Clone Sequence Records
BS10777.3prime Sequence
825 bp (747 high quality bases) assembled on 2006-04-19
> BS10777.3prime
ATGGTCTAGAAAGCTTTCAAACCTCTTTGGCCAGCTTATGGACCTGGCGA
TAGTTGACGTCCACCAATCGTATACTGCCGCCCACCGTGGCCAGCGGTTT
CATCAAGTTGTTCAGGGTGGTGGCCACCGGATCGAGGATGTCCCTGGCGG
AGCACAGTACATTGTATAGGAAAATCAGTGGTGGCTGCAGGTAGCCGTTG
AAGAGCATGGTCAGGAGGGGCTTGAGCAAGTAGTCGGAGGTCATGTGGAG
CAGTCCAACGATCAGGGTGTTCACCAGGGAGTAGAGGACAAATCGGTAGC
TCTGCAGAATGAAGGCTACCACGAAGGCCACGGCGATGTGCAGCAGTCCG
AAGAGCTCCGCCCAGAAGTGGGTGGCATAGGTGGTGGCGCGGTCGGCCAG
GACAATAGCATTGATCTTCGGATGCGAGTCCGTGGTGCTCAGATAGTCGG
CGCAGCCATGCTCGAAGGGATAGATGCCGATGCAGGTGTGCCGGTTGGCC
TCCTTGCGATTCCACTGTGGCTCCGGCAGATCGTCGATGATGGAATTTCG
GCTCTGCGGCTGGCACTTGCACATCTTGTCCAGCGACTCCACTAAACGGG
CTAGAAAGCCACTCTTCTGCTTCTGCTTCTGCGCCTGCGATGATTTGTGG
GACTTTGTGGCACGACCCTTCACTTTCGGCGCAGTTCTCGTTGGGACGAG
CACACGGGGACGGCGCTTGGAGTAACGCTGGAACTCGATCCTTTGGGGCT
TGCTCTTGCTCANGCTAAGCTGACTCTTCCCCGGCTCAGCGTGCATCTCG
TACAGAGTGTGTGGTGAGCTCCCCG
BS10777.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 1023 | CG3698-RA | 215..1023 | 825..17 | 4026 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 02:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 239..1047 | 825..17 | 4034 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 02:48:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797329..20798137 | 17..825 | 4034 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-09 02:48:06 has no hits.
BS10777.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:41 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 215..1023 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:03 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 215..1023 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 07:50:06 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 239..1052 | 9..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 05:23:19 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 239..1052 | 9..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 05:23:19 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797324..20798137 | 9..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 07:50:06 Download gff for
BS10777.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790424..20791237 | 9..825 | 99 | | Plus |
BS10777.5prime Sequence
884 bp (740 high quality bases) assembled on 2006-04-19
> BS10777.5prime
GAAGTTATCAGTCGACATGTCGGAATCAACCGATCCCCATTGCGCCACCT
CCAAGTCCAACCTGATCAAGGTGAACCACGTGGGGGTGACGGCCAAGCTG
CAGTCTCCCCTGAAGAAGATCTTCCCACGGCTGAACTCCTCCAGCGATTC
CGACGCATATCAGCACAGTCAGACGCAGTACAACATGTTCAAGGATGTGG
CGCACGGGGAAATGACCGCGTCCACGGATTCGGGGAGCTCACCACACACT
CTGTACGAGATGCACGCTGAGCCGGGGAAGAGTCAGCTTAGCCTGAGCAA
GAGCAAGCCCCAAAGGATCGAGTTCCAGCGTTACTCCAAGCGCCGTCCCC
GTGTGCTCGTCCCAACGAGAACTGCGCCGAAAGTGAAGGGTCGTGCCACA
AAGTCCCACAAATCATCGCAGGCGCAGAAGCAGAAGCAGAAGAGTGGCTT
TCTAGCCCGTTTAGTGGAGTCGCTGGACAAGATGTGCAAGTGCCAGCCGC
AGAGCCGAAATTCCATCATCGACGATCTGCCGGAGCCACAGTGGAATCGC
AAGGAGGCCAACCGGCACACCTGCATCGGCATCTATCCCTTCGAGCATGG
CTGCGCCGACTATCTGAGCACCACGGACTCGCATCCGAAGATCAATGCTA
TTGTCCTGGCCGACCGCGCCACCACCTATGCCACCCACTTCTGGGCGGAG
CTCTTCGGACTGCTGCACATCGCCGTGGCCTTCGTGGTAGCCTTCATTCT
GCAGAGCTACCGATTTTGTCTCTACTCCCTGGTGAACACCCTGATCGTTG
GACTGCTCCACATGACCTCCGACTACTTGCTCAAGCCCCTCCTGACCATG
CTCTTCAACGCCTACCTGCAGCCACCACTGATTT
BS10777.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 1023 | CG3698-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
| CG3698-PA | 1023 | CG3698-RA | 754..868 | 770..884 | 550 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 25..892 | 17..884 | 4280 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797484..20798351 | 884..17 | 4280 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:33:32 has no hits.
