Clone Sequence Records
BS10711.3prime Sequence
849 bp (786 high quality bases) assembled on 2006-04-19
> BS10711.3prime
ATGGTCTAGAAAGCTTTTAAGAAATCTCCATGGGCACCGCCTGGACGCGT
TCGGTGACGAGTAGGTCCTTAATGTTGGTGTGCAGCACGGTTGAGGTTCC
GGTCTTGAAGCGGTAGTCCAACTGGCGCTTGCCCTTCTTGTTAGCCAGCT
CATAGTTGCGCAGATACTCAACACTGCCCTTGCGGATAACACACAGATCG
ATGTTGGATCCCGAACCCAGATCGTTAAACACTCCGGAGGCGATGGCATC
GCGCACCAGTTTCTTGCCCTCCTCTTCGGACAAGTCAGGTTTCCAGCGAC
TTTCGAAAACGGTCATGGCGGCCAGGGAACCCGATCCCATGGTGGCGTAC
GGCAGCTTATCCGAACTTCCATGTGGGTGAATGGAATAGATGTGGGGTCC
AGTCTTATCCACTCCACCAAGCACCAGAGCGGCACTGATATGACCCTGGT
AGCGGAAAAGCATCTGCTTCAACATCGTATTGGCGGCCACAACGCGCACC
TCACGATCTGTCTGCAAGCGATGCAGCTCCAGCTGGGAGGAGATGAGATC
CGTAGTCATCTCAGTGTCCGCAGCGGTTCCAGCTCCACAGCAGTATATGT
TTTTGGCCAGGTAATGGATCTTGGCGCAGTTCTTGTCCGAGACAATGGGT
CCCTCGGTGGCTCGCGTATCGGCGCCCAGAATAACACCATCCTTGTAGAT
GATGCCAACGATTGTGGTTCCCGTCTTGGTGGTGGTCGGTGGCTTGAAGC
CTCGATTCAAAAGAGTTGCATTGCGCTTGCAGTTGTCGAAATTGAAACCA
GCGCGGGGCAGATCGCGTGCGTTATCCAAATCCATGTCGACTGATAACT
BS10711.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3329-PA | 819 | Prosbeta2-RA | 1..819 | 835..17 | 4095 | 100 | Minus |
CG18341-PA | 924 | CG18341-RA | 157..233 | 706..630 | 185 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 118..937 | 835..16 | 4100 | 100 | Minus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 744..552 | 335 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001222 | 593..16 | 2890 | 100 | Minus |
3L | 28110227 | 3L | 15000199..15000379 | 774..594 | 905 | 100 | Minus |
3L | 28110227 | 3L | 15000068..15000129 | 835..774 | 310 | 100 | Minus |
X | 23542271 | X | 5809181..5809299 | 744..626 | 280 | 82.4 | Minus |
Blast to na_te.dros performed on 2015-02-09 02:50:35 has no hits.
BS10711.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:35 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..819 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:09 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..819 | 17..835 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:50:25 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..944 | 9..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:23:33 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..944 | 9..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:23:33 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000068..15000129 | 774..835 | 100 | -> | Minus |
3L | 15000200..15000379 | 594..773 | 100 | -> | Minus |
3L | 15000645..15001229 | 9..593 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:50:25 Download gff for
BS10711.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993168..14993229 | 774..835 | 100 | -> | Minus |
arm_3L | 14993300..14993479 | 594..773 | 100 | -> | Minus |
arm_3L | 14993745..14994329 | 9..593 | 99 | | Minus |
BS10711.5prime Sequence
811 bp (757 high quality bases) assembled on 2006-04-19
> BS10711.5prime
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAG
BS10711.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3329-PA | 819 | Prosbeta2-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG18341-PA | 924 | CG18341-RA | 157..233 | 146..222 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 118..912 | 17..811 | 3975 | 100 | Plus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 108..300 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001197 | 259..811 | 2765 | 100 | Plus |
3L | 28110227 | 3L | 15000199..15000379 | 78..258 | 905 | 100 | Plus |
3L | 28110227 | 3L | 15000068..15000129 | 17..78 | 310 | 100 | Plus |
X | 23542271 | X | 5809181..5809299 | 108..226 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:46:04 has no hits.
