Clone Sequence Records
BS10774.3prime Sequence
474 bp (458 high quality bases) assembled on 2006-04-19
> BS10774.3prime
ATGGTCTAGAAAGCTTTTAGACGTCACTGTGTGCTGACCAGGCGCGATAT
CGACGGATGGGTCGGGAAAGGTAATGCGAGGTAACCGAAGAAGCCGTTGG
TTCGTCGCGCATTAAGCTTCCTCCCATATGAACTATGCGTCGGGATTCGG
AAGGTAGGGGGGGCTTCTGTTCCGTGGTCAATGCCATCTTCAGCTGCAGT
TCATCTTTGGCCGTAACGCAGTTCTTGGCGATTTGATACATATGCTCGTA
CTTCTCAGCCAGGCTAAGGAAATTGGATTTGCCGGGTCCATCGTAGAATT
CCTTGGGCGAAAGTTTGCCAAAATCAATCAGTGCAAGTAGATCGCTGACA
AAACTTGCCTTCTTATTTGGAACGGCAAAACTGCATTCAGTTTTGAGCGG
AACGCAGCTAGTGGACGGAAGTTCCGATTCTTGATTTTCCACTTCGTTGG
TGGTGGTGATGNGTGGTGGTGTTG
BS10774.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PA | 1152 | CG11714-RA | 708..1152 | 461..17 | 2225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 841..1297 | 474..17 | 2265 | 99.8 | Minus |
CG11714-RC | 1614 | CG11714-RC | 805..1261 | 474..17 | 2265 | 99.8 | Minus |
CG11714-RA | 1650 | CG11714-RA | 841..1297 | 474..17 | 2265 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521366..11521822 | 17..474 | 2240 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:38:22 has no hits.
BS10774.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:34 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 696..1152 | 17..474 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:53 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 696..1152 | 17..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:58:50 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 841..1300 | 12..474 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:58:09 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 841..1300 | 12..474 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:58:09 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521363..11521822 | 12..474 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:58:50 Download gff for
BS10774.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514463..11514922 | 12..474 | 99 | | Plus |
BS10774.5prime Sequence
797 bp (796 high quality bases) assembled on 2006-04-19
> BS10774.5prime
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTG
BS10774.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PA | 1152 | CG11714-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 13:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 146..926 | 17..797 | 3905 | 100 | Plus |
CG11714-RA | 1650 | CG11714-RA | 146..926 | 17..797 | 3905 | 100 | Plus |
Fuca-RC | 3513 | CG6128-RC | 146..926 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 13:16:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521737..11522507 | 797..27 | 3855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 13:16:40 has no hits.
BS10774.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:35 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:55 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-PA | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:08:18 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..926 | 11..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:47:19 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RC | 141..926 | 11..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:47:19 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521737..11522513 | 23..797 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:08:18 Download gff for
BS10774.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514837..11515613 | 23..797 | 99 | | Minus |
BS10774.complete Sequence
1184 bp assembled on 2006-11-01
GenBank Submission: FJ636731
> BS10774.complete
GAAGTTATCAGTCGACATGAGTATCTGGCCCATTCGAACACTACCAAATT
CCAAAATGCGTAGTTGCATGATGGAGCTCGGTCGCACCAATCGCCACACG
