Clone Sequence Records
BS10775.3prime Sequence
894 bp (805 high quality bases) assembled on 2006-04-19
> BS10775.3prime
ATGGTCTAGAAAGCTTCTACGGCTCCTGACGCCCCAGCAATCCGTACACG
ATGCGCCGTCGATTCTGCACCTCCGCTCTCATGGATTCCGTATAGGGATC
GAAAGATAACAGACGTTTCTTCCGCCGGAAGATGCCCTCCTTCCGCATAA
TGGCGCACCGCATCAGTTGCTCGTTGATGGGGAACTGCAGGAAGTCCAGA
ATGGAGCGCAGCTCCCGCTCCGTATGGTGGACCAGGTCGTCGTAGAACAC
CACCTTGATGCTGCCCGTGAAGTTGCGCGCCCAGCTGAGGTTCATCATCT
CCCAGCCCTTGAGCTTGTTGCTCACGAATTGCTGCCAGTATTTTCCCTTG
GTGCGCTTGTAGCGATCCGGTGATGCGAATCCGATGTGACCGCCACTCTG
GCGATTGAACTCCGCGATGATCGCTTTCTCCGGATCGCGGACGAGAAGAA
TTGCTTTCGAGAAGGGCGCCCACGCTTTGCTGCCCCACTCGTGGGTCTTC
ACCAATAATACTGAACTGTTGCAGACGTTCTCCGCCGGAAAGCCGGTCTT
CAGCAGGCCGTAGTCCTTGTAGATGCTGCCCGTCAGGATGCCGGTGGCCT
GCTGGAGCAAGTACCTTAGCCACGTGTTACCGCTGCCAGGAAAACTGGCC
AGGGCGGTCAACGCTGGCAGCGATTGCAGGGCAGCACTGACGTCACTGGG
CAGGGCCGTGTAGAAGTCGGACTTGTAATCCGCGTAGATTGGAAGATCTC
GATTTATGTACTTGAGGTCGCGACACCAGCGTATCGTCATCTTGCGGCTG
GGCATCGGAAACCGAGGACTATGAAAGCTGGGAAACTCGGCGAAACGTTC
GATGCGCGGTCTTTTGGGATGCGATCCGGGTATGGTGTTCATGG
BS10775.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PC | 954 | CG9164-RC | 77..954 | 894..17 | 4365 | 99.8 | Minus |
CG9164-PA | 954 | CG9164-RA | 77..954 | 894..17 | 4365 | 99.8 | Minus |
CG9164-PB | 954 | CG9164-RB | 77..954 | 894..17 | 4365 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:43:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2838..3717 | 894..15 | 4385 | 99.9 | Minus |
CG9164-RB | 1781 | CG9164-RB | 199..1078 | 894..15 | 4385 | 99.9 | Minus |
CG9164-RC | 2476 | CG9164-RC | 626..1505 | 894..15 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:43:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 340..708 | 1845 | 100 | Plus |
X | 23542271 | X | 15381342..15381666 | 15..339 | 1625 | 100 | Plus |
X | 23542271 | X | 15382229..15382357 | 709..837 | 645 | 100 | Plus |
X | 23542271 | X | 15382546..15382604 | 836..894 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:43:29 has no hits.