BS10777.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:42 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:04 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-PA | 1..868 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 05:30:39 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..892 | 6..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:29 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..892 | 6..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:29 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797484..20798361 | 6..884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 05:30:39 Download gff for
BS10777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790584..20791461 | 6..884 | 99 | | Minus |
BS10777.complete Sequence
1055 bp assembled on 2006-11-01
GenBank Submission: FJ636733
> BS10777.complete
GAAGTTATCAGTCGACATGTCGGAATCAACCGATCCCCATTGCGCCACCT
CCAAGTCCAACCTGATCAAGGTGAACCACGTGGGGGTGACGGCCAAGCTG
CAGTCTCCCCTGAAGAAGATCTTCCCACGGCTGAACTCCTCCAGCGATTC
CGACGCATATCAGCACAGTCAGACGCAGTACAACATGTTCAAGGATGTGG
CGCACGGGGAAATGACCGCGTCCACGGATTCGGGGAGCTCACCACACACT
CTGTACGAGATGCACGCTGAGCCGGGGAAGAGTCAGCTTAGCCTGAGCAA
GAGCAAGCCCCAAAGGATCGAGTTCCAGCGTTACTCCAAGCGCCGTCCCC
GTGTGCTCGTCCCAACGAGAACTGCGCCGAAAGTGAAGGGTCGTGCCACA
AAGTCCCACAAATCATCGCAGGCGCAGAAGCAGAAGCAGAAGAGTGGCTT
TCTAGCCCGTTTAGTGGAGTCGCTGGACAAGATGTGCAAGTGCCAGCCGC
AGAGCCGAAATTCCATCATCGACGATCTGCCGGAGCCACAGTGGAATCGC
AAGGAGGCCAACCGGCACACCTGCATCGGCATCTATCCCTTCGAGCATGG
CTGCGCCGACTATCTGAGCACCACGGACTCGCATCCGAAGATCAATGCTA
TTGTCCTGGCCGACCGCGCCACCACCTATGCCACCCACTTCTGGGCGGAG
CTCTTCGGACTGCTGCACATCGCCGTGGCCTTCGTGGTAGCCTTCATTCT
GCAGAGCTACCGATTTGTCCTCTACTCCCTGGTGAACACCCTGATCGTTG
GACTGCTCCACATGACCTCCGACTACTTGCTCAAGCCCCTCCTGACCATG
CTCTTCAACGGCTACCTGCAGCCACCACTGATTTTCCTATACAATGTACT
GTGCTCCGCCAGGGACATCCTCGATCCGGTGGCCACCACCCTGAACAACT
TGATGAAACCGCTGGCCACGGTGGGCGGCAGTATACGATTGGTGGACGTC
AACTATCGCCAGGTCCATAAGCTGGCCAAAGAGGTTTGAAAGCTTTCTAG
ACCAT
BS10777.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1023 | CG3698-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-RA | 1135 | CG3698-RA | 25..1047 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20797329..20798351 | 1039..17 | 5115 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:35:18 has no hits.
BS10777.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:51 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 1..1023 | 17..1039 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:20 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..1052 | 6..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:58 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 25..1046 | 17..1038 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:52 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 15..1052 | 6..1047 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:52 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3698-RA | 25..1046 | 17..1038 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:52 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20797330..20798351 | 17..1038 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:58 Download gff for
BS10777.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20790430..20791451 | 17..1038 | 100 | | Minus |
BS10777.pep Sequence
Translation from 16 to 1038
> BS10777.pep
MSESTDPHCATSKSNLIKVNHVGVTAKLQSPLKKIFPRLNSSSDSDAYQH
SQTQYNMFKDVAHGEMTASTDSGSSPHTLYEMHAEPGKSQLSLSKSKPQR
IEFQRYSKRRPRVLVPTRTAPKVKGRATKSHKSSQAQKQKQKSGFLARLV
ESLDKMCKCQPQSRNSIIDDLPEPQWNRKEANRHTCIGIYPFEHGCADYL
STTDSHPKINAIVLADRATTYATHFWAELFGLLHIAVAFVVAFILQSYRF
VLYSLVNTLIVGLLHMTSDYLLKPLLTMLFNGYLQPPLIFLYNVLCSARD
ILDPVATTLNNLMKPLATVGGSIRLVDVNYRQVHKLAKEV*
BS10777.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3698-PA | 340 | CG3698-PA | 1..340 | 1..340 | 1764 | 100 | Plus |
