Clone BS10774 Report

Search the DGRC for BS10774

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG11714-RA
Protein status:BS10774.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10774.3prime Sequence

474 bp (458 high quality bases) assembled on 2006-04-19

> BS10774.3prime
ATGGTCTAGAAAGCTTTTAGACGTCACTGTGTGCTGACCAGGCGCGATAT
CGACGGATGGGTCGGGAAAGGTAATGCGAGGTAACCGAAGAAGCCGTTGG
TTCGTCGCGCATTAAGCTTCCTCCCATATGAACTATGCGTCGGGATTCGG
AAGGTAGGGGGGGCTTCTGTTCCGTGGTCAATGCCATCTTCAGCTGCAGT
TCATCTTTGGCCGTAACGCAGTTCTTGGCGATTTGATACATATGCTCGTA
CTTCTCAGCCAGGCTAAGGAAATTGGATTTGCCGGGTCCATCGTAGAATT
CCTTGGGCGAAAGTTTGCCAAAATCAATCAGTGCAAGTAGATCGCTGACA
AAACTTGCCTTCTTATTTGGAACGGCAAAACTGCATTCAGTTTTGAGCGG
AACGCAGCTAGTGGACGGAAGTTCCGATTCTTGATTTTCCACTTCGTTGG
TGGTGGTGATGNGTGGTGGTGTTG

BS10774.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PA 1152 CG11714-RA 708..1152 461..17 2225 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 841..1297 474..17 2265 99.8 Minus
CG11714-RC 1614 CG11714-RC 805..1261 474..17 2265 99.8 Minus
CG11714-RA 1650 CG11714-RA 841..1297 474..17 2265 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521366..11521822 17..474 2240 99.8 Plus
Blast to na_te.dros performed on 2015-02-11 11:38:22 has no hits.

BS10774.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:34 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 696..1152 17..474 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:53 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 696..1152 17..474 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:58:50 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 841..1300 12..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:09 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 841..1300 12..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:09 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11521363..11521822 12..474 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:58:50 Download gff for BS10774.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514463..11514922 12..474 99   Plus

BS10774.5prime Sequence

797 bp (796 high quality bases) assembled on 2006-04-19

> BS10774.5prime
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTG

BS10774.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PA 1152 CG11714-RA 1..781 17..797 3905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 146..926 17..797 3905 100 Plus
CG11714-RA 1650 CG11714-RA 146..926 17..797 3905 100 Plus
Fuca-RC 3513 CG6128-RC 146..926 17..797 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:16:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521737..11522507 797..27 3855 100 Minus
Blast to na_te.dros performed on 2015-02-02 13:16:40 has no hits.

BS10774.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:35 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 1..781 17..797 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:55 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-PA 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:18 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..926 11..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:19 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
Fuca-RC 141..926 11..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:19 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11521737..11522513 23..797 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:18 Download gff for BS10774.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514837..11515613 23..797 99   Minus

BS10774.complete Sequence

1184 bp assembled on 2006-11-01

GenBank Submission: FJ636731

> BS10774.complete
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAATCCAATTTCCTTAGCCTGGCTGAGAAGTACGAGCATATGTATC
AAATCGCCAAGAACTGCGTTACGGCCAAAGATGAACTGCAGCTGAAGATG
GCATTGACCACGGAACAGAAGCCCCCCCTACCTTCCGAATCCCGACGCAT
AGTTCATATGGGAGGAAGCTTAATGCGCGACGAACCAACGGCTTCTTCGG
TTACCTCGCATTACCTTTCCCGACCCATCCGTCGATATCGCGCCTGGTCA
GCACACAGTGACGTCTAAAAGCTTTCTAGACCAT

BS10774.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 1152 CG11714-PD 1..1152 17..1168 5760 100 Plus
CG11714-RA 1152 CG11714-PA 1..1152 17..1168 5760 100 Plus
CG11714-RC 1116 CG11714-PC 11..1116 63..1168 5530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-RD 3514 CG11714-RD 146..1297 17..1168 5760 100 Plus
CG11714-RA 1650 CG11714-RA 146..1297 17..1168 5760 100 Plus
Fuca-RC 3513 CG6128-RC 146..1297 17..1168 5760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11521366..11522507 1168..27 5710 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:42:48 has no hits.

BS10774.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:08 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 1..1152 17..1168 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:39 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..1300 11..1173 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:25 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 146..1295 17..1166 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:08 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
CG11714-RA 141..1300 11..1173 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:53 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
Fuca-RC 146..1295 17..1166 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:53 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11521368..11522513 23..1166 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:25 Download gff for BS10774.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11514468..11515613 23..1166 99   Minus

BS10774.pep Sequence

Translation from 16 to 1167

> BS10774.pep
MSIWPIRTLPNSKMRSCMMELGRTNRHTDCTFIIEDESGGSQSFPCHKLL
FSCASDVFDRMLYGDYIESTSGVVRLNDVQPDIFEKFRDYVYGYECDKLQ
KYDFDTLIRLCEFANKYLVQSLEEDCVKDLLIRKNTFDMGELLRLFQCAH
RMNRKSLINQIAWELKCTFKSTLDHSGVYEFNCEVFKHYIEVIASKISEA
DRFRLLEMYLKYNGIEELESAGQVDSQDATEANTTTITTTNEVENQESEL
PSTSCVPLKTECSFAVPNKKASFVSDLLALIDFGKLSPKEFYDGPGKSNF
LSLAEKYEHMYQIAKNCVTAKDELQLKMALTTEQKPPLPSESRRIVHMGG
SLMRDEPTASSVTSHYLSRPIRRYRAWSAHSDV*

BS10774.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG11714-PD 383 CG11714-PD 1..383 1..383 2015 100 Plus
CG11714-PA 383 CG11714-PA 1..383 1..383 2015 100 Plus
CG11714-PC 371 CG11714-PC 5..371 17..383 1930 100 Plus
CG43120-PA 286 CG43120-PA 30..250 43..316 246 24.5 Plus
CG17068-PA 694 CG17068-PA 22..228 24..231 157 28 Plus