Clone BS10780 Report

Search the DGRC for BS10780

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:80
Vector:pDNR-Dual
Associated Gene/Transcriptbabos-RA
Protein status:BS10780.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10780.3prime Sequence

621 bp (620 high quality bases) assembled on 2006-04-19

> BS10780.3prime
ATGGTCTAGAAAGCTTCTAATGTGCGCCCATCCCCAGGAGGAGCAACACG
GTCGATGCCAGGACAGTGCATCCCAGAAAACTGCTCGCAGATCCCGCCGC
GGATGTGGAGCTCTCCGGGGCAATGGCGTCCAGGGAATGCTCGGCGATGG
TCACCTTCGTGTTGACCACGGATCCGGAGGGCAGAACCTTGCAGAGATAG
CTGCCAGCCACCTGGGGACTCGCCTTCAGGATGGTCAGGTCGTAGTTGGC
GTCCAGTTTGAAGTTGGGCTGCACCAGGTTCTTGCCATTGGAAATGACAT
TATCGCCGAAGTACCACAAGACCACCACGTCTGAGCTGTGCAAATTGCTT
CCCACATCGCACTTGAGAACCACATCCTCGCCACGGATTCCCGTCACACT
GAGGGTCTTGTTGATCTTTTCGCTGGCTACAGGATTGGGGGACTTCGTCT
GCGGACTGGGCGCACTCTGGTCTTCGCCTCCGTAGTCGAAGTCATCATCG
GCCTGCATTTGGTCATCGTCCATCGAGGATTGTGGGTAGGAGATCACCGC
GGCACTGCCCACGATCAGTAGGAGTCCGGCGATTAGAAGATCTGTTCTGG
ACATCATGTCGACTGATAACT

BS10780.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3624-PA 591 CG3624-RA 1..591 607..17 2955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..952 607..16 2960 100 Minus
babos-RA 1116 CG3624-RA 361..952 607..16 2960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394227..22394553 16..342 1635 100 Plus
2R 25286936 2R 22394612..22394816 343..547 1025 100 Plus
2R 25286936 2R 22401639..22401699 547..607 305 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:04:09 has no hits.

BS10780.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:47 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:12 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..607 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:33 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..959 10..615 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:52 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..959 10..615 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:52 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22401639..22401706 547..615 94   Plus
2R 22394220..22394553 10..342 99 <- Plus
2R 22394612..22394815 343..546 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:33 Download gff for BS10780.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18289144..18289211 547..615 94   Plus
arm_2R 18281725..18282058 10..342 99 <- Plus
arm_2R 18282117..18282320 343..546 100 <- Plus

BS10780.5prime Sequence

621 bp (620 high quality bases) assembled on 2006-04-19

> BS10780.5prime
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATTAGAAGCTTTCTAGACC

BS10780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3624-PA 591 CG3624-RA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..952 17..608 2960 100 Plus
babos-RA 1116 CG3624-RA 361..952 17..608 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394227..22394553 608..282 1635 100 Minus
2R 25286936 2R 22394612..22394816 281..77 1025 100 Minus
2R 25286936 2R 22401639..22401699 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:12 has no hits.

BS10780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:48 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:13 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3624-PA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:39 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..959 9..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:44 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
babos-RA 354..959 9..614 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:44 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22394220..22394553 282..614 99 <- Minus
2R 22394612..22394815 78..281 100 <- Minus
2R 22401639..22401706 9..77 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:39 Download gff for BS10780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18281725..18282058 282..614 99 <- Minus
arm_2R 18282117..18282320 78..281 100 <- Minus
arm_2R 18289144..18289211 9..77 94   Minus

BS10780.complete Sequence

623 bp assembled on 2006-11-01

GenBank Submission: FJ636734

> BS10780.complete
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATTAGAAGCTTTCTAGACCAT

BS10780.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:32
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 591 CG3624-PB 1..591 17..607 2955 100 Plus
babos-RA 591 CG3624-PA 1..591 17..607 2955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
babos-RB 1303 CG3624-RB 361..952 17..608 2960 100 Plus
babos-RA 1116 CG3624-RA 361..952 17..608 2960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22394227..22394553 608..282 1635 100 Minus
2R 25286936 2R 22394612..22394816 281..77 1025 100 Minus
2R 25286936 2R 22401639..22401699 77..17 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:48:31 has no hits.

BS10780.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:53 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 1..591 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:21 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 351..956 9..614 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:11 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
babos-RA 361..951 17..607 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:53 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
CG3624-RA 351..956 9..614 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:26 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
babos-RA 361..951 17..607 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:26 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22394228..22394553 282..607 100 <- Minus
2R 22394612..22394815 78..281 100 <- Minus
2R 22401639..22401699 17..77 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:11 Download gff for BS10780.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18281733..18282058 282..607 100 <- Minus
arm_2R 18282117..18282320 78..281 100 <- Minus
arm_2R 18289144..18289204 17..77 100   Minus

BS10780.pep Sequence

Translation from 16 to 606

> BS10780.pep
MMSRTDLLIAGLLLIVGSAAVISYPQSSMDDDQMQADDDFDYGGEDQSAP
SPQTKSPNPVASEKINKTLSVTGIRGEDVVLKCDVGSNLHSSDVVVLWYF
GDNVISNGKNLVQPNFKLDANYDLTILKASPQVAGSYLCKVLPSGSVVNT
KVTIAEHSLDAIAPESSTSAAGSASSFLGCTVLASTVLLLLGMGAH*

BS10780.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
babos-PB 196 CG3624-PB 1..196 1..196 986 100 Plus
babos-PA 196 CG3624-PA 1..196 1..196 986 100 Plus