Clone Sequence Records
BS10727.3prime Sequence
888 bp (816 high quality bases) assembled on 2006-04-19
> BS10727.3prime
ATGGTCTAGAAAGCTTCTACGCGGCGAACAACTGAGCAGCAGCAGCAGCG
GCAGCCTGTTGCTGTTGTTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTG
CTGCTGTTGGGGATTTGTGGCCAGGATGGGAATGGCCGTGCCGTCGGCGG
TCAGGATCAGGGTCTGCGTGGCCTGTGGAGCCGATGTGGCTTGAGACTGC
GACGCCTGTTCGGTGGCCAGGGCCACGTTGCCCGGCAACGCAATCAGCTG
CTGCTGACCCGCCTTGCTGGGATGCGGCACCTGGGTGGCGGCGATTATGC
TGCCATCGGGCGACTGCAGCAGGATGGTGTTGGCCGGCAGGTTGAAGCAG
GTCACGGTGCCGTTGGAGGCCACAGTCTGCAGCTGAAGCGGAGGCGGTTG
TGGGGCCAGCAGCATGGCGGTGCCAGTCGTTGTGGCAGTCGCATTGTTCG
TGCTGCTCAGATCTAGGCCATTGGCGGTCGTCGTCTCTTGCAACTCCGGC
TGCTCCTGACTGGGCTCCTCGTCGATGATCTCCTCGACCAGGTCGTCCTC
GTTGAGCTCCTCGATGATGTCGTCGTCGTTCTCTATGTAGCCGGAAGCCT
CAACGCCGGAGCTAACCAAATTGACGACACCCGGCGGCGAGGGTGTTGGT
GTCGGCATGGCCAGGTAGTTCTCCCCCGACTTGGCCGTCACGGCCGTCCC
CTTGGGTATGCGGAACTTTCGCAGGATCTGGGCAGTCGAGGAGGAGAGCC
CGGACAGGGCAACTGCATCCTCATCCATGTCCTCGTCGAGCTCATCGTCC
TCGGCCAACATCTCCTCCTCGACCACTGGCTGCTGGTGTTCCCCAGGTGT
TGCCTCCGGAGCGACGATAACTTGGCGCTGATTGCGAT
BS10727.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17724-PA | 1557 | CG17724-RA | 686..1557 | 888..17 | 4335 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| seq-RB | 5631 | CG32904-RB | 3888..4759 | 888..17 | 4345 | 99.9 | Minus |
| Kdm4B-RE | 5718 | CG33182-RE | 3975..4846 | 888..17 | 4345 | 99.9 | Minus |
| CG17724-RE | 3779 | CG17724-RE | 1577..2448 | 888..17 | 4345 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13177425..13178296 | 17..888 | 4345 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:56:31 has no hits.
BS10727.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:01 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-PA | 686..1557 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:48 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-PA | 686..1557 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:32:08 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RB | 1054..1925 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:51 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RE | 1577..2448 | 17..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:51 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13177425..13178296 | 17..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:32:08 Download gff for
BS10727.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9064930..9065801 | 17..888 | 99 | | Plus |
BS10727.5prime Sequence
892 bp (822 high quality bases) assembled on 2006-04-19
> BS10727.5prime
GAAGTTATCAGTCGACATGTTCAAGAGGCCATACAACACCACACCAAGCA
ACAACAACAGAACCCAGAACACCATCACCAATCCAAGTCCGAACTCGAAT
TCGAATCCGAATCAGAATCAGAATCGGATTCAGAGTCAGATCAATAACAC
CACACAAGATGATTCGCAACGCCGGCAAGTGGAAGCGTATCGCATTTACT
ACGAAGAAATCGTCGTCAAGCAGGCTAATGCCCGTGCTCGTCTTGGCGAC
AGCAGCACACGTTGCAGCAACAGCATCACCAGCCGCAATACCAGCAGCAG
TGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGCTGACTTTGTGACCCACT
CGAGCCGAACTTCTCCCATGCCCAATCCCCCTGCCCAGTCCCATGTGCCG
CCAACCACAAGAAATGCGACTAATGCAATCCTTCCTCCCAAAACAAACAG
CAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGAGCCACTAGCA
ACAATGCATCCACCGTGGTGAGCAGCAGTGCGAGCAATGGCCTCAAGCCG
GCGGCCAAGAAGACACCAGTCATTCTGCTGGCCGCTCGTGGTGCCGCCAA
GCAGCCGCAGCTCAGCATTCTTAATGGCAACACCAAGGCCGGAACCGGAA
ATGCAAGCGGAGGCGGCGGCGGTGTTACATTGGTGCGCGTCAATGCAACC
AATCGCAATCAGCGCCAAGTTATCGTCGCTCCGGAGGCAACACCTGTGGA
ACACCAGCAGCCAGTGGTCGAGGAGGAGATGTTGGCCGAGGACGATGAGC
TCGACGAGGACATGGATGAGGATGCAGGTGCCCTGTCCGGGCTCTCCTCC
TCGACTGCCCAGATCCTGCGAAAGTTCCGCATACCCAAGGGG
BS10727.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17724-PA | 1557 | CG17724-RA | 1..876 | 17..892 | 4355 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| seq-RB | 5631 | CG32904-RB | 3203..4078 | 17..892 | 4365 | 99.9 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 3290..4165 | 17..892 | 4365 | 99.9 | Plus |
