Clone Sequence Records
BS10755.3prime Sequence
894 bp (863 high quality bases) assembled on 2006-04-19
> BS10755.3prime
ATGGTCTAGAAAGCTTTTAATCAACTCCAGCAAATCCTTGGCTGCCCTCG
ATGGCCTTGATCAGTTTGTCCTTCAGTTGAAGGTAGCCTTCATAGGGTGG
CAGGTCCAGGCGATTGAAACAGGTATGTGCCCTTGGAAAGTTATTAGGAG
TGCCCCACTTTTCGATAGTAAACATCTGGGGGCCATTTGAGCCGTACAGC
TCCTTGAAACCGTTCATGGGCACGCGTGAAGTGCCCGTAACAAATTGCAG
CAGACGAGAACGCATCTCGTTGGAGAAGGAAAGTACAGCCCTCCAGAACC
ACTGAATAATAATATGATTCATGTGGTAGTCGCCCTTGTACAGAGTATTC
TCGCGCCAATCCTTCACATCGATGTTCTGTATGCCACACATCAGTAGCTC
CAGTTCGTGCTCGTCGAAAATCTTAATAAGATTCAGAGGAATTATCGATC
CAAAACCATCAAGGAAGGACGACATCTGTTCCTTGACACGTGCCACAAAG
CGCCATTCGATAACCAATTTAATGTATTCATCCTTGTTTTCGTTAGTCAC
GTCTATGTTGGCACCGCCGGGCTTTAGTTCGTGCTGACTCTTCTGGCCAA
AAACGTCTTCATCCAGGCAGAAAGTCAGTTCCAGAATGCGTGGATCGTTC
TCCTTAATCCACATCAGCGAGTTGTAGTACTCCGTGTCCACAGACTCCAT
GTCCTTTAGGTCAATCGGCTTCTGCAGCATCATCTTGTAGAATGGACGAA
TGAAGAAGGCATCTAGCAGCTTTCCATGATACACAGCCATGCCCGCAATA
CGGCCAATGAATTTAAAGTAACTTAAATGCTCCTCGTTGCACAAACCACT
ACCATTGTTTATCTGAAGCGTGTAGTTGTCCATGGGCGAGTACT
BS10755.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7555-PD | 2382 | Nedd4-RD | 1505..2382 | 894..17 | 4340 | 99.7 | Minus |
| CG7555-PC | 2505 | Nedd4-RC | 1628..2505 | 894..17 | 4340 | 99.7 | Minus |
| CG7555-PA | 3024 | Nedd4-RA | 2147..3024 | 894..17 | 4340 | 99.7 | Minus |
| CG7555-PB | 2871 | Nedd4-RB | 1994..2871 | 894..17 | 4340 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RM | 4146 | CG42279-RM | 2503..3380 | 894..17 | 4360 | 99.8 | Minus |
| Nedd4-RL | 4164 | CG42279-RL | 2521..3398 | 894..17 | 4360 | 99.8 | Minus |
| Nedd4-RK | 3651 | CG42279-RK | 2008..2885 | 894..17 | 4360 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17545035..17545433 | 518..120 | 1995 | 100 | Minus |
| 3L | 28110227 | 3L | 17544677..17544970 | 812..519 | 1470 | 100 | Minus |
| 3L | 28110227 | 3L | 17545507..17545610 | 120..17 | 505 | 99 | Minus |
| 3L | 28110227 | 3L | 17544536..17544617 | 894..813 | 395 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:22:23 has no hits.
