDCVSVDSFSSDSNFSSPNNGSVSQPESGFEDDY
HRSRPSTQSPLDPWEAVDSVGLGGVDSFGSAPVRQTYQVQSRGSDNPLCN
GKSLLPPTQSLTMPTIIKPKISQKPKAPKPPPFIGGHLPPGYSIPSGYAG
SETPPSPPMPKGPPPPPPPASSGGISLLDVINGKVDALALSNGCQGYMEE
EVVPYAVALYDFDGIEPGDLSFREGEKIYLLDHPTPEWLRGRTRSGCEGI
FPINYVDIKVPLGATGGAAAAPTASAAAPSPSPSQQQLPTALCLYHFPGE
VEGDLALQENELVTVLYRINEDWLYGEVAGRQGQFPANFLDQVPANLPTL
*

BS10709.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
l(3)05822-PD 600 CG7129-PD 1..600 1..600 3173 100 Plus
l(3)05822-PC 600 CG7129-PC 1..600 1..600 3173 100 Plus
l(3)05822-PB 600 CG7129-PB 1..600 1..600 3173 100 Plus
l(3)05822-PA 600 CG7129-PA 1..600 1..600 3173 100 Plus
CAP-PN 313 CG18408-PN 61..180 456..591 166 31.6 Plus