Clone Sequence Records
BS10733.3prime Sequence
912 bp (802 high quality bases) assembled on 2006-04-19
> BS10733.3prime
ATGGTCTAGAAAGCTTCTAATCACAAGGACAAATGCTTTCCGAGAGAGTA
TAAAATAAATATATTGGTATATCTGTGTTGTCGCCTCTGCGTTGGCACGA
GTGCAACGCATTACGGTCTGTTTTGGTTTTTTTTTTAGCATACTTCATCT
GTTGTCGCTTCAGCTCGAGGCGTTCCAGCTCGATTTTTTCTCTCTCCAGC
TTCTGGCGCTCGCGCTCCATCCGCAAAAGCTCGGCCTTCTCCCGCTCGAG
CCGTTCCCGCTCCACAGCGAGCTTGCGCCGTTCTTCCTGCAGACGTTCCT
CTTCGATTCGCTGGCGCTCACGGGCCTCCCGACGGCGACGCTCCTCCTCA
CGCAGCTCACGCTCCCTTTCCCGAAGGCGCTGGCGCTCGCGCTCCTCACG
TATCTTCTGGTAGGACAGCATCTCTCGTTGACGACGCTCGCGCTCCCTCT
GGCGCTGCTGAATCTCACGGTCGACGTCGCGTGGATTGCGCCCCGAACGA
TGATCCTGACTACCCTTTGCGGATCGCTCGCGATCGTGGCGCGGTCTATC
CTGGCTTGCCAACGACTTGCCCCGGTCATCGTTGCGACGGCTGCGGGCCC
TGTTGCTCTCCTTGCCATCACGCTTTAAATCGCCACCAACAGACTTGCTG
TCGCCGTTTCCATCGCCGCCCTTCTTGTCATCGCCACTGTTGGAGCTGGA
GCCCTTGCCACTACCAGACTTTTTGCCACTGTCGTCTTCCTTCTTCTTGT
TTCCGGCGTCGCCCGGAGCCTTGCCCTTGCCCTCTTTGGAATTCAAGCTG
CCGCCAATCTCGTTCTTGGTACGCTCCACCGAAATGATGCGTCCATGCAA
TTCGGTGCGGTGCAGATTTTCGATGCAACGCGAGGCGTCTGCCGAGGAGG
ACATGGTCACGT
BS10733.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6995-PC | 1179 | CG6995-RC | 284..1179 | 912..17 | 4480 | 100 | Minus |
CG6995-PA | 2001 | CG6995-RA | 284..1053 | 912..143 | 3850 | 100 | Minus |
CG6995-PB | 2787 | CG6995-RB | 1070..1839 | 912..143 | 3850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 2102..2997 | 912..17 | 4480 | 100 | Minus |
Saf-B-RB | 3124 | CG6995-RB | 1223..1992 | 912..143 | 3850 | 100 | Minus |
Saf-B-RA | 4003 | CG6995-RA | 2102..2871 | 912..143 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24819999..24820894 | 912..17 | 4480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:56:09 has no hits.
BS10733.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:08 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 284..1179 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:11:58 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 284..1179 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:32:05 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 2102..2997 | 17..912 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:24:43 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 2102..2997 | 17..912 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:24:43 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24819999..24820894 | 17..912 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:32:05 Download gff for
BS10733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645721..20646616 | 17..912 | 100 | | Minus |
BS10733.5prime Sequence
874 bp (805 high quality bases) assembled on 2006-04-19
> BS10733.5prime
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCANAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGT
BS10733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6995-PA | 2001 | CG6995-RA | 1..858 | 17..874 | 4271 | 99.8 | Plus |
CG6995-PC | 1179 | CG6995-RC | 1..858 | 17..874 | 4271 | 99.8 | Plus |
CG6995-PB | 2787 | CG6995-RB | 798..1644 | 28..874 | 4216 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:43:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 1817..2676 | 15..874 | 4289 | 99.9 | Plus |
Saf-B-RA | 4003 | CG6995-RA | 1817..2676 | 15..874 | 4289 | 99.9 | Plus |
Saf-B-RB | 3124 | CG6995-RB | 951..1797 | 28..874 | 4224 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24819714..24820573 | 15..874 | 4289 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:43:55 has no hits.
