Clone Sequence Records
BS10744.3prime Sequence
842 bp (793 high quality bases) assembled on 2006-04-19
> BS10744.3prime
ATGGTCTAGAAAGCTTTCAAATTTCATTTAACTTAAATCTCGCATTAATG
TTGACCGAACTCAATTCGGTAACCAGATACTTAAAAGAGAATGGTATCTC
GATCATCGATACAGAACTGTTATCCCCGCACAAGCGACACGTATCTGGCT
GAGAAGAGAGTCCTCCCGTCTCATTTCGCTTAACAATGCGTTGCAGAGGC
GCCAGAATGGAGCCGCACTTGTGGCACACCAGGGTGTGCGTCTTATCGGA
GTTGTGGAACAAGCGATCCTGCAGCAGGAAAGCAGCACCGTGAGAGATCA
AAGCATCCCGTTCCATCTCACCGAATCTGACGCCTCCACCGCGTTTTCTG
CCCTTAATTGGCTGATGGGTCCGAGCTTCCACCGCTCCCGTAGATCTTAC
TTGCCACTTGTCAAACACCATGTGCCGAAGACGCTGGTAATGCACCACTC
CAAAAAATATGTCAGCAGTCATCTCGCGGCCATCTACGCCGGAATACAGC
CTCTCCGTTCCGTAGTAATTGTAACCCCCAGCCTCTAACATTTTGCCAAA
ATAGTCAATAGCAGTATTCTCTTCGGAGAAGCGAAAAGGCGTGGCATCGT
AAACATTTCCGTGGATTGCAGCCCCCTTTCCCGCCATCGTTTCTATCATC
ATGGCGATTGTCATTCGGGAGGGGAAGCCGTGGGGATTGAACACAATGTC
TGGAATCAAACCAGATTCCGTANATGGCAAGTCCTCTGCAGGATATTTTT
GTGAGCAAATTCCTTTCTGACCAGCTCTTGATGCAAACTTGTCTCCAATA
GTGGCAGGTCGTGGAACCCTCAGTGTGATGGCCACCATTTTT
BS10744.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4033-PA | 3390 | RpI135-RA | 2565..3390 | 842..17 | 4111 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 2664..3489 | 842..17 | 4119 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 407069..407894 | 842..17 | 4119 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:16:27 has no hits.
BS10744.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:39 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 2565..3390 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:12:34 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 2565..3390 | 17..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:44:02 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 2664..3492 | 10..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:55:04 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 2664..3492 | 10..842 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:55:04 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 407069..407897 | 10..842 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:44:02 Download gff for
BS10744.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 407069..407897 | 10..842 | 99 | | Minus |
BS10744.5prime Sequence
813 bp (801 high quality bases) assembled on 2006-04-19
> BS10744.5prime
GAAGTTATCAGTCGACATGCTGGAGGAGATGCAACAAATGAAGACCATTC
CAGTGCTGACCAATTCCCGCCCGGAGTTTAAGCAGATACCTAAAAAACTC
AGCAGGCATTTGGCCAATTTGGGAGGTCCACATGTGGATTCCTTCGACGA
GATGCTGACCGTGGGACTGGATAACTCGGCCAAACACATGATCCCGAACC
ACTGGCTGAGTCCTGCCGGCGAAAAGATTTCAATGAAAGTAGAATCAATA
TGGATAGCGAAGCCAAAGGTGCCGCAAGATGTGATTGATGTGCGCACCCG
AGAGATTTACCCCACGGACTCCAGGCAGCTCCATGTCTCCTACTCGGGAA
TGTGCTCGGTCCGATTGGGGTGGAGTGTCAATGGAGTGCAAAAGACTCCC
ATAAACATGGACCTAGGAGAAGTGCCCATCATGTTGCGCTCCAAAGCCTG
CAATCTGGGACAGGCTACTCCGGAAGAAATGGTAAAACATGGAGAGCACG
ACAGCGAGTGGGGGGGCATTTTTGTGATCCGAGGAAATGAGAAGATTGTA
CGTATGTTGATCATGACCCGGAGGAACCATCCCATATGTGTAAAACGTTC
ATCCTGGAAGGATCGTGGACAGAATTTTAGCGATTTGGGTATGTTAGTGC
AAACGGTCCGTGAGGACGAATCATCCCTGAGCAATGTAGTACATTATTTA
AACAATGGAACTGCAAAGTTTATGTTTTCTCACGTCAAGAGACTATCATA
CGTACCAGTTTGCCTGATCCTCAAGTGCCTAATGGATTATACAGATGAGG
AAATATTACACAG
BS10744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4033-PA | 3390 | RpI135-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 98..889 | 15..806 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 404535..405235 | 106..806 | 3505 | 100 | Plus |
| 2L | 23513712 | 2L | 404382..404473 | 15..106 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:59:31 has no hits.
