Clone Sequence Records
BS10710.3prime Sequence
690 bp (528 high quality bases) assembled on 2006-04-19
> BS10710.3prime
ATGGTCTAGAAAGCTTCTATCGCGGGCACATGGCGTGACGACCTCCATCG
ACGGGCAGACTGATTCCCGTGGTGAAGCTGGCCTGATCGCTGGCCAGGAA
GGCAATGGCGGCAGCCACCTCCTTGACATCGCCAGGACGGCCCAAGGCGT
GGGTTATCTTGCAGTGTTCGAGGAACTTGGCATAGGTCTCCTCGTCCATG
CCGCCACGCTTGTGAATGTCAGTCACAATCACGCCGGGATTCACGGCGTT
TACGCGGACTCCTTTGGGGGCCAGTTCCAGGGCTATGCAGGCCGTGAACT
GGTCCACCGCTGCCTTAGACACATTGTAGGCCAGGACACCAGGAAAGGCA
CGCAGTCCACAGACACTGGATACGTTTACGATATTGCCCTTGGTCTTGAC
TAGCTCTGGAGTGGCCAGCATGGTTAGTTGGTACAGGGAACGCACATTGG
TGTTCATCAGACGATCGAATTGCTCCAGGCTGGTGGCTTCGATGGAGCCT
GTCTCCAGGATGCCCGCATTGTTAACGAGCACATCGATGCGACCGTGCTT
GGCCAGAGTGGCGCCCACAATCTGCTGCACCTCCGCCTCCTTGGTCATGT
CCGCCTGCAGTTCCAATGGCGTTGCTCCTCGGGCCGCCACAATGTTGTCG
GCCGTCTCCTTCAGCTTCTCCTCGTTGCGACCCACGATGA
BS10710.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PA | 774 | CG31549-RA | 101..774 | 690..17 | 3345 | 99.8 | Minus |
CG31548-PA | 771 | CG31548-RA | 610..715 | 178..73 | 305 | 91.5 | Minus |
CG12171-PA | 774 | CG12171-RA | 658..767 | 133..24 | 200 | 87.2 | Minus |
CG31548-PA | 771 | CG31548-RA | 367..426 | 421..362 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 166..839 | 690..17 | 3355 | 99.9 | Minus |
CG31549-RA | 1130 | CG31549-RA | 305..978 | 690..17 | 3355 | 99.9 | Minus |
CG12171-RA | 1014 | CG12171-RA | 293..832 | 563..24 | 915 | 78 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632496..5633169 | 690..17 | 3355 | 99.9 | Minus |
3R | 32079331 | 3R | 5633919..5634458 | 563..24 | 915 | 78 | Minus |
3R | 32079331 | 3R | 5634825..5635142 | 74..391 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:51:08 has no hits.
BS10710.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:33 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 102..774 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:06 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 102..774 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 02:05:41 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 306..978 | 17..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:14 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 306..978 | 17..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:14 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632497..5633169 | 17..689 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 02:05:41 Download gff for
BS10710.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458219..1458891 | 17..689 | 99 | | Minus |
BS10710.5prime Sequence
721 bp (589 high quality bases) assembled on 2006-04-19
> BS10710.5prime
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGAT
BS10710.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PA | 774 | CG31549-RA | 1..705 | 17..721 | 3525 | 100 | Plus |
CG31548-PA | 771 | CG31548-RA | 610..702 | 629..721 | 265 | 91.3 | Plus |
CG12171-PA | 774 | CG12171-RA | 658..704 | 674..720 | 160 | 93.6 | Plus |
CG31548-PA | 771 | CG31548-RA | 367..426 | 386..445 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..770 | 17..721 | 3525 | 100 | Plus |
CG31549-RA | 1130 | CG31549-RA | 205..909 | 17..721 | 3525 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 75..769 | 26..720 | 820 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633100 | 17..721 | 3525 | 100 | Plus |
3R | 32079331 | 3R | 5633701..5634395 | 26..720 | 820 | 74.5 | Plus |
3R | 32079331 | 3R | 5636104..5636553 | 721..272 | 735 | 77.6 | Minus |
3R | 32079331 | 3R | 5634838..5635142 | 720..416 | 355 | 74.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:41:03 has no hits.
