Clone BS10733 Report

Search the DGRC for BS10733

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSaf-B-RC
Protein status:BS10733.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10733.3prime Sequence

912 bp (802 high quality bases) assembled on 2006-04-19

> BS10733.3prime
ATGGTCTAGAAAGCTTCTAATCACAAGGACAAATGCTTTCCGAGAGAGTA
TAAAATAAATATATTGGTATATCTGTGTTGTCGCCTCTGCGTTGGCACGA
GTGCAACGCATTACGGTCTGTTTTGGTTTTTTTTTTAGCATACTTCATCT
GTTGTCGCTTCAGCTCGAGGCGTTCCAGCTCGATTTTTTCTCTCTCCAGC
TTCTGGCGCTCGCGCTCCATCCGCAAAAGCTCGGCCTTCTCCCGCTCGAG
CCGTTCCCGCTCCACAGCGAGCTTGCGCCGTTCTTCCTGCAGACGTTCCT
CTTCGATTCGCTGGCGCTCACGGGCCTCCCGACGGCGACGCTCCTCCTCA
CGCAGCTCACGCTCCCTTTCCCGAAGGCGCTGGCGCTCGCGCTCCTCACG
TATCTTCTGGTAGGACAGCATCTCTCGTTGACGACGCTCGCGCTCCCTCT
GGCGCTGCTGAATCTCACGGTCGACGTCGCGTGGATTGCGCCCCGAACGA
TGATCCTGACTACCCTTTGCGGATCGCTCGCGATCGTGGCGCGGTCTATC
CTGGCTTGCCAACGACTTGCCCCGGTCATCGTTGCGACGGCTGCGGGCCC
TGTTGCTCTCCTTGCCATCACGCTTTAAATCGCCACCAACAGACTTGCTG
TCGCCGTTTCCATCGCCGCCCTTCTTGTCATCGCCACTGTTGGAGCTGGA
GCCCTTGCCACTACCAGACTTTTTGCCACTGTCGTCTTCCTTCTTCTTGT
TTCCGGCGTCGCCCGGAGCCTTGCCCTTGCCCTCTTTGGAATTCAAGCTG
CCGCCAATCTCGTTCTTGGTACGCTCCACCGAAATGATGCGTCCATGCAA
TTCGGTGCGGTGCAGATTTTCGATGCAACGCGAGGCGTCTGCCGAGGAGG
ACATGGTCACGT

BS10733.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6995-PC 1179 CG6995-RC 284..1179 912..17 4480 100 Minus
CG6995-PA 2001 CG6995-RA 284..1053 912..143 3850 100 Minus
CG6995-PB 2787 CG6995-RB 1070..1839 912..143 3850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 2102..2997 912..17 4480 100 Minus
Saf-B-RB 3124 CG6995-RB 1223..1992 912..143 3850 100 Minus
Saf-B-RA 4003 CG6995-RA 2102..2871 912..143 3850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24819999..24820894 912..17 4480 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:56:09 has no hits.

BS10733.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:08 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 284..1179 17..912 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:58 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 284..1179 17..912 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:32:05 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 2102..2997 17..912 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:43 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 2102..2997 17..912 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:43 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24819999..24820894 17..912 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:32:05 Download gff for BS10733.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645721..20646616 17..912 100   Minus

BS10733.5prime Sequence

874 bp (805 high quality bases) assembled on 2006-04-19

> BS10733.5prime
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCANAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGT

BS10733.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6995-PA 2001 CG6995-RA 1..858 17..874 4271 99.8 Plus
CG6995-PC 1179 CG6995-RC 1..858 17..874 4271 99.8 Plus
CG6995-PB 2787 CG6995-RB 798..1644 28..874 4216 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 1817..2676 15..874 4289 99.9 Plus
Saf-B-RA 4003 CG6995-RA 1817..2676 15..874 4289 99.9 Plus
Saf-B-RB 3124 CG6995-RB 951..1797 28..874 4224 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24819714..24820573 15..874 4289 99.9 Plus
Blast to na_te.dros performed on 2015-02-04 04:43:55 has no hits.

