Clone BS10783 Report

Search the DGRC for BS10783

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:107
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptPGRP-LD-RA
Protein status:BS10783.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS10783.3prime Sequence

879 bp (801 high quality bases) assembled on 2006-04-19

> BS10783.3prime
ATGGTCTAGAAAGCTTTCACTTGGACGTTTGGTGGCTCGCGTAGTGCGGC
CAGTGCCTCAGTTCCCGCTGCAGTGCGTCCGTATAGCTGCCCAACACGAA
GAGTTGGTAAATTGGCTGCAGAATCCGACGCTTTAAAGACTCAAGGATCA
GAGCCTGGGCGGCCATCAACTGGCAATCGATGGGTGGTCTGCCGCTGAAG
TTACCCACAAAGGCCATCACCAACGAGTCTATTCCATTTAGATCCCTTGG
ATACTGGCTCCGATAGTGCCATCCTTGTGCCTCGAAAACCTGACAATCAC
CGGCGACCAGAAAGTTGTAGGGCAGCTCCCCCACATGCGACCTTTCCAGC
TTATGCAATACATCCGGGCAATCATCGTGGCATTCATTGCTTCCAGTGTG
GGTAAAAATCACTGTGCCGACACCGATCGGATCGAAAAGAGTTCCCCGAC
CCTGAAGTTCCATATCCGACCATATGCCATGACCCACGATACTGAGTCGA
TAGCCAAAGTCCGGCGTTTGGGTTTGTCTCCAGAGCAAATAGGCGGCCAG