Clone Sequence Records
BS10780.3prime Sequence
621 bp (620 high quality bases) assembled on 2006-04-19
> BS10780.3prime
ATGGTCTAGAAAGCTTCTAATGTGCGCCCATCCCCAGGAGGAGCAACACG
GTCGATGCCAGGACAGTGCATCCCAGAAAACTGCTCGCAGATCCCGCCGC
GGATGTGGAGCTCTCCGGGGCAATGGCGTCCAGGGAATGCTCGGCGATGG
TCACCTTCGTGTTGACCACGGATCCGGAGGGCAGAACCTTGCAGAGATAG
CTGCCAGCCACCTGGGGACTCGCCTTCAGGATGGTCAGGTCGTAGTTGGC
GTCCAGTTTGAAGTTGGGCTGCACCAGGTTCTTGCCATTGGAAATGACAT
TATCGCCGAAGTACCACAAGACCACCACGTCTGAGCTGTGCAAATTGCTT
CCCACATCGCACTTGAGAACCACATCCTCGCCACGGATTCCCGTCACACT
GAGGGTCTTGTTGATCTTTTCGCTGGCTACAGGATTGGGGGACTTCGTCT
GCGGACTGGGCGCACTCTGGTCTTCGCCTCCGTAGTCGAAGTCATCATCG
GCCTGCATTTGGTCATCGTCCATCGAGGATTGTGGGTAGGAGATCACCGC
GGCACTGCCCACGATCAGTAGGAGTCCGGCGATTAGAAGATCTGTTCTGG
ACATCATGTCGACTGATAACT
BS10780.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:55:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3624-PA | 591 | CG3624-RA | 1..591 | 607..17 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..952 | 607..16 | 2960 | 100 | Minus |
babos-RA | 1116 | CG3624-RA | 361..952 | 607..16 | 2960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394227..22394553 | 16..342 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 22394612..22394816 | 343..547 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 22401639..22401699 | 547..607 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:04:09 has no hits.
BS10780.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:47 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:12 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..607 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:33 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..959 | 10..615 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:06:52 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..959 | 10..615 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:06:52 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22401639..22401706 | 547..615 | 94 | | Plus |
2R | 22394220..22394553 | 10..342 | 99 | <- | Plus |
2R | 22394612..22394815 | 343..546 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:33 Download gff for
BS10780.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18289144..18289211 | 547..615 | 94 | | Plus |
arm_2R | 18281725..18282058 | 10..342 | 99 | <- | Plus |
arm_2R | 18282117..18282320 | 343..546 | 100 | <- | Plus |
BS10780.5prime Sequence
621 bp (620 high quality bases) assembled on 2006-04-19
> BS10780.5prime
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATTAGAAGCTTTCTAGACC
BS10780.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3624-PA | 591 | CG3624-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..952 | 17..608 | 2960 | 100 | Plus |
babos-RA | 1116 | CG3624-RA | 361..952 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394227..22394553 | 608..282 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 22394612..22394816 | 281..77 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 22401639..22401699 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:47:12 has no hits.
BS10780.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:48 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:13 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-PA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:56:39 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..959 | 9..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:44 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 354..959 | 9..614 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:44 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22394220..22394553 | 282..614 | 99 | <- | Minus |
2R | 22394612..22394815 | 78..281 | 100 | <- | Minus |
2R | 22401639..22401706 | 9..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:56:39 Download gff for
BS10780.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18281725..18282058 | 282..614 | 99 | <- | Minus |
arm_2R | 18282117..18282320 | 78..281 | 100 | <- | Minus |
arm_2R | 18289144..18289211 | 9..77 | 94 | | Minus |
BS10780.complete Sequence
623 bp assembled on 2006-11-01
GenBank Submission: FJ636734
> BS10780.complete
GAAGTTATCAGTCGACATGATGTCCAGAACAGATCTTCTAATCGCCGGAC
TCCTACTGATCGTGGGCAGTGCCGCGGTGATCTCCTACCCACAATCCTCG
ATGGACGATGACCAAATGCAGGCCGATGATGACTTCGACTACGGAGGCGA
AGACCAGAGTGCGCCCAGTCCGCAGACGAAGTCCCCCAATCCTGTAGCCA
GCGAAAAGATCAACAAGACCCTCAGTGTGACGGGAATCCGTGGCGAGGAT
GTGGTTCTCAAGTGCGATGTGGGAAGCAATTTGCACAGCTCAGACGTGGT
GGTCTTGTGGTACTTCGGCGATAATGTCATTTCCAATGGCAAGAACCTGG
TGCAGCCCAACTTCAAACTGGACGCCAACTACGACCTGACCATCCTGAAG
GCGAGTCCCCAGGTGGCTGGCAGCTATCTCTGCAAGGTTCTGCCCTCCGG
ATCCGTGGTCAACACGAAGGTGACCATCGCCGAGCATTCCCTGGACGCCA
TTGCCCCGGAGAGCTCCACATCCGCGGCGGGATCTGCGAGCAGTTTTCTG
GGATGCACTGTCCTGGCATCGACCGTGTTGCTCCTCCTGGGGATGGGCGC
ACATTAGAAGCTTTCTAGACCAT
BS10780.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:48:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 591 | CG3624-PB | 1..591 | 17..607 | 2955 | 100 | Plus |
babos-RA | 591 | CG3624-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-RB | 1303 | CG3624-RB | 361..952 | 17..608 | 2960 | 100 | Plus |
babos-RA | 1116 | CG3624-RA | 361..952 | 17..608 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22394227..22394553 | 608..282 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 22394612..22394816 | 281..77 | 1025 | 100 | Minus |
2R | 25286936 | 2R | 22401639..22401699 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:48:31 has no hits.
BS10780.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:52:53 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 1..591 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:28:21 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 351..956 | 9..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:11 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 361..951 | 17..607 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:52:53 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3624-RA | 351..956 | 9..614 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:27:26 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
babos-RA | 361..951 | 17..607 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:27:26 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22394228..22394553 | 282..607 | 100 | <- | Minus |
2R | 22394612..22394815 | 78..281 | 100 | <- | Minus |
2R | 22401639..22401699 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:11 Download gff for
BS10780.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18281733..18282058 | 282..607 | 100 | <- | Minus |
arm_2R | 18282117..18282320 | 78..281 | 100 | <- | Minus |
arm_2R | 18289144..18289204 | 17..77 | 100 | | Minus |
BS10780.pep Sequence
Translation from 16 to 606
> BS10780.pep
MMSRTDLLIAGLLLIVGSAAVISYPQSSMDDDQMQADDDFDYGGEDQSAP
SPQTKSPNPVASEKINKTLSVTGIRGEDVVLKCDVGSNLHSSDVVVLWYF
GDNVISNGKNLVQPNFKLDANYDLTILKASPQVAGSYLCKVLPSGSVVNT
KVTIAEHSLDAIAPESSTSAAGSASSFLGCTVLASTVLLLLGMGAH*
BS10780.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:50:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
babos-PB | 196 | CG3624-PB | 1..196 | 1..196 | 986 | 100 | Plus |
babos-PA | 196 | CG3624-PA | 1..196 | 1..196 | 986 | 100 | Plus |