| CG17724-RE | 3779 | CG17724-RE | 892..1767 | 17..892 | 4365 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13178106..13178981 | 892..17 | 4365 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-12 06:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2984 | 34..636 | 225 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2560 | 243..510 | 175 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6822 | 246..326 | 171 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6853 | 246..315 | 170 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6844 | 246..327 | 167 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1158 | 247..326 | 166 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6866 | 250..316 | 164 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2439 | 246..322 | 160 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6790 | 250..315 | 159 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2423 | 247..327 | 153 | 65.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3345 | 218..310 | 134 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2425 | 246..314 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 247..298 | 125 | 71.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..705 | 32..224 | 125 | 58.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1163 | 244..298 | 122 | 69.1 | Plus |
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 2532..2567 | 131..96 | 117 | 80.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2837 | 246..315 | 116 | 62.9 | Plus |
| gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 551..606 | 30..85 | 109 | 66.1 | Plus |
BS10727.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:02 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:50 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:42:06 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RB | 369..1244 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:22 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RE | 892..1767 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:22 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13178106..13178981 | 17..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:42:06 Download gff for
BS10727.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9065611..9066486 | 17..892 | 99 | | Minus |
BS10727.complete Sequence
1589 bp assembled on 2006-11-01
GenBank Submission: FJ636728
> BS10727.complete
GAAGTTATCAGTCGACATGTTCAAGAGGCCATACAACACCACACCAAGCA
ACAACAACAGAACCCAGAACACCATCACCAATCCAAGTCCGAACTCGAAT
TCGAATCCGAATCAGAATCAGAATCGGATTCAGAGTCAGATCAATAACAC
CACACAAGATGATTCGCAACGCCGGCAAGTGGAAGCGTATCGCATTTACT
ACGAAGAAATCGTCGTCAAGCAGGCTAATGCCCGTGCTCGTCTTGGCGAC
AGCAGCACACGTTGCAGCAACAGCATCACCAGCCGCAATACCAGCAGCAG
TGGCCGCGGCAGCAGTTTCGTCGACAAGTTCGCTGACTTTGTGACCCACT
CGAGCCGAACTTCTCCCATGCCCAATCCCCCTGCCCAGTCCCATGTGCCG
CCAACCACAAGAAATGCGACTAATGCAATCCTTCCTCCCAAAACAAACAG
CAGCAGCAGCAGCAGCGGCGGCAACAGCAGCAGCAGCGGAGCCACTAGCA
ACAATGCATCCACCGTGGTGAGCAGCAGTGCGAGCAATGGCCTCAAGCCG
GCGGCCAAGAAGACACCAGTCATTCTGCTGGCCGCTCGTGGTGCCGCCAA
GCAGCCGCAGCTCAGCATTCTTAATGGCAACACCAAGGCCGGAACCGGAA
ATGCAAGCGGAGGCGGCGGCGGTGTTACATTGGTGCGCGTCAATGCAACC
AATCGCAATCAGCGCCAAGTTATCGTCGCTCCGGAGGCAACACCTGTGGA
ACACCAGCAGCCAGTGGTCGAGGAGGAGATGTTGGCCGAGGACGATGAGC
TCGACGAGGACATGGATGAGGATGCAGTTGCCCTGTCCGGGCTCTCCTCC
TCGACTGCCCAGATCCTGCGAAAGTTCCGCATACCCAAGGGGACGGCCGT
GACGGCCAAGTCGGGGGAGAACTACCTGGCCATGCCGACACCAACACCCT
CGCCGCCGGGTGTCGTCAATTTGGTTAGCTCCGGCGTTGAGGCTTCCGGC
TACATAGAGAACGACGACGACATCATCGAGGAGCTCAACGAGGACGACCT
GGTCGAGGAGATCATCGACGAGGAGCCCAGTCAGGAGCAGCCGGAGTTGC
AAGAGACGACGACCGCCAATGGCCTAGATCTGAGCAGCACGAACAATGCG
ACTGCCACAACGACTGGCACCGCCATGCTGCTGGCCCCACAACCGCCTCC
GCTTCAGCTGCAGACTGTGGCCTCCAACGGCACCGTGACCTGCTTCAACC
TGCCGGCCAACACCATCCTGCTGCAGTCGCCCGATGGCAGCATAATCGCC
GCCACCCAGGTGCCGCATCCCAGCAAGGCGGGTCAGCAGCAGCTGATTGC
GTTGCCGGGCAACGTGGCCCTGGCCACCGAACAGGCGTCGCAGTCTCAAG
CCACATCGGCTCCACAGGCCACGCAGACCCTGATCCTGACCGCCGACGGC
ACGGCCATTCCCATCCTGGCCACAAATCCCCAACAGCAGCAGCAGCAGCA
GCAGCAACAGCAGCAGCAGCAACAACAGCAACAGGCTGCCGCTGCTGCTG
CTGCTCAGTTGTTCGCCGCGTAGAAGCTTTCTAGACCAT
BS10727.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17724-RE | 1629 | CG17724-PE | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG17724-RD | 1557 | CG17724-PD | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG17724-RB | 1557 | CG17724-PB | 1..1557 | 17..1573 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| seq-RB | 5631 | CG32904-RB | 3203..4759 | 17..1573 | 7785 | 100 | Plus |
| Kdm4B-RE | 5718 | CG33182-RE | 3290..4846 | 17..1573 | 7785 | 100 | Plus |
| CG17724-RE | 3779 | CG17724-RE | 892..2448 | 17..1573 | 7785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13177425..13178981 | 1573..17 | 7785 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2379..2984 | 34..636 | 225 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2560 | 243..510 | 175 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6742..6822 | 246..326 | 171 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6784..6853 | 246..315 | 170 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6844 | 246..327 | 167 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1158 | 247..326 | 166 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6866 | 250..316 | 164 | 71.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2439 | 246..322 | 160 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6790 | 250..315 | 159 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2423 | 247..327 | 153 | 65.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3252..3345 | 218..310 | 134 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2425 | 246..314 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 247..298 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1109..1163 | 244..298 | 122 | 69.1 | Plus |
| transib2 | 2844 | transib2 TRANSIB2 2844bp | 2532..2567 | 131..96 | 117 | 80.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2837 | 246..315 | 116 | 62.9 | Plus |
BS10727.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:05 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RA | 1..1557 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:36 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RA | 984..2540 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:13:22 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RB | 374..1925 | 22..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:05 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RA | 984..2540 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:01 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17724-RE | 897..2448 | 22..1573 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:01 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13177425..13178976 | 22..1573 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:13:22 Download gff for
BS10727.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9064930..9066481 | 22..1573 | 100 | | Minus |
BS10727.pep Sequence
Translation from 16 to 1572
> BS10727.pep
MFKRPYNTTPSNNNRTQNTITNPSPNSNSNPNQNQNRIQSQINNTTQDDS
QRRQVEAYRIYYEEIVVKQANARARLGDSSTRCSNSITSRNTSSSGRGSS
FVDKFADFVTHSSRTSPMPNPPAQSHVPPTTRNATNAILPPKTNSSSSSS
GGNSSSSGATSNNASTVVSSSASNGLKPAAKKTPVILLAARGAAKQPQLS
ILNGNTKAGTGNASGGGGGVTLVRVNATNRNQRQVIVAPEATPVEHQQPV
VEEEMLAEDDELDEDMDEDAVALSGLSSSTAQILRKFRIPKGTAVTAKSG
ENYLAMPTPTPSPPGVVNLVSSGVEASGYIENDDDIIEELNEDDLVEEII
DEEPSQEQPELQETTTANGLDLSSTNNATATTTGTAMLLAPQPPPLQLQT
VASNGTVTCFNLPANTILLQSPDGSIIAATQVPHPSKAGQQQLIALPGNV
ALATEQASQSQATSAPQATQTLILTADGTAIPILATNPQQQQQQQQQQQQ
QQQQQQAAAAAAAQLFAA*
BS10727.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17724-PE | 542 | CG17724-PE | 1..518 | 1..518 | 2597 | 100 | Plus |
| CG17724-PD | 518 | CG17724-PD | 1..518 | 1..518 | 2597 | 100 | Plus |
| CG17724-PB | 518 | CG17724-PB | 1..518 | 1..518 | 2597 | 100 | Plus |
| CG17724-PF | 518 | CG17724-PF | 1..518 | 1..518 | 2597 | 100 | Plus |
| CG17724-PA | 518 | CG17724-PA | 1..518 | 1..518 | 2597 | 100 | Plus |
