Clone BS10711 Report

Search the DGRC for BS10711

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptProsbeta2-RA
Protein status:BS10711.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10711.3prime Sequence

849 bp (786 high quality bases) assembled on 2006-04-19

> BS10711.3prime
ATGGTCTAGAAAGCTTTTAAGAAATCTCCATGGGCACCGCCTGGACGCGT
TCGGTGACGAGTAGGTCCTTAATGTTGGTGTGCAGCACGGTTGAGGTTCC
GGTCTTGAAGCGGTAGTCCAACTGGCGCTTGCCCTTCTTGTTAGCCAGCT
CATAGTTGCGCAGATACTCAACACTGCCCTTGCGGATAACACACAGATCG
ATGTTGGATCCCGAACCCAGATCGTTAAACACTCCGGAGGCGATGGCATC
GCGCACCAGTTTCTTGCCCTCCTCTTCGGACAAGTCAGGTTTCCAGCGAC
TTTCGAAAACGGTCATGGCGGCCAGGGAACCCGATCCCATGGTGGCGTAC
GGCAGCTTATCCGAACTTCCATGTGGGTGAATGGAATAGATGTGGGGTCC
AGTCTTATCCACTCCACCAAGCACCAGAGCGGCACTGATATGACCCTGGT
AGCGGAAAAGCATCTGCTTCAACATCGTATTGGCGGCCACAACGCGCACC
TCACGATCTGTCTGCAAGCGATGCAGCTCCAGCTGGGAGGAGATGAGATC
CGTAGTCATCTCAGTGTCCGCAGCGGTTCCAGCTCCACAGCAGTATATGT
TTTTGGCCAGGTAATGGATCTTGGCGCAGTTCTTGTCCGAGACAATGGGT
CCCTCGGTGGCTCGCGTATCGGCGCCCAGAATAACACCATCCTTGTAGAT
GATGCCAACGATTGTGGTTCCCGTCTTGGTGGTGGTCGGTGGCTTGAAGC
CTCGATTCAAAAGAGTTGCATTGCGCTTGCAGTTGTCGAAATTGAAACCA
GCGCGGGGCAGATCGCGTGCGTTATCCAAATCCATGTCGACTGATAACT

BS10711.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3329-PA 819 Prosbeta2-RA 1..819 835..17 4095 100 Minus
CG18341-PA 924 CG18341-RA 157..233 706..630 185 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 118..937 835..16 4100 100 Minus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 744..552 335 78.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001222 593..16 2890 100 Minus
3L 28110227 3L 15000199..15000379 774..594 905 100 Minus
3L 28110227 3L 15000068..15000129 835..774 310 100 Minus
X 23542271 X 5809181..5809299 744..626 280 82.4 Minus
Blast to na_te.dros performed on 2015-02-09 02:50:35 has no hits.

BS10711.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:35 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..819 17..835 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:09 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..819 17..835 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:50:25 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..944 9..835 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:23:33 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..944 9..835 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:23:33 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15000068..15000129 774..835 100 -> Minus
3L 15000200..15000379 594..773 100 -> Minus
3L 15000645..15001229 9..593 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:50:25 Download gff for BS10711.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993168..14993229 774..835 100 -> Minus
arm_3L 14993300..14993479 594..773 100 -> Minus
arm_3L 14993745..14994329 9..593 99   Minus

BS10711.5prime Sequence

811 bp (757 high quality bases) assembled on 2006-04-19

> BS10711.5prime
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAG

BS10711.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3329-PA 819 Prosbeta2-RA 1..795 17..811 3975 100 Plus
CG18341-PA 924 CG18341-RA 157..233 146..222 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:06
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 118..912 17..811 3975 100 Plus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 108..300 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001197 259..811 2765 100 Plus
3L 28110227 3L 15000199..15000379 78..258 905 100 Plus
3L 28110227 3L 15000068..15000129 17..78 310 100 Plus
X 23542271 X 5809181..5809299 108..226 280 82.4 Plus
Blast to na_te.dros performed on 2015-02-12 19:46:04 has no hits.

BS10711.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:36 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:11 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3329-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:50:18 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..912 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:07 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..912 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:07 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15000068..15000129 17..78 100 -> Plus
3L 15000200..15000379 79..258 100 -> Plus
3L 15000645..15001197 259..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:18 Download gff for BS10711.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993300..14993479 79..258 100 -> Plus
arm_3L 14993168..14993229 17..78 100 -> Plus
arm_3L 14993745..14994297 259..811 100   Plus

BS10711.complete Sequence

851 bp assembled on 2006-11-01

GenBank Submission: FJ636727

> BS10711.complete
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAGGCGGTGCCCATGGAGATTTCTTAAAAGCTTTCTAGACCA
T

BS10711.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 819 CG3329-PA 1..819 17..835 4095 100 Plus
Prosbeta2R1-RA 924 CG18341-PA 119..311 108..300 335 78.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-RA 1034 CG3329-RA 118..937 17..836 4100 100 Plus
Prosbeta2R1-RA 1077 CG18341-RA 171..363 108..300 335 78.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15000645..15001222 259..836 2890 100 Plus
3L 28110227 3L 15000199..15000379 78..258 905 100 Plus
3L 28110227 3L 15000068..15000129 17..78 310 100 Plus
X 23542271 X 5809181..5809299 108..226 280 82.4 Plus
Blast to na_te.dros performed on 2014-11-27 20:29:43 has no hits.

BS10711.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:04 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:34 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 113..939 17..843 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:27 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..934 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:04 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 113..939 17..843 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:27 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
Prosbeta2-RA 118..934 17..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:27 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15000200..15000379 79..258 100 -> Plus
3L 15000068..15000129 17..78 100 -> Plus
3L 15000645..15001219 259..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:27 Download gff for BS10711.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14993168..14993229 17..78 100 -> Plus
arm_3L 14993300..14993479 79..258 100 -> Plus
arm_3L 14993745..14994319 259..833 100   Plus

BS10711.pep Sequence

Translation from 16 to 834

> BS10711.pep
MDLDNARDLPRAGFNFDNCKRNATLLNRGFKPPTTTKTGTTIVGIIYKDG
VILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLISS
QLELHRLQTDREVRVVAANTMLKQMLFRYQGHISAALVLGGVDKTGPHIY
SIHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDAIAS
GVFNDLGSGSNIDLCVIRKGSVEYLRNYELANKKGKRQLDYRFKTGTSTV
LHTNIKDLLVTERVQAVPMEIS*

BS10711.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prosbeta2-PA 272 CG3329-PA 1..272 1..272 1407 100 Plus
Prosbeta2R1-PA 307 CG18341-PA 20..277 11..267 860 64.7 Plus
Prosbeta2R2-PA 322 CG12161-PA 22..279 12..268 533 43.7 Plus
Prosbeta1-PA 224 CG8392-PA 10..217 34..253 260 26.7 Plus
Prosbeta5-PA 282 CG12323-PA 73..254 39..219 237 33 Plus