BS10775.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:36 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PC | 77..954 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:56 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PB | 77..954 | 17..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:57:49 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 626..1505 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:05:07 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 626..1505 | 15..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:05:07 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15382229..15382355 | 709..835 | 100 | <- | Plus |
X | 15382546..15382604 | 836..894 | 98 | | Plus |
X | 15381343..15381666 | 16..339 | 100 | <- | Plus |
X | 15381802..15382170 | 340..708 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:57:49 Download gff for
BS10775.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15276579..15276637 | 836..894 | 98 | | Plus |
arm_X | 15275376..15275699 | 16..339 | 100 | <- | Plus |
arm_X | 15275835..15276203 | 340..708 | 100 | <- | Plus |
arm_X | 15276262..15276388 | 709..835 | 100 | <- | Plus |
BS10775.5prime Sequence
908 bp (814 high quality bases) assembled on 2006-04-19
> BS10775.5prime
GAAGTTATCAGTCGACATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCT
CGGCAACCATCATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAAC
AACATACCCGGATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGA
GTTTCCCAGCTTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGA
CGATACGCTGGTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATC
TACGCGGATTACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAG
TGCTGCCCTGCAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTG
GCAGCGGTAACACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATC
CTGACGGGCAGCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCC
GGCGGAGAACGTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGT
GGGGCAGCAAAGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGC
GATCCGGAGAAAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCA
CATCGGATTCGCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACT
GGCAGCAATTCGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAACCTC
AGCTGGGCGCGCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGA
CCTGGTCCACCATACGGAGCGGGAGCTGCGCTCCATTCTGGACTTCCTGC
AGTTCCCCATCAACGAGCAACTGATGCGGTGCGCCATTATGCGGAAGGAG
GGCATCTTCCGGCGGAAGAAACGTCTGTTATCTTTCGATCCCTATACGGA
ATCCATGA
BS10775.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PC | 954 | CG9164-RC | 1..892 | 17..908 | 4460 | 100 | Plus |
CG9164-PA | 954 | CG9164-RA | 1..892 | 17..908 | 4460 | 100 | Plus |
CG9164-PB | 954 | CG9164-RB | 1..892 | 17..908 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2758..3653 | 13..908 | 4465 | 99.9 | Plus |
CG9164-RB | 1781 | CG9164-RB | 119..1014 | 13..908 | 4465 | 99.9 | Plus |
CG9164-RC | 2476 | CG9164-RC | 546..1441 | 13..908 | 4465 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 647..279 | 1845 | 100 | Minus |
X | 23542271 | X | 15381406..15381666 | 908..648 | 1305 | 100 | Minus |
X | 23542271 | X | 15382546..15382684 | 151..13 | 680 | 99.3 | Minus |
X | 23542271 | X | 15382229..15382357 | 278..150 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:51:13 has no hits.
BS10775.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:37 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PC | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:13:58 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-PB | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:17:38 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 546..1440 | 13..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:03 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 546..1440 | 13..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:03 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15382546..15382684 | 13..151 | 99 | | Minus |
X | 15381407..15381666 | 648..907 | 100 | <- | Minus |
X | 15381802..15382170 | 279..647 | 100 | <- | Minus |
X | 15382229..15382355 | 152..278 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:17:38 Download gff for