BS10744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:40 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:12:35 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4033-PA | 1..797 | 17..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:53:19 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 98..896 | 15..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:59:26 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 98..896 | 15..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:59:26 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 404382..404473 | 15..106 | 100 | -> | Plus |
| 2L | 404536..405242 | 107..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:53:19 Download gff for
BS10744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 404382..404473 | 15..106 | 100 | -> | Plus |
| arm_2L | 404536..405242 | 107..813 | 99 | | Plus |
BS10744.complete Sequence
3422 bp assembled on 2010-05-10
GenBank Submission: KX802302
> BS10744.complete
GAAGTTATCAGTCGACATGCTGGAGGAGATGCAACAAATGAAGACCATTC
CAGTGCTGACCAATTCCCGCCCGGAGTTTAAGCAGATACCTAAAAAACTC
AGCAGGCATTTGGCCAATTTGGGAGGTCCACATGTGGATTCCTTCGACGA
GATGCTGACCGTGGGACTGGATAACTCGGCCAAACACATGATCCCGAACC
ACTGGCTGAGTCCTGCCGGCGAAAAGATTTCAATGAAAGTAGAATCAATA
TGGATAGCGAAGCCAAAGGTGCCGCAAGATGTGATTGATGTGCGCACCCG
AGAGATTTACCCCACGGACTCCAGGCAGCTCCATGTCTCCTACTCGGGAA
TGTGCTCGGTCCGATTGGGGTGGAGTGTCAATGGAGTGCAAAAGACTCCC
ATAAACATGGACCTAGGAGAAGTGCCCATCATGTTGCGCTCCAAAGCCTG
CAATCTGGGACAGGCTACTCCGGAAGAAATGGTAAAACATGGAGAGCACG
ACAGCGAGTGGGGGGGCATTTTTGTGATCCGAGGAAATGAGAAGATTGTA
CGTATGTTGATCATGACCCGGAGGAACCATCCCATATGTGTAAAACGTTC
ATCCTGGAAGGATCGTGGACAGAATTTTAGCGATTTGGGTATGTTAGTGC
AAACGGTCCGTGAGGACGAATCATCCCTGAGCAATGTAGTACATTATTTA
AACAATGGAACTGCAAAGTTTATGTTTTCTCACGTCAAGAGACTATCATA
CGTACCAGTTTGCCTGATCCTCAAGTGCCTAATGGATTATACAGATGAGG
AAATATACAACAGATTGGTGCAAGGCTACGAGTCCGACCAGTACTATGTG
TCCTGCGTGCAAGCCATGTTGAGGGAAGTTCAAAATGAAAACGTCTATAC
GCACGCCCAGTGCAAGAGCTTCATTGGCAATCTGTTCCGTGCCCGCTTCC
CAGAAGTTCCGGAATGGCAACCGGATGATGATGTCACAGACTTTATTCTT
AGGGAGCGAGTAATGATTCACCTGGATACCTATGAGGATAAGTTCCAGTT
GATTGTGTTTATGATTCAGAAGCTTTTCCAATGCGCACAGGGCAAGTACA
AAGTGGAGAACGTCGACTCAGCTATGATGCAGGAAGTGCTTCTGCCAGGC
CATCTCTATCAGAAATACCTAAGTGAGCGAGTCGAATCCTGGGTCTCGCA
AGTCCGACGTTGCCTTCAAAAAAAACTGACTTCACCTGATGCCCTAGTTA
CCAGTGCTGTGATGACGCAGTGCATGCGACAAGCAGGAGGAGTTGGCCGG
GCCATAGAGTCGTTTTTAGCAACTGGAAATATTGCGAGTCGCACTGGCCT
GGGATTAATGCAAAATAGCGGATTAGTCATTATGGCGGAGAACATTAACA
GGATGCGTTACATGTCCCACTTTCGCGCCATCCACCGTGGTTCCTATTTT
ACAACGATGAGAACCACTGAGGCGCGGCAGCTGCTCCCGGATGCCTGGGG
TTTTATTTGCCCAGTGCACACTCCTGATGGCACACCGTGCGGACTGTTAA
