Clone Sequence Records
BS10783.3prime Sequence
879 bp (801 high quality bases) assembled on 2006-04-19
> BS10783.3prime
ATGGTCTAGAAAGCTTTCACTTGGACGTTTGGTGGCTCGCGTAGTGCGGC
CAGTGCCTCAGTTCCCGCTGCAGTGCGTCCGTATAGCTGCCCAACACGAA
GAGTTGGTAAATTGGCTGCAGAATCCGACGCTTTAAAGACTCAAGGATCA
GAGCCTGGGCGGCCATCAACTGGCAATCGATGGGTGGTCTGCCGCTGAAG
TTACCCACAAAGGCCATCACCAACGAGTCTATTCCATTTAGATCCCTTGG
ATACTGGCTCCGATAGTGCCATCCTTGTGCCTCGAAAACCTGACAATCAC
CGGCGACCAGAAAGTTGTAGGGCAGCTCCCCCACATGCGACCTTTCCAGC
TTATGCAATACATCCGGGCAATCATCGTGGCATTCATTGCTTCCAGTGTG
GGTAAAAATCACTGTGCCGACACCGATCGGATCGAAAAGAGTTCCCCGAC
CCTGAAGTTCCATATCCGACCATATGCCATGACCCACGATACTGAGTCGA
TAGCCAAAGTCCGGCGTTTGGGTTTGTCTCCAGAGCAAATAGGCGGCCAG
TGCCAAGGCGGATGCACACATGACCAGCAGTCCCACCGAGCGCCAATTGA
AGCAGTCTTCGTGGAGCGTCGGGTTCCTTCGGCAATTCGAAGGCGTCGTG
GAGGAGGCTGAGACTGAGGCTGTGAGGGATGAGGACGTCTTGATGGACCG
CTGAGCAGCTGCCAGCAAGGGAGTGGATTCGCTTGCAACGCCTTCCTTGT
CCACTCGAATGTGTATATCTTGGCTGGAACCCAGGCTGCCGTACGACGAC
TGAGAGACGGCGGCCGGCGAGGGACTACGACGTGCCACTCGCACGGCTAT
GTGGCTGGAGTCCATGTCGACTGATAACT
BS10783.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33717-PB | 849 | PGRP-LD-RB | 1..849 | 865..17 | 4245 | 100 | Minus |
CG33717-PA | 849 | PGRP-LD-RA | 1..849 | 865..17 | 4245 | 100 | Minus |
CG33717-PC | 849 | PGRP-LD-RC | 1..849 | 865..17 | 4245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:43:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 3010 | CG33717-RC | 719..1569 | 866..16 | 4255 | 100 | Minus |
PGRP-LD-RA | 3600 | CG33717-RA | 1309..2159 | 866..16 | 4255 | 100 | Minus |
PGRP-LD-RB | 3563 | CG33717-RB | 1272..2122 | 866..16 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:43:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5782917..5783244 | 343..16 | 1640 | 100 | Minus |
3L | 28110227 | 3L | 5781996..5782308 | 835..523 | 1565 | 100 | Minus |
3L | 28110227 | 3L | 5782671..5782849 | 522..344 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 16:43:35 has no hits.
BS10783.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:55 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PA | 1..849 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:21 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PC | 1..849 | 17..865 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:37 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2124 | 13..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:49 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2124 | 13..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:49 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5781691..5781722 | 835..866 | 100 | -> | Minus |
3L | 5781997..5782308 | 523..834 | 100 | -> | Minus |
3L | 5782671..5782849 | 344..522 | 100 | -> | Minus |
3L | 5782917..5783246 | 13..343 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:37 Download gff for
BS10783.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5774791..5774822 | 835..866 | 100 | -> | Minus |
arm_3L | 5775097..5775408 | 523..834 | 100 | -> | Minus |
arm_3L | 5775771..5775949 | 344..522 | 100 | -> | Minus |
arm_3L | 5776017..5776346 | 13..343 | 99 | | Minus |
BS10783.5prime Sequence
857 bp (772 high quality bases) assembled on 2006-04-19
> BS10783.5prime
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGT
BS10783.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33717-PB | 849 | PGRP-LD-RB | 1..841 | 17..857 | 4205 | 100 | Plus |
CG33717-PA | 849 | PGRP-LD-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
CG33717-PC | 849 | PGRP-LD-RC | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 3010 | CG33717-RC | 719..1560 | 16..857 | 4210 | 100 | Plus |
PGRP-LD-RA | 3600 | CG33717-RA | 1309..2150 | 16..857 | 4210 | 100 | Plus |
PGRP-LD-RB | 3563 | CG33717-RB | 1272..2113 | 16..857 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5782917..5783235 | 539..857 | 1595 | 100 | Plus |
3L | 28110227 | 3L | 5781996..5782308 | 47..359 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 5782671..5782849 | 360..538 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:49:44 has no hits.