BS10711.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:47:36 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:11 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3329-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:50:18 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..912 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:07 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..912 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:07 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000068..15000129 | 17..78 | 100 | -> | Plus |
3L | 15000200..15000379 | 79..258 | 100 | -> | Plus |
3L | 15000645..15001197 | 259..811 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:18 Download gff for
BS10711.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993300..14993479 | 79..258 | 100 | -> | Plus |
arm_3L | 14993168..14993229 | 17..78 | 100 | -> | Plus |
arm_3L | 14993745..14994297 | 259..811 | 100 | | Plus |
BS10711.complete Sequence
851 bp assembled on 2006-11-01
GenBank Submission: FJ636727
> BS10711.complete
GAAGTTATCAGTCGACATGGATTTGGATAACGCACGCGATCTGCCCCGCG
CTGGTTTCAATTTCGACAACTGCAAGCGCAATGCAACTCTTTTGAATCGA
GGCTTCAAGCCACCGACCACCACCAAGACGGGAACCACAATCGTTGGCAT
CATCTACAAGGATGGTGTTATTCTGGGCGCCGATACGCGAGCCACCGAGG
GACCCATTGTCTCGGACAAGAACTGCGCCAAGATCCATTACCTGGCCAAA
AACATATACTGCTGTGGAGCTGGAACCGCTGCGGACACTGAGATGACTAC
GGATCTCATCTCCTCCCAGCTGGAGCTGCATCGCTTGCAGACAGATCGTG
AGGTGCGCGTTGTGGCCGCCAATACGATGTTGAAGCAGATGCTTTTCCGC
TACCAGGGTCATATCAGTGCCGCTCTGGTGCTTGGTGGAGTGGATAAGAC
TGGACCCCACATCTATTCCATTCACCCACATGGAAGTTCGGATAAGCTGC
CGTACGCCACCATGGGATCGGGTTCCCTGGCCGCCATGACCGTTTTCGAA
AGTCGCTGGAAACCTGACTTGTCCGAAGAGGAGGGCAAGAAACTGGTGCG
CGATGCCATCGCCTCCGGAGTGTTTAACGATCTGGGTTCGGGATCCAACA
TCGATCTGTGTGTTATCCGCAAGGGCAGTGTTGAGTATCTGCGCAACTAT
GAGCTGGCTAACAAGAAGGGCAAGCGCCAGTTGGACTACCGCTTCAAGAC
CGGAACCTCAACCGTGCTGCACACCAACATTAAGGACCTACTCGTCACCG
AACGCGTCCAGGCGGTGCCCATGGAGATTTCTTAAAAGCTTTCTAGACCA
T
BS10711.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 819 | CG3329-PA | 1..819 | 17..835 | 4095 | 100 | Plus |
Prosbeta2R1-RA | 924 | CG18341-PA | 119..311 | 108..300 | 335 | 78.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-RA | 1034 | CG3329-RA | 118..937 | 17..836 | 4100 | 100 | Plus |
Prosbeta2R1-RA | 1077 | CG18341-RA | 171..363 | 108..300 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15000645..15001222 | 259..836 | 2890 | 100 | Plus |
3L | 28110227 | 3L | 15000199..15000379 | 78..258 | 905 | 100 | Plus |
3L | 28110227 | 3L | 15000068..15000129 | 17..78 | 310 | 100 | Plus |
X | 23542271 | X | 5809181..5809299 | 108..226 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:29:43 has no hits.
BS10711.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:04 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:34 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 113..939 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:27 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..934 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:04 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 113..939 | 17..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:27 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosbeta2-RA | 118..934 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:27 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15000200..15000379 | 79..258 | 100 | -> | Plus |
3L | 15000068..15000129 | 17..78 | 100 | -> | Plus |
3L | 15000645..15001219 | 259..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:27 Download gff for
BS10711.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14993168..14993229 | 17..78 | 100 | -> | Plus |
arm_3L | 14993300..14993479 | 79..258 | 100 | -> | Plus |
arm_3L | 14993745..14994319 | 259..833 | 100 | | Plus |
BS10711.pep Sequence
Translation from 16 to 834
> BS10711.pep
MDLDNARDLPRAGFNFDNCKRNATLLNRGFKPPTTTKTGTTIVGIIYKDG
VILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLISS
QLELHRLQTDREVRVVAANTMLKQMLFRYQGHISAALVLGGVDKTGPHIY
SIHPHGSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRDAIAS
GVFNDLGSGSNIDLCVIRKGSVEYLRNYELANKKGKRQLDYRFKTGTSTV
LHTNIKDLLVTERVQAVPMEIS*
BS10711.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosbeta2-PA | 272 | CG3329-PA | 1..272 | 1..272 | 1407 | 100 | Plus |
Prosbeta2R1-PA | 307 | CG18341-PA | 20..277 | 11..267 | 860 | 64.7 | Plus |
Prosbeta2R2-PA | 322 | CG12161-PA | 22..279 | 12..268 | 533 | 43.7 | Plus |
Prosbeta1-PA | 224 | CG8392-PA | 10..217 | 34..253 | 260 | 26.7 | Plus |
Prosbeta5-PA | 282 | CG12323-PA | 73..254 | 39..219 | 237 | 33 | Plus |