BS10733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:09 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PA | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:12:00 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-PC | 1..858 | 17..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:04:31 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RA | 1808..2676 | 5..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:38:42 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RA | 1808..2676 | 5..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:38:42 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24819705..24820573 | 5..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:04:31 Download gff for
BS10733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645427..20646295 | 5..874 | 99 | | Plus |
BS10733.complete Sequence
1211 bp assembled on 2006-11-01
GenBank Submission: FJ636729
> BS10733.complete
GAAGTTATCAGTCGACATGGAACTTGCAGAGAAATCGACAGCAGCACCTG
GTGGTGCCACATCCTCCACTGCATCGAGTGCCGCTGGCAGTAAATCGGGA
TCCGGTTCCAGTGCTGGCAATGGTACTGGGGCCAACTCAAACAACAAGCA
GGCGACGCTGTCGCGAAATCTATGGGTTTCTGGGCTGTCCACTTTAACCC
GTGCCAGCGACCTTAAGGCAATCTTCTCCAAGTTTGGCAAGGTGATTGGG
GCCAAGGTGGTCACCAATACGCGTACTCCGGGCACTCGCTGCTACGGATA
CGTGACCATGTCCTCCTCGGCAGACGCCTCGCGTTGCATCGAAAATCTGC
ACCGCACCGAATTGCATGGACGCATCATTTCGGTGGAGCGTACCAAGAAC
GAGATTGGCGGCAGCTTGAATTCCAAAGAGGGCAAGGGCAAGGCTCCGGG
CGACGCCGGAAACAAGAAGAAGGAAGACGACAGTGGCAAAAAGTCTGGTA
GTGGCAAGGGCTCCAGCTCCAACAGTGGCGATGACAAGAAGGGCGGCGAT
GGAAACGGCGACAGCAAGTCTGTTGGTGGCGATTTAAAGCGTGATGGCAA
GGAGAGCAACAGGGCCCGCAGCCGTCGCAACGATGACCGGGGCAAGTCGT
TGGCAAGCCAGGATAGACCGCGCCACGATCGCGAGCGATCCGCAAAGGGT
AGTCAGGATCATCGTTCGGGGCGCAATCCACGCGACGTCGACCGTGAGAT
TCAGCAGCGCCAGAGGGAGCGCGAGCGTCGTCAACGAGAGATGCTGTCCT
ACCAGAAGATACGTGAGGAGCGCGAGCGCCAGCGCCTTCGGGAAAGGGAG
CGTGAGCTGCGTGAGGAGGAGCGTCGCCGTCGGGAGGCCCGTGAGCGCCA
GCGAATCGAAGAGGAACGTCTGCAGGAAGAACGGCGCAAGCTCGCTGTGG
AGCGGGAACGGCTCGAGCGGGAGAAGGCCGAGCTTTTGCGGATGGAGCGC
GAGCGCCAGAAGCTGGAGAGAGAAAAAATCGAGCTGGAACGCCTCGAGCT
GAAGCGACAACAGATGAAGTATGCTAAAAAAAAAACCAAAACAGACCGTA
ATGCGTTGCACTCGTGCCAACGCAGAGGCGACAACACAGATATACCAATA
TATTTATTTTATACTCTCTCGGAAAGCATTTGTCCTTGTGATTAGAAGCT
TTCTAGACCAT
BS10733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 1179 | CG6995-PC | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Saf-B-RA | 2001 | CG6995-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Saf-B-RB | 2787 | CG6995-PB | 798..1839 | 28..1069 | 5210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-RC | 4332 | CG6995-RC | 1817..2997 | 15..1195 | 5905 | 100 | Plus |
Saf-B-RA | 4003 | CG6995-RA | 1817..2871 | 15..1069 | 5275 | 100 | Plus |
Saf-B-RB | 3124 | CG6995-RB | 951..1992 | 28..1069 | 5210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24819714..24820894 | 15..1195 | 5905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:02:15 has no hits.
BS10733.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:06 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1..1179 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:37 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1018..2207 | 5..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:39 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 1819..2997 | 17..1195 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:07 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6995-RC | 1018..2207 | 5..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:27 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Saf-B-RC | 1819..2997 | 17..1195 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:27 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24819716..24820894 | 17..1195 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:39 Download gff for
BS10733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20645438..20646616 | 17..1195 | 100 | | Plus |
BS10733.pep Sequence
Translation from 16 to 1194
> BS10733.pep
MELAEKSTAAPGGATSSTASSAAGSKSGSGSSAGNGTGANSNNKQATLSR
NLWVSGLSTLTRASDLKAIFSKFGKVIGAKVVTNTRTPGTRCYGYVTMSS
SADASRCIENLHRTELHGRIISVERTKNEIGGSLNSKEGKGKAPGDAGNK
KKEDDSGKKSGSGKGSSSNSGDDKKGGDGNGDSKSVGGDLKRDGKESNRA
RSRRNDDRGKSLASQDRPRHDRERSAKGSQDHRSGRNPRDVDREIQQRQR
ERERRQREMLSYQKIREERERQRLRERERELREEERRRREARERQRIEEE
RLQEERRKLAVERERLEREKAELLRMERERQKLEREKIELERLELKRQQM
KYAKKKTKTDRNALHSCQRRGDNTDIPIYLFYTLSESICPCD*
BS10733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Saf-B-PC | 392 | CG6995-PC | 1..392 | 1..392 | 1989 | 100 | Plus |
Saf-B-PA | 666 | CG6995-PA | 1..377 | 1..375 | 1770 | 94.4 | Plus |
Saf-B-PB | 928 | CG6995-PB | 267..639 | 5..375 | 1752 | 94.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 487..700 | 150..370 | 244 | 29 | Plus |
CG2839-PA | 826 | CG2839-PA | 311..559 | 124..372 | 238 | 24.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 465..712 | 109..370 | 224 | 27.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 525..758 | 137..373 | 224 | 26.6 | Plus |
CG2839-PA | 826 | CG2839-PA | 389..628 | 124..361 | 220 | 25.5 | Plus |
CG2839-PA | 826 | CG2839-PA | 359..574 | 149..370 | 218 | 26.2 | Plus |
CG2839-PA | 826 | CG2839-PA | 267..462 | 149..361 | 217 | 28.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 436..664 | 137..370 | 217 | 27.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 354..599 | 113..361 | 213 | 25.3 | Plus |
CG2839-PA | 826 | CG2839-PA | 433..659 | 150..370 | 210 | 28.1 | Plus |
CG2839-PA | 826 | CG2839-PA | 276..447 | 191..370 | 208 | 29.4 | Plus |
CG2839-PA | 826 | CG2839-PA | 272..511 | 109..361 | 206 | 22.4 | Plus |
CG4119-PB | 998 | CG4119-PB | 232..485 | 106..370 | 200 | 27.9 | Plus |
CG2839-PA | 826 | CG2839-PA | 266..441 | 196..370 | 197 | 28.8 | Plus |
CG2839-PA | 826 | CG2839-PA | 264..420 | 213..372 | 192 | 31.7 | Plus |