BS10775.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15275440..15275699 | 648..907 | 100 | <- | Minus |
arm_X | 15275835..15276203 | 279..647 | 100 | <- | Minus |
arm_X | 15276262..15276388 | 152..278 | 100 | <- | Minus |
arm_X | 15276579..15276717 | 13..151 | 99 | | Minus |
BS10775.complete Sequence
986 bp assembled on 2006-11-01
GenBank Submission: FJ636732
> BS10775.complete
GAAGTTATCAGTCGACATGGCACTACAAGGCTGGCGCTTTTTCGGTGTCT
CGGCAACCATCATCATCTACATCGGCGGCGTCCTGTTCCTCTCCATGAAC
AACATACCCGGATCGCATCCCAAAAGACCGCGCATCGAACGTTTCGCCGA
GTTTCCCAGCTTTCATAGTCCTCGGTTTCCGATGCCCAGCCGCAAGATGA
CGATACGCTGGTGTCGCGACCTCAAGTACATAAATCGAGATCTTCCAATC
TACGCGGATTACAAGTCCGACTTCTACACGGCCCTGCCCAGTGACGTCAG
TGCTGCCCTGCAATCGCTGCCAGCGTTGACCGCCCTGGCCAGTTTTCCTG
GCAGCGGTAACACGTGGCTAAGGTACTTGCTCCAGCAGGCCACCGGCATC
CTGACGGGCAGCATCTACAAGGACTACGGCCTGCTGAAGACCGGCTTTCC
GGCGGAGAACGTCTGCAACAGTTCAGTATTATTGGTGAAGACCCACGAGT
GGGGCAGCAAAGCGTGGGCGCCCTTCTCGAAAGCAATTCTTCTCGTCCGC
GATCCGGAGAAAGCGATCATCGCGGAGTTCAATCGCCAGAGTGGCGGTCA
CATCGGATTCGCATCACCGGATCGCTACAAGCGCACCAAGGGAAAATACT
GGCAGCAATTCGTGAGCAACAAGCTCAAGGGCTGGGAGATGATGAACCTC
AGCTGGGCGCGCAACTTCACGGGCAGCATCAAGGTGGTGTTCTACGACGA
CCTGGTCCACCATACGGAGCGGGAGCTGCGCTCCATTCTGGACTTCCTGC
AGTTCCCCATCAACGAGCAACTGATGCGGTGCGCCATTATGCGGAAGGAG
GGCATCTTCCGGCGGAAGAAACGTCTGTTATCTTTCGATCCCTATACGGA
ATCCATGAGAGCGGAGGTGCAGAATCGACGGCGCATCGTGTACGGATTGC
TGGGGCGTCAGGAGCCGTAGAAGCTTTCTAGACCAT
BS10775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 954 | CG9164-PD | 1..954 | 17..970 | 4770 | 100 | Plus |
CG9164-RB | 954 | CG9164-PB | 1..954 | 17..970 | 4770 | 100 | Plus |
CG9164-RC | 954 | CG9164-PC | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-RD | 4420 | CG9164-RD | 2758..3717 | 13..972 | 4785 | 99.9 | Plus |
CG9164-RB | 1781 | CG9164-RB | 119..1078 | 13..972 | 4785 | 99.9 | Plus |
CG9164-RC | 2476 | CG9164-RC | 546..1505 | 13..972 | 4785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15381802..15382170 | 647..279 | 1845 | 100 | Minus |
X | 23542271 | X | 15381342..15381666 | 972..648 | 1625 | 100 | Minus |
X | 23542271 | X | 15382546..15382684 | 151..13 | 680 | 99.3 | Minus |
X | 23542271 | X | 15382229..15382357 | 278..150 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:42:15 has no hits.
BS10775.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:09 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:55:34 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 119..1078 | 13..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:49 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 550..1503 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:09 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RB | 119..1078 | 13..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:30 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9164-RC | 550..1503 | 17..970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:30 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15381344..15381666 | 648..970 | 100 | <- | Minus |
X | 15381802..15382170 | 279..647 | 100 | <- | Minus |
X | 15382229..15382355 | 152..278 | 100 | <- | Minus |
X | 15382546..15382680 | 17..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:49 Download gff for
BS10775.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15275377..15275699 | 648..970 | 100 | <- | Minus |
arm_X | 15275835..15276203 | 279..647 | 100 | <- | Minus |
arm_X | 15276262..15276388 | 152..278 | 100 | <- | Minus |
arm_X | 15276579..15276713 | 17..151 | 100 | | Minus |
BS10775.pep Sequence
Translation from 16 to 969
> BS10775.pep
MALQGWRFFGVSATIIIYIGGVLFLSMNNIPGSHPKRPRIERFAEFPSFH
SPRFPMPSRKMTIRWCRDLKYINRDLPIYADYKSDFYTALPSDVSAALQS
LPALTALASFPGSGNTWLRYLLQQATGILTGSIYKDYGLLKTGFPAENVC
NSSVLLVKTHEWGSKAWAPFSKAILLVRDPEKAIIAEFNRQSGGHIGFAS
PDRYKRTKGKYWQQFVSNKLKGWEMMNLSWARNFTGSIKVVFYDDLVHHT
ERELRSILDFLQFPINEQLMRCAIMRKEGIFRRKKRLLSFDPYTESMRAE
VQNRRRIVYGLLGRQEP*
BS10775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9164-PD | 317 | CG9164-PD | 1..317 | 1..317 | 1679 | 100 | Plus |
CG9164-PB | 317 | CG9164-PB | 1..317 | 1..317 | 1679 | 100 | Plus |
CG9164-PC | 317 | CG9164-PC | 1..317 | 1..317 | 1679 | 100 | Plus |