ATCATTTGACTCTAACTTGCGAGATTTCGATGCGTCCCGATCCCAAGTTG
GTGAAGGCCATTCCCAAGCATCTTATAGATATGGGCATGATGCCCTTGTC
AAACCGAAGATATTTGGGCGAAAAACTTTACGTCGTCTTCCTAGATGGCA
AACACTTGGGTCACATTCATCAATCAGAAGCCGAAAAAATAGTTGACGAA
TTGCGCTACGGGAAGATATTCGGCACCCTTCCCCAGATGATGGAAATCGG
CTTTATACCCTTCAAGAAGAACGGTCAGTTTCCAGGGCTTTACATTGCAA
CGGGTCCTGCCAGGATGATGAGGCCCGTTTGGAACCTAAAGTGGAAAAGG
GTGGAGTACATCGGAACACTGGAACAGCTTTATATGGAGATCGCCATCGA
TGCAAAGGAAATGTATCCTGACTTCACCACTCATTTGGAGTTGGCTAAGA
CCCACTTCATGAGCAACTTGGCCAACTTGATACCCATGCCGGACTACAAT
CAATCGCCACGTAACATGTACCAGTGTCAGATGGGAAAACAGACGATGGG
AACGCCATGCTTGAATTGGCCTAAGCAAGCGGCCAACAAGTTATACCGCC
TTCAGACGCCAGGGACTCCTCTCTTCCGACCAGTACACTACGACAACATC
CAGCTGGATGACTTTGCAATGGGCACAAATGCTATTGTAGCTGTCATTTC
CTACACGGGCTACGACATGGAAGATGCTATGATCATCAACAAGGCTGCTT
ATGAACGAGGATTCGCCTATGGAAGTATCTACAAAACAAAGTTTTTGACG
TTGGACAAGAAGAGCAGTTACTTCGCAAGGCATCCACACATGCCGGAGTT
AATAAAGCATCTTGACACGGATGGTCTTCCACATCCGGGCTCCAAATTGA
GCTATGGTTCGCCCCTGTACTGTTACTTTGACGGAGAGGTCGCCACTTAT
AAAGTTGTGAAAATGGATGAAAAGGAGGATTGCATAGTAGAGAGCATCCG
ACAGTTGGGAAGCTTCGATTTGTCGCCAAAAAAAATGGTGGCCATCACAC
TGAGGGTTCCACGACCTGCCACTATTGGAGACAAGTTTGCATCAAGAGCT
GGTCAGAAAGGAATTTGCTCACAAAAATATCCTGCAGAGGACTTGCCATT
TACGGAATCTGGTTTGATTCCAGACATTGTGTTCAATCCCCACGGCTTCC
CCTCCCGAATGACAATCGCCATGATGATAGAAACGATGGCGGGAAAGGGG
GCTGCAATCCACGGAAATGTTTACGATGCCACGCCTTTTCGCTTCTCCGA
AGAGAATACTGCTATTGACTATTTTGGCAAAATGTTAGAGGCTGGGGGTT
ACAATTACTACGGAACGGAGAGGCTGTATTCCGGCGTAGATGGCCGCGAG
ATGACTGCTGACATATTTTTTGGAGTGGTGCATTACCAGCGTCTTCGGCA
CATGGTGTTTGACAAGTGGCAAGTAAGATCTACGGGAGCGGTGGAAGCTC
GGACCCATCAGCCAATTAAGGGCAGAAAACGCGGTGGAGGCGTCAGATTC
GGTGAGATGGAACGGGATGCTTTGATCTCTCACGGTGCTGCTTTCCTGCT
GCAGGATCGCTTGTTCCACAACTCCGATAAGACGCACACCCTGGTGTGCC
ACAAGTGCGGCTCCATTCTGGCGCCTCTGCAACGCATTGTTAAGCGAAAT
GAGACGGGAGGACTCTCTTCTCAGCCAGATACGTGTCGCTTGTGCGGGGA
TAACAGTTCTGTATCGATGATCGAGATACCATTCTCTTTTAAGTATCTGG
TTACCGAATTGAGTTCGGTCAACATTAATGCGAGATTTAAGTTAAATGAA
ATTTGAAAGCTTTCTAGACCAT
BS10744.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3390 | CG4033-PA | 1..3390 | 17..3406 | 16935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-RA | 3564 | CG4033-RA | 98..3489 | 15..3406 | 16945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 406093..407894 | 1605..3406 | 9010 | 100 | Plus |
| 2L | 23513712 | 2L | 404535..406036 | 106..1607 | 7495 | 99.9 | Plus |
| 2L | 23513712 | 2L | 404382..404473 | 15..106 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:55:21 has no hits.
BS10744.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:29 Download gff for
BS10744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 99..3487 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:01 Download gff for