BS10755.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:55 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-PD | 1505..2382 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:12:59 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7555-PB | 1994..2871 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:17:37 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 2008..2885 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:59:22 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 2008..2885 | 17..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:59:22 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17544536..17544617 | 813..894 | 98 | -> | Minus |
| 3L | 17544677..17544970 | 519..812 | 100 | -> | Minus |
| 3L | 17545035..17545433 | 120..518 | 100 | -> | Minus |
| 3L | 17545508..17545610 | 17..119 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:17:37 Download gff for
BS10755.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17537636..17537717 | 813..894 | 98 | -> | Minus |
| arm_3L | 17537777..17538070 | 519..812 | 100 | -> | Minus |
| arm_3L | 17538135..17538533 | 120..518 | 100 | -> | Minus |
| arm_3L | 17538608..17538710 | 17..119 | 99 | | Minus |
BS10755.5prime Sequence
868 bp (826 high quality bases) assembled on 2006-04-19
> BS10755.5prime
GAAGTTATCAGTCGACATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGG
CGGCCCTTCCCGTCCCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTG
CCACGCCCGCCGCCCCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCA
AACGCGCCAGGAATTTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAG
CAGTGAACGACTCTGGGGACTCGTGTCACCTGCGAATCGTCGTACTCACC
GGTCAGTCGCTGGCCAAAAAGGATATATTCGGCGCCAGCGACCCGTATGT
CAGAATCGATTTGAACACAATCAACGGTGATATTAATATTGACTCTGTTT
TGACGAAGACCAAAAAGAAGACACTGAATCCAACCTGGAATGAAGAGTTC
ATATTTAGAGTTAAACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGA
CGAGAATCGCCTGACACGCGACGACTTCCTGGGCATGGTGGAGCTGACCC
TGGTGAATCTGCCTACCGAGCAGGAGGGTCGCACCATCGGAGAACAAAGC
TACACTCTGCGCCCGCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGG
CACACTGCGCATCTACCACGCCTTTATCCGGGAGACGCGGGAGCAGAGCG
AGCCATCTAGTGGCAATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACC
AATGCCGGTGAGACGTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCA
CGATGCCCTACCCGCTGGATGGGAAGAACGCCAGGATGCCAACGGGCGCA
CGTACTATGTGAATCACACGGCGAGGACGACGCAATGGGATAGGCCTACT
GTCTTAAACAGCCACAGT
BS10755.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7555-PC | 2505 | Nedd4-RC | 1..852 | 17..868 | 4210 | 99.7 | Plus |
| CG7555-PA | 3024 | Nedd4-RA | 1..852 | 17..868 | 4210 | 99.7 | Plus |
| CG7555-PB | 2871 | Nedd4-RB | 76..738 | 206..868 | 3265 | 99.6 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 76..440 | 206..570 | 1775 | 99.4 | Plus |
| CG7555-PD | 2382 | Nedd4-RD | 440..729 | 579..868 | 1450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..1232 | 17..868 | 4230 | 99.8 | Plus |
| Nedd4-RJ | 4454 | CG42279-RJ | 381..1232 | 17..868 | 4230 | 99.8 | Plus |
| Nedd4-RH | 4131 | CG42279-RH | 381..1232 | 17..868 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17530847..17531035 | 17..205 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 410..579 | 835 | 99.4 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 579..727 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 17540901..17541026 | 727..852 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 286..370 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 205..288 | 405 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17539454..17539496 | 369..411 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:00:32 has no hits.