BS10710.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:34 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:08 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-PA | 1..705 | 17..721 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:48:36 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..909 | 9..721 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:11:38 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..909 | 9..721 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:11:38 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632387..5633100 | 9..721 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:48:36 Download gff for
BS10710.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458109..1458822 | 9..721 | 99 | | Plus |
BS10710.complete Sequence
806 bp assembled on 2006-11-01
GenBank Submission: FJ636726
> BS10710.complete
GAAGTTATCAGTCGACATGTCATCCTTCAAGGACAAAGTGATTATTGTTA
CCGGCGCCAGCTCCGGCATCGGAGCAAGTGCCGCCGTCCATTTGGCGAAA
CTCGGAGGGCTCCTGGTCATCGTGGGTCGCAACGAGGAGAAGCTGAAGGA
GACGGCCGACAACATTGTGGCGGCCGGAGGAGCAACGCCATTGGAACTGC
AGGCGGACATGACCAAGGAGGCGGAGGTGCAGCAGATTGTGGGCGCCACT
CTGGCCAAGCACGGTCGCATCGATGTGCTCGTTAACAATGCGGGCATCCT
GGAGACAGGCTCCATCGAAGCCACCAGCCTGGAGCAATTCGATCGTCTGA
TGAACACCAATGTGCGTTCCCTGTACCAACTAACCATGCTGGCCACTCCA
GAGCTAGTCAAGACCAAGGGCAATATCGTAAACGTATCCAGTGTCTGTGG
ACTGCGTGCCTTTCCTGGTGTCCTGGCCTACAATGTGTCTAAGGCAGCGG
TGGACCAGTTCACGGCCTGCATAGCCCTGGAACTGGCCCCCAAAGGAGTC
CGCGTAAACGCCGTGAATCCCGGCGTGATTGTGACTGACATTCACAAGCG
TGGCGGCATGGACGAGGAGACCTATGCCAAGTTCCTCGAACACTGCAAGA
TAACCCACGCCTTGGGCCGTCCTGGCGATGTCAAGGAGGTGGCTGCCGCC
ATTGCCTTCCTGGCCAGCGATCAGGCCAGCTTCACCACGGGAATCAGTCT
GCCCGTCGATGGAGGTCGTCACGCCATGTGCCCGCGATAGAAGCTTTCTA
GACCAT
BS10710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 774 | CG31549-PB | 1..774 | 17..790 | 3870 | 100 | Plus |
CG31549-RA | 774 | CG31549-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG12171-RA | 774 | CG12171-PA | 10..767 | 26..783 | 970 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-RB | 991 | CG31549-RB | 66..839 | 17..790 | 3870 | 100 | Plus |
CG31549-RA | 1130 | CG31549-RA | 205..978 | 17..790 | 3870 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 75..832 | 26..783 | 970 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5632396..5633169 | 17..790 | 3870 | 100 | Plus |
3R | 32079331 | 3R | 5633701..5634458 | 26..783 | 970 | 75.2 | Plus |
3R | 32079331 | 3R | 5634825..5635142 | 733..416 | 390 | 74.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:22 has no hits.
BS10710.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:02 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:31 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..978 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:18 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 205..978 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:03 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 196..978 | 9..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:00 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31549-RA | 205..978 | 17..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:00 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5632396..5633169 | 17..790 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:18 Download gff for
BS10710.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1458118..1458891 | 17..790 | 100 | | Plus |
BS10710.pep Sequence
Translation from 16 to 789
> BS10710.pep
MSSFKDKVIIVTGASSGIGASAAVHLAKLGGLLVIVGRNEEKLKETADNI
VAAGGATPLELQADMTKEAEVQQIVGATLAKHGRIDVLVNNAGILETGSI
EATSLEQFDRLMNTNVRSLYQLTMLATPELVKTKGNIVNVSSVCGLRAFP
GVLAYNVSKAAVDQFTACIALELAPKGVRVNAVNPGVIVTDIHKRGGMDE
ETYAKFLEHCKITHALGRPGDVKEVAAAIAFLASDQASFTTGISLPVDGG
RHAMCPR*
BS10710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31549-PB | 257 | CG31549-PB | 1..257 | 1..257 | 1281 | 100 | Plus |
CG31549-PA | 257 | CG31549-PA | 1..257 | 1..257 | 1281 | 100 | Plus |
CG12171-PA | 257 | CG12171-PA | 1..257 | 1..257 | 1058 | 80.9 | Plus |
CG31548-PA | 256 | CG31548-PA | 2..256 | 3..257 | 914 | 69 | Plus |
CG31546-PA | 264 | CG31546-PA | 11..264 | 4..257 | 706 | 56.5 | Plus |