BS10783.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:56 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:22 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33717-PC | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:43:24 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2113 | 16..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:49 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1272..2113 | 16..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:49 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5781691..5781722 | 16..47 | 100 | -> | Plus |
3L | 5781997..5782308 | 48..359 | 100 | -> | Plus |
3L | 5782671..5782849 | 360..538 | 100 | -> | Plus |
3L | 5782917..5783235 | 539..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:43:24 Download gff for
BS10783.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5774791..5774822 | 16..47 | 100 | -> | Plus |
arm_3L | 5775097..5775408 | 48..359 | 100 | -> | Plus |
arm_3L | 5775771..5775949 | 360..538 | 100 | -> | Plus |
arm_3L | 5776017..5776335 | 539..857 | 100 | | Plus |
BS10783.complete Sequence
881 bp assembled on 2006-11-01
GenBank Submission: FJ636735
> BS10783.complete
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGTCCAAGTGAAAGCTTTCTAGACCAT
BS10783.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 849 | CG33717-PC | 1..849 | 17..865 | 4245 | 100 | Plus |
PGRP-LD-RA | 849 | CG33717-PA | 1..849 | 17..865 | 4245 | 100 | Plus |
PGRP-LD-RB | 849 | CG33717-PB | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-RC | 3010 | CG33717-RC | 719..1569 | 16..866 | 4255 | 100 | Plus |
PGRP-LD-RA | 3600 | CG33717-RA | 1309..2159 | 16..866 | 4255 | 100 | Plus |
PGRP-LD-RB | 3563 | CG33717-RB | 1272..2122 | 16..866 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5782917..5783244 | 539..866 | 1640 | 100 | Plus |
3L | 28110227 | 3L | 5781996..5782308 | 47..359 | 1565 | 100 | Plus |
3L | 28110227 | 3L | 5782671..5782849 | 360..538 | 895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:55 has no hits.
BS10783.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:27 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:40 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 725..1577 | 16..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:45 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1273..2120 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:27 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RC | 725..1577 | 16..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:37 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PGRP-LD-RB | 1273..2120 | 17..864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:37 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5782671..5782849 | 360..538 | 100 | -> | Plus |
3L | 5782917..5783242 | 539..864 | 100 | | Plus |
3L | 5781997..5782308 | 48..359 | 100 | -> | Plus |
3L | 5781692..5781722 | 17..47 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:45 Download gff for
BS10783.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5774792..5774822 | 17..47 | 100 | -> | Plus |
arm_3L | 5775097..5775408 | 48..359 | 100 | -> | Plus |
arm_3L | 5775771..5775949 | 360..538 | 100 | -> | Plus |
arm_3L | 5776017..5776342 | 539..864 | 100 | | Plus |
BS10783.pep Sequence
Translation from 16 to 864
> BS10783.pep
MDSSHIAVRVARRSPSPAAVSQSSYGSLGSSQDIHIRVDKEGVASESTPL
LAAAQRSIKTSSSLTASVSASSTTPSNCRRNPTLHEDCFNWRSVGLLVMC
ASALALAAYLLWRQTQTPDFGYRLSIVGHGIWSDMELQGRGTLFDPIGVG
TVIFTHTGSNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEAQGWH
YRSQYPRDLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQ
PIYQLFVLGSYTDALQRELRHWPHYASHQTSK*
BS10783.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PGRP-LD-PC | 282 | CG33717-PC | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PA | 282 | CG33717-PA | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PB | 282 | CG33717-PB | 1..282 | 1..282 | 1483 | 100 | Plus |
PGRP-LD-PD | 327 | CG33717-PD | 55..327 | 10..282 | 1438 | 99.6 | Plus |
PGRP-SA-PB | 203 | CG11709-PB | 64..202 | 152..278 | 159 | 31.2 | Plus |