BS10755.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:48:56 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:00 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7555-PA | 1..852 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 11:05:03 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1232 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:50:45 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 374..1232 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:50:45 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17530840..17531035 | 9..205 | 97 | -> | Plus |
| 3L | 17538662..17538744 | 206..288 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 289..370 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 371..409 | 100 | -> | Plus |
| 3L | 17539567..17539736 | 410..579 | 99 | -> | Plus |
| 3L | 17540691..17540838 | 580..727 | 100 | -> | Plus |
| 3L | 17540902..17541026 | 728..852 | 100 | -> | Plus |
| 3L | 17541301..17541316 | 853..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 11:05:03 Download gff for
BS10755.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17523940..17524135 | 9..205 | 97 | -> | Plus |
| arm_3L | 17531762..17531844 | 206..288 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 289..370 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 371..409 | 100 | -> | Plus |
| arm_3L | 17532667..17532836 | 410..579 | 99 | -> | Plus |
| arm_3L | 17534002..17534126 | 728..852 | 100 | -> | Plus |
| arm_3L | 17534401..17534416 | 853..868 | 100 | | Plus |
| arm_3L | 17533791..17533938 | 580..727 | 100 | -> | Plus |
BS10755.complete Sequence
2537 bp assembled on 2007-12-11
GenBank Submission: FJ636730
> BS10755.complete
GAAGTTATCAGTCGACATGTCGGCACGTTCCAGCGGCTTGGTGGCCGCGG
CGGCCCTTCCCGTCCCGTCGTCTTCTTCCTCGGTGGCCGGCGGCGACGTG
CCACGCCCGCCGCCCCGCCGGCGAGCGGCCTCTGTTGCGGGACAACAGCA
AACGCGCCAGGAATTTGGAAATGGTTACACTCCTCGCAGATCGTTGGCAG
CAGTGAACGACTCTGGGGACTCGTGTCACCTGCGAATCGTCGTACTCACC
GGTCAGTCGCTGGCCAAAAAGGATATATTCGGCGCCAGCGACCCGTATGT
CAGAATCGATTTGAACACAATCAACGGTGATATTAATATTGACTCTGTTT
TGACGAAGACCAAAAAGAAGACACTGAATCCAACCTGGAATGAAGAGTTC
ATATTTAGAGTTAAACCGTCTGAGCATAAGCTTGTGTTTCAAGTATTTGA
CGAGAATCGCCTGACACGCGACGACTTCCTGGGCATGGTGGAGCTGACCC
TGGTGAATCTGCCTACCGAGCAGGAGGGTCGCACCATCGGAGAACAAAGC
TACACTCTGCGCCCGCGCAGGTCAGTAGGCGCCAAATCCCGCATCAAGGG
CACACTGCGCATCTACCACGCCTTTATCCGGGAGACGCGGGAGCAGAGCG
AGCCATCTAGTGGCAATAGCGATGGCGAGTGGGAGCACGTTGAGGCCACC
AATGCCGGTGAGACGTCTGCCCAGCCGCACCCCTTTCCTACTGGTGGCCA
CGATGCCCTACCCGCTGGATGGGAAGAACGCCAGGATGCCAACGGGCGCA
CGTACTATGTGAATCACACGGCGAGGACGACGCAATGGGATAGGCCTACT
GTCTTAAACAGCCACAGTAGCCAATCCACTGACGACCAGTTGGCCTCGGA
TTTCCAGAGACGTTTCCACATCAGCGTGGACGACACGGAGTCAGGACGTT
CGGCGAATGAAGACACCGATCACACAGACAGCCACAATCCCTCTGACATC
TCAGCTCCGTCCACACGACGCAATTCCGAGGAAGACAACGCGGCTGTGCC
TCCCATGGAACAAAATACTGGTGGTGAAGAGGAACCCCTGCCACCGCGCT
GGTCGATGCAGGTAGCCCCCAACGGAAGGACATTCTTCATTGATCATGCG
TCCCGGAGGACTACTTGGATAGACCCGCGCAACGGACGGGCCAGCCCTAT
GCCAAATCAAACTCGTCGCGTCGAGGACGACCTGGGTCCTTTACCAGAGG
GCTGGGAGGAGCGAGTACACACCGACGGACGCGTATTCTATATAGATCAT
AACACGCGAACTACGCAGTGGGAAGATCCTCGCTTGTCCAATCCAAATAT
TGCCGGTCAGGCTGTGCCCTATTCTCGAGATTACAAGCAAAAATACGAGT
ATTTCAAGAGTCACATTAGAAAGCCTACAAATGTACCAAATAAATTTGAA
ATACGTATTCGACGTACGTCGATACTGGAGGATTCTTACAGAATTATTAG
TTCGGTAACGAAGACCGATTTACTAAAGACTAAATTATGGGTAGAGTTTG
AAGGAGAAACTGGCTTAGATTATGGAGGCCTCGCAAGGGAATGGTTCTAT
TTATTATCAAAAGAAATGTTTAATCCGTACTACGGACTATTCGAGTACTC
GGCCATGGACAACTACACGCTTCAGATAAACAATGGTAGTGGTTTGTGCA
ACGAGGAGCATTTAAGTTACTTTAAATTCATTGGCCGTATTGCGGGCATG
GCTGTGTATCATGGAAAGCTGCTAGATGCCTTCTTCATTCGTCCATTCTA
