Clone BS10710 Report

Search the DGRC for BS10710

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCG31549-RA
Protein status:BS10710.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10710.3prime Sequence

690 bp (528 high quality bases) assembled on 2006-04-19

> BS10710.3prime
ATGGTCTAGAAAGCTTCTATCGCGGGCACATGGCGTGACGACCTCCATCG
ACGGGCAGACTGATTCCCGTGGTGAAGCTGGCCTGATCGCTGGCCAGGAA
GGCAATGGCGGCAGCCACCTCCTTGACATCGCCAGGACGGCCCAAGGCGT
GGGTTATCTTGCAGTGTTCGAGGAACTTGGCATAGGTCTCCTCGTCCATG
CCGCCACGCTTGTGAATGTCAGTCACAATCACGCCGGGATTCACGGCGTT
TACGCGGACTCCTTTGGGGGCCAGTTCCAGGGCTATGCAGGCCGTGAACT
GGTCCACCGCTGCCTTAGACACATTGTAGGCCAGGACACCAGGAAAGGCA
CGCAGTCCACAGACACTGGATACGTTTACGATATTGCCCTTGGTCTTGAC
TAGCTCTGGAGTGGCCAGCATGGTTAGTTGGTACAGGGAACGCACATTGG
TGTTCATCAGACGATCGAATTGCTCCAGGCTGGTGGCTTCGATGGAGCCT
GTCTCCAGGATGCCCGCATTGTTAACGAGCACATCGATGCGACCGTGCTT
GGCCAGAGTGGCGCCCACAATCTGCTGCACCTCCGCCTCCTTGGTCATGT
CCGCCTGCAGTTCCAATGGCGTTGCTCCTCGGGCCGCCACAATGTTGTCG
GCCGTCTCCTTCAGCTTCTCCTCGTTGCGACCCACGATGA

BS10710.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PA 774 CG31549-RA 101..774 690..17 3345 99.8 Minus
CG31548-PA 771 CG31548-RA 610..715 178..73 305 91.5 Minus
CG12171-PA 774 CG12171-RA 658..767 133..24 200 87.2 Minus
CG31548-PA 771 CG31548-RA 367..426 421..362 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 166..839 690..17 3355 99.9 Minus
CG31549-RA 1130 CG31549-RA 305..978 690..17 3355 99.9 Minus
CG12171-RA 1014 CG12171-RA 293..832 563..24 915 78 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632496..5633169 690..17 3355 99.9 Minus
3R 32079331 3R 5633919..5634458 563..24 915 78 Minus
3R 32079331 3R 5634825..5635142 74..391 390 74.8 Plus
Blast to na_te.dros performed on 2015-02-12 10:51:08 has no hits.

BS10710.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:33 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 102..774 17..689 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:06 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 102..774 17..689 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:05:41 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 306..978 17..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:14 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 306..978 17..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:14 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5632497..5633169 17..689 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:05:41 Download gff for BS10710.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458219..1458891 17..689 99   Minus

BS10710.5prime Sequence

721 bp (589 high quality bases) assembled on 2006-04-19

> BS10710.5prime
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGAT

BS10710.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PA 774 CG31549-RA 1..705 17..721 3525 100 Plus
CG31548-PA 771 CG31548-RA 610..702 629..721 265 91.3 Plus
CG12171-PA 774 CG12171-RA 658..704 674..720 160 93.6 Plus
CG31548-PA 771 CG31548-RA 367..426 386..445 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..770 17..721 3525 100 Plus
CG31549-RA 1130 CG31549-RA 205..909 17..721 3525 100 Plus
CG12171-RA 1014 CG12171-RA 75..769 26..720 820 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633100 17..721 3525 100 Plus
3R 32079331 3R 5633701..5634395 26..720 820 74.5 Plus
3R 32079331 3R 5636104..5636553 721..272 735 77.6 Minus
3R 32079331 3R 5634838..5635142 720..416 355 74.4 Minus
Blast to na_te.dros performed on 2015-02-12 19:41:03 has no hits.

BS10710.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:34 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:08 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-PA 1..705 17..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:36 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..909 9..721 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:38 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..909 9..721 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:38 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5632387..5633100 9..721 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:36 Download gff for BS10710.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458109..1458822 9..721 99   Plus

BS10710.complete Sequence

806 bp assembled on 2006-11-01

GenBank Submission: FJ636726

> BS10710.complete
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGATAGAAGCTTTCTA
GACCAT

BS10710.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 774 CG31549-PB 1..774 17..790 3870 100 Plus
CG31549-RA 774 CG31549-PA 1..774 17..790 3870 100 Plus
CG12171-RA 774 CG12171-PA 10..767 26..783 970 75.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-RB 991 CG31549-RB 66..839 17..790 3870 100 Plus
CG31549-RA 1130 CG31549-RA 205..978 17..790 3870 100 Plus
CG12171-RA 1014 CG12171-RA 75..832 26..783 970 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5632396..5633169 17..790 3870 100 Plus
3R 32079331 3R 5633701..5634458 26..783 970 75.2 Plus
3R 32079331 3R 5634825..5635142 733..416 390 74.8 Minus
Blast to na_te.dros performed on 2014-11-27 16:35:22 has no hits.

BS10710.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:02 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 1..774 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:31 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..978 9..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:18 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 205..978 17..790 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:03 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 196..978 9..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:00 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
CG31549-RA 205..978 17..790 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:00 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5632396..5633169 17..790 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:18 Download gff for BS10710.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1458118..1458891 17..790 100   Plus

BS10710.pep Sequence

Translation from 16 to 789

> BS10710.pep
MSSFKDKVIIVTGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNI
VAAGGATPLELQADMTKEAEVQQIVGATLAKHGRIDVLVNNAGILETGSI
EATSLEQFDRLMNTNVRSLYQLTMLATPELVKTKGNIVNVSSVCGLRAFP
GVLAYNVSKAAVDQFTACIALELAPKGVRVNAVNPGVIVTDIHKRGGMDE
ETYAKFLEHCKITHALGRPGDVKEVAAAIAFLASDQASFTTGISLPVDGG
RHAMCPR*

BS10710.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31549-PB 257 CG31549-PB 1..257 1..257 1281 100 Plus
CG31549-PA 257 CG31549-PA 1..257 1..257 1281 100 Plus
CG12171-PA 257 CG12171-PA 1..257 1..257 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 3..257 914 69 Plus
CG31546-PA 264 CG31546-PA 11..264 4..257 706 56.5 Plus