BS10744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 100..3488 | 17..3405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:31 Download gff for
BS10744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpI135-RA | 100..3488 | 17..3405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:31 Download gff for
BS10744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 404384..404473 | 17..106 | 100 | -> | Plus |
| 2L | 404536..406035 | 107..1606 | 99 | -> | Plus |
| 2L | 406095..407893 | 1607..3405 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:01 Download gff for
BS10744.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 404384..404473 | 17..106 | 100 | -> | Plus |
| arm_2L | 404536..406035 | 107..1606 | 99 | -> | Plus |
| arm_2L | 406095..407893 | 1607..3405 | 100 | | Plus |
BS10744.pep Sequence
Translation from 16 to 3405
> BS10744.pep
MLEEMQQMKTIPVLTNSRPEFKQIPKKLSRHLANLGGPHVDSFDEMLTVG
LDNSAKHMIPNHWLSPAGEKISMKVESIWIAKPKVPQDVIDVRTREIYPT
DSRQLHVSYSGMCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQA
TPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDR
GQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPVCL
ILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCK
SFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMI
QKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCL
QKKLTSPDALVTSAVMTQCMRQAGGVGRAIESFLATGNIASRTGLGLMQN
SGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPV
HTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLSNRRYL
GEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEIGFIPFK
KNGQFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMY
PDFTTHLELAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLN
WPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYD
MEDAMIINKAAYERGFAYGSIYKTKFLTLDKKSSYFARHPHMPELIKHLD
TDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESIRQLGSF
DLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGL
IPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAI
DYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDK
WQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLF
HNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVS
MIEIPFSFKYLVTELSSVNINARFKLNEI*
BS10744.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpI135-PA | 1129 | CG4033-PA | 1..1129 | 1..1129 | 5989 | 100 | Plus |
| RpIII128-PA | 1137 | CG8344-PA | 51..1128 | 39..1120 | 967 | 26.7 | Plus |
| RpII140-PB | 1176 | CG3180-PB | 45..1172 | 40..1123 | 907 | 27.3 | Plus |
| RpII140-PA | 1176 | CG3180-PA | 45..1172 | 40..1123 | 907 | 27.3 | Plus |