CAAGATGATGCTGCAGAAGCCGATTGACCTAAAGGACATGGAGTCTGTGG
ACACGGAGTACTACAACTCGCTGATGTGGATTAAGGAGAACGATCCACGC
ATTCTGGAACTGACTTTCTGCCTGGATGAAGACGTTTTTGGCCAGAAGAG
TCAGCACGAACTAAAGCCCGGCGGTGCCAACATAGACGTGACTAACGAAA
ACAAGGATGAATACATTAAATTGGTTATCGAATGGCGCTTTGTGGCACGT
GTCAAGGAACAGATGTCGTCCTTCCTTGATGGTTTTGGATCGATAATTCC
TCTGAATCTTATTAAGATTTTCGACGAGCACGAACTGGAGCTACTGATGT
GTGGCATACAGAACATCGATGTGAAGGATTGGCGCGAGAATACTCTGTAC
AAGGGCGACTACCACATGAATCATATTATTATTCAGTGGTTCTGGAGGGC
TGTACTTTCCTTCTCCAACGAGATGCGTTCTCGTCTGCTGCAATTTGTTA
CGGGCACTTCACGCGTGCCCATGAACGGTTTCAAGGAGCTGTACGGCTCA
AATGGCCCCCAGATGTTTACTATCGAAAAGTGGGGCACTCCTAATAACTT
TCCAAGGGCACATACCTGTTTCAATCGCCTGGACCTGCCACCCTATGAAG
GCTACCTTCAACTGAAGGACAAACTGATCAAGGCCATCGAGGGCAGCCAA
GGATTTGCTGGAGTTGATTAAAAGCTTTCTAGACCAT
BS10755.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:48:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 2505 | CG42279-PK | 1..2505 | 17..2521 | 12450 | 99.8 | Plus |
| Nedd4-RE | 2382 | CG42279-PE | 76..2382 | 206..2521 | 11335 | 99.4 | Plus |
| Nedd4-RM | 3000 | CG42279-PM | 1432..3000 | 953..2521 | 7800 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:48:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-RK | 3651 | CG42279-RK | 381..2885 | 17..2521 | 12450 | 99.8 | Plus |
| Nedd4-RE | 3384 | CG42279-RE | 312..2618 | 206..2521 | 11335 | 99.4 | Plus |
| Nedd4-RM | 4146 | CG42279-RM | 1812..3380 | 953..2521 | 7800 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17545035..17545433 | 2020..2418 | 1995 | 100 | Plus |
| 3L | 28110227 | 3L | 17544677..17544970 | 1726..2019 | 1470 | 100 | Plus |
| 3L | 28110227 | 3L | 17543764..17544001 | 1064..1301 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 17530847..17531035 | 17..205 | 945 | 100 | Plus |
| 3L | 28110227 | 3L | 17539567..17539736 | 410..579 | 835 | 99.4 | Plus |
| 3L | 28110227 | 3L | 17544459..17544617 | 1567..1725 | 795 | 100 | Plus |
| 3L | 28110227 | 3L | 17540690..17540838 | 579..727 | 745 | 100 | Plus |
| 3L | 28110227 | 3L | 17544256..17544397 | 1427..1568 | 695 | 99.3 | Plus |
| 3L | 28110227 | 3L | 17540901..17541026 | 727..852 | 630 | 100 | Plus |
| 3L | 28110227 | 3L | 17544060..17544184 | 1302..1426 | 610 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17543504..17543612 | 955..1063 | 545 | 100 | Plus |
| 3L | 28110227 | 3L | 17541301..17541403 | 853..955 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 17545507..17545610 | 2418..2521 | 505 | 99 | Plus |
| 3L | 28110227 | 3L | 17538811..17538895 | 286..370 | 425 | 100 | Plus |
| 3L | 28110227 | 3L | 17538661..17538744 | 205..288 | 405 | 98.8 | Plus |
| 3L | 28110227 | 3L | 17539454..17539496 | 369..411 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:47:59 has no hits.
BS10755.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:13:33 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 1..941 | 17..957 | 99 | <- | Plus |
| Nedd4-RH | 1422..2985 | 958..2521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:36:34 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 379..1319 | 17..957 | 99 | <- | Plus |
| Nedd4-RH | 1800..3361 | 958..2519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:40 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 381..2883 | 17..2519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:40:08 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RH | 379..1319 | 17..957 | 99 | <- | Plus |
| Nedd4-RH | 1800..3361 | 958..2519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:26:38 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nedd4-RK | 381..2883 | 17..2519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:26:38 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17544256..17544397 | 1427..1568 | 99 | -> | Plus |
| 3L | 17544461..17544617 | 1569..1725 | 100 | -> | Plus |
| 3L | 17544677..17544970 | 1726..2019 | 100 | -> | Plus |
| 3L | 17543764..17544001 | 1064..1301 | 100 | -> | Plus |
| 3L | 17530847..17531035 | 17..205 | 100 | -> | Plus |
| 3L | 17538662..17538744 | 206..288 | 98 | -> | Plus |
| 3L | 17538814..17538895 | 289..370 | 100 | -> | Plus |
| 3L | 17539456..17539494 | 371..409 | 100 | -> | Plus |
| 3L | 17539567..17539736 | 410..579 | 99 | -> | Plus |
| 3L | 17540691..17540838 | 580..727 | 100 | -> | Plus |
| 3L | 17540902..17541026 | 728..852 | 100 | -> | Plus |
| 3L | 17541301..17541403 | 853..955 | 100 | -> | Plus |
| 3L | 17543505..17543612 | 956..1063 | 100 | -> | Plus |
| 3L | 17544060..17544184 | 1302..1426 | 99 | -> | Plus |
| 3L | 17545035..17545433 | 2020..2418 | 100 | -> | Plus |
| 3L | 17545508..17545608 | 2419..2519 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:40 Download gff for
BS10755.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17537160..17537284 | 1302..1426 | 99 | -> | Plus |
| arm_3L | 17537356..17537497 | 1427..1568 | 99 | -> | Plus |
| arm_3L | 17537561..17537717 | 1569..1725 | 100 | -> | Plus |
| arm_3L | 17537777..17538070 | 1726..2019 | 100 | -> | Plus |
| arm_3L | 17523947..17524135 | 17..205 | 100 | -> | Plus |
| arm_3L | 17531762..17531844 | 206..288 | 98 | -> | Plus |
| arm_3L | 17531914..17531995 | 289..370 | 100 | -> | Plus |
| arm_3L | 17532556..17532594 | 371..409 | 100 | -> | Plus |
| arm_3L | 17532667..17532836 | 410..579 | 99 | -> | Plus |
| arm_3L | 17533791..17533938 | 580..727 | 100 | -> | Plus |
| arm_3L | 17534002..17534126 | 728..852 | 100 | -> | Plus |
| arm_3L | 17534401..17534503 | 853..955 | 100 | -> | Plus |
| arm_3L | 17536605..17536712 | 956..1063 | 100 | -> | Plus |
| arm_3L | 17536864..17537101 | 1064..1301 | 100 | -> | Plus |
| arm_3L | 17538135..17538533 | 2020..2418 | 100 | -> | Plus |
| arm_3L | 17538608..17538708 | 2419..2519 | 99 | | Plus |
BS10755.pep Sequence
Translation from 16 to 2520
> BS10755.pep
MSARSSGLVAAAALPVPSSSSSVAGGDVPRPPPRRRAASVAGQQQTRQEF
GNGYTPRRSLAAVNDSGDSCHLRIVVLTGQSLAKKDIFGASDPYVRIDLN
TINGDINIDSVLTKTKKKTLNPTWNEEFIFRVKPSEHKLVFQVFDENRLT
RDDFLGMVELTLVNLPTEQEGRTIGEQSYTLRPRRSVGAKSRIKGTLRIY
HAFIRETREQSEPSSGNSDGEWEHVEATNAGETSAQPHPFPTGGHDALPA
GWEERQDANGRTYYVNHTARTTQWDRPTVLNSHSSQSTDDQLASDFQRRF
HISVDDTESGRSANEDTDHTDSHNPSDISAPSTRRNSEEDNAAVPPMEQN
TGGEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNGRASPMPNQTR
RVEDDLGPLPEGWEERVHTDGRVFYIDHNTRTTQWEDPRLSNPNIAGQAV
PYSRDYKQKYEYFKSHIRKPTNVPNKFEIRIRRTSILEDSYRIISSVTKT
DLLKTKLWVEFEGETGLDYGGLAREWFYLLSKEMFNPYYGLFEYSAMDNY
TLQINNGSGLCNEEHLSYFKFIGRIAGMAVYHGKLLDAFFIRPFYKMMLQ
KPIDLKDMESVDTEYYNSLMWIKENDPRILELTFCLDEDVFGQKSQHELK
PGGANIDVTNENKDEYIKLVIEWRFVARVKEQMSSFLDGFGSIIPLNLIK
IFDEHELELLMCGIQNIDVKDWRENTLYKGDYHMNHIIIQWFWRAVLSFS
NEMRSRLLQFVTGTSRVPMNGFKELYGSNGPQMFTIEKWGTPNNFPRAHT
CFNRLDLPPYEGYLQLKDKLIKAIEGSQGFAGVD*
BS10755.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nedd4-PK | 834 | CG42279-PK | 1..834 | 1..834 | 4449 | 100 | Plus |
| Nedd4-PE | 793 | CG7555-PD | 26..793 | 64..834 | 4106 | 99.5 | Plus |
| Nedd4-PG | 931 | CG42279-PG | 1..931 | 1..834 | 3768 | 80.6 | Plus |
| Nedd4-PL | 1005 | CG42279-PL | 423..1005 | 244..834 | 2839 | 90.4 | Plus |
| Nedd4-PJ | 1007 | CG42279-PJ | 425..1007 | 244..834 | 2839 | 90.4 | Plus |
| Nedd4-PL | 1005 | CG42279-PL | 1..350 | 1..353 | 1595 | 89.4 | Plus |