GATTGCACATTTATAATTGAGGATGAGAGCGGTGGCAGTCAATCGTTTCC
CTGCCACAAATTGCTATTCAGCTGCGCCTCCGATGTGTTCGATCGCATGC
TCTATGGCGACTACATTGAGTCTACTAGCGGAGTTGTCAGACTAAATGAT
GTACAACCGGATATATTTGAGAAATTCCGAGACTATGTCTACGGCTATGA
GTGCGATAAACTGCAGAAGTACGACTTTGATACTCTGATTCGCCTCTGTG
AGTTTGCTAACAAATATCTGGTGCAATCTCTCGAAGAGGACTGTGTAAAG
GATTTGCTGATACGCAAGAACACTTTTGACATGGGAGAGTTACTTCGTCT
ATTCCAGTGTGCGCATCGCATGAATCGCAAGTCGTTAATAAATCAGATAG
CCTGGGAGCTAAAGTGCACCTTCAAGAGCACCTTGGACCACTCTGGCGTA
TACGAATTCAATTGCGAGGTATTTAAACACTATATCGAAGTGATTGCTAG
CAAAATATCGGAGGCAGATCGTTTCCGTCTGCTGGAAATGTATCTAAAAT
ATAATGGTATCGAGGAATTGGAAAGCGCGGGGCAAGTGGATAGCCAGGAT
GCAACTGAAGCCAACACCACCACCATCACCACCACCAACGAAGTGGAAAA
TCAAGAATCGGAACTTCCGTCCACTAGCTGCGTTCCGCTCAAAACTGAAT
GCAGTTTTGCCGTTCCAAATAAGAAGGCAAGTTTTGTCAGCGATCTACTT
GCACTGATTGATTTTGGCAAACTTTCGCCCAAGGAATTCTACGATGGACC
CGGCAAATCCAATTTCCTTAGCCTGGCTGAGAAGTACGAGCATATGTATC
AAATCGCCAAGAACTGCGTTACGGCCAAAGATGAACTGCAGCTGAAGATG
GCATTGACCACGGAACAGAAGCCCCCCCTACCTTCCGAATCCCGACGCAT
AGTTCATATGGGAGGAAGCTTAATGCGCGACGAACCAACGGCTTCTTCGG
TTACCTCGCATTACCTTTCCCGACCCATCCGTCGATATCGCGCCTGGTCA
GCACACAGTGACGTCTAAAAGCTTTCTAGACCAT
BS10774.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 1152 | CG11714-PD | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG11714-RA | 1152 | CG11714-PA | 1..1152 | 17..1168 | 5760 | 100 | Plus |
CG11714-RC | 1116 | CG11714-PC | 11..1116 | 63..1168 | 5530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:42:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-RD | 3514 | CG11714-RD | 146..1297 | 17..1168 | 5760 | 100 | Plus |
CG11714-RA | 1650 | CG11714-RA | 146..1297 | 17..1168 | 5760 | 100 | Plus |
Fuca-RC | 3513 | CG6128-RC | 146..1297 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11521366..11522507 | 1168..27 | 5710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:42:48 has no hits.
BS10774.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:08 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 1..1152 | 17..1168 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:39 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..1300 | 11..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:25 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 146..1295 | 17..1166 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:08 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11714-RA | 141..1300 | 11..1173 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:06:53 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fuca-RC | 146..1295 | 17..1166 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:06:53 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11521368..11522513 | 23..1166 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:25 Download gff for
BS10774.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11514468..11515613 | 23..1166 | 99 | | Minus |
BS10774.pep Sequence
Translation from 16 to 1167
> BS10774.pep
MSIWPIRTLPNSKMRSCMMELGRTNRHTDCTFIIEDESGGSQSFPCHKLL
FSCASDVFDRMLYGDYIESTSGVVRLNDVQPDIFEKFRDYVYGYECDKLQ
KYDFDTLIRLCEFANKYLVQSLEEDCVKDLLIRKNTFDMGELLRLFQCAH
RMNRKSLINQIAWELKCTFKSTLDHSGVYEFNCEVFKHYIEVIASKISEA
DRFRLLEMYLKYNGIEELESAGQVDSQDATEANTTTITTTNEVENQESEL
PSTSCVPLKTECSFAVPNKKASFVSDLLALIDFGKLSPKEFYDGPGKSNF
LSLAEKYEHMYQIAKNCVTAKDELQLKMALTTEQKPPLPSESRRIVHMGG
SLMRDEPTASSVTSHYLSRPIRRYRAWSAHSDV*
BS10774.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11714-PD | 383 | CG11714-PD | 1..383 | 1..383 | 2015 | 100 | Plus |
CG11714-PA | 383 | CG11714-PA | 1..383 | 1..383 | 2015 | 100 | Plus |
CG11714-PC | 371 | CG11714-PC | 5..371 | 17..383 | 1930 | 100 | Plus |
CG43120-PA | 286 | CG43120-PA | 30..250 | 43..316 | 246 | 24.5 | Plus |
CG17068-PA | 694 | CG17068-PA | 22..228 | 24..231 | 157 | 28 | Plus |