BS10733.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:09 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:12:00 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6995-PC 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:04:31 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RA 1808..2676 5..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:42 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RA 1808..2676 5..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:42 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24819705..24820573 5..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:04:31 Download gff for BS10733.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645427..20646295 5..874 99   Plus

BS10733.complete Sequence

1211 bp assembled on 2006-11-01

GenBank Submission: FJ636729

> BS10733.complete
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCAAAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGTCGCCGTCGGGAGGCCCGTGAGCGCCA
GCGAATCGAAGAGGAACGTCTGCAGGAAGAACGGCGCAAGCTCGCTGTGG
AGCGGGAACGGCTCGAGCGGGAGAAGGCCGAGCTTTTGCGGATGGAGCGC
GAGCGCCAGAAGCTGGAGAGAGAAAAAATCGAGCTGGAACGCCTCGAGCT
GAAGCGACAACAGATGAAGTATGCTAAAAAAAAAACCAAAACAGACCGTA
ATGCGTTGCACTCGTGCCAACGCAGAGGCGACAACACAGATATACCAATA
TATTTATTTTATACTCTCTCGGAAAGCATTTGTCCTTGTGATTAGAAGCT
TTCTAGACCAT

BS10733.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 1179 CG6995-PC 1..1179 17..1195 5895 100 Plus
Saf-B-RA 2001 CG6995-PA 1..1053 17..1069 5265 100 Plus
Saf-B-RB 2787 CG6995-PB 798..1839 28..1069 5210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-RC 4332 CG6995-RC 1817..2997 15..1195 5905 100 Plus
Saf-B-RA 4003 CG6995-RA 1817..2871 15..1069 5275 100 Plus
Saf-B-RB 3124 CG6995-RB 951..1992 28..1069 5210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24819714..24820894 15..1195 5905 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:02:15 has no hits.

BS10733.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:06 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1..1179 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:37 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1018..2207 5..1195 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:39 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 1819..2997 17..1195 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:07 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
CG6995-RC 1018..2207 5..1195 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:27 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
Saf-B-RC 1819..2997 17..1195 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:27 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24819716..24820894 17..1195 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:39 Download gff for BS10733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20645438..20646616 17..1195 100   Plus

BS10733.pep Sequence

Translation from 16 to 1194

> BS10733.pep
MELAEKSTAAPGGATSSTASSAAGSKSGSGSSAGNGTGANSNNKQATLSR
NLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSS
SADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEGKGKAPGDAGNK
KKEDDSGKKSGSGKGSSSNSGDDKKGGDGNGDSKSVGGDLKRDGKESNRA
RSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQR
ERERRQREMLSYQKIREERERQRLRERERELREEERRRREARERQRIEEE
RLQEERRKLAVERERLEREKAELLRMERERQKLEREKIELERLELKRQQM
KYAKKKTKTDRNALHSCQRRGDNTDIPIYLFYTLSESICPCD*

BS10733.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Saf-B-PC 392 CG6995-PC 1..392 1..392 1989 100 Plus
Saf-B-PA 666 CG6995-PA 1..377 1..375 1770 94.4 Plus
Saf-B-PB 928 CG6995-PB 267..639 5..375 1752 94.4 Plus
CG2839-PA 826 CG2839-PA 487..700 150..370 244 29 Plus
CG2839-PA 826 CG2839-PA 311..559 124..372 238 24.9 Plus
CG2839-PA 826 CG2839-PA 465..712 109..370 224 27.1 Plus
CG2839-PA 826 CG2839-PA 525..758 137..373 224 26.6 Plus
CG2839-PA 826 CG2839-PA 389..628 124..361 220 25.5 Plus
CG2839-PA 826 CG2839-PA 359..574 149..370 218 26.2 Plus
CG2839-PA 826 CG2839-PA 267..462 149..361 217 28.9 Plus
CG2839-PA 826 CG2839-PA 436..664 137..370 217 27.4 Plus
CG2839-PA 826 CG2839-PA 354..599 113..361 213 25.3 Plus
CG2839-PA 826 CG2839-PA 433..659 150..370 210 28.1 Plus
CG2839-PA 826 CG2839-PA 276..447 191..370 208 29.4 Plus
CG2839-PA 826 CG2839-PA 272..511 109..361 206 22.4 Plus
CG4119-PB 998 CG4119-PB 232..485 106..370 200 27.9 Plus
CG2839-PA 826 CG2839-PA 266..441 196..370 197 28.8 Plus
CG2839-PA 826 CG2839-PA 264..420 213..372 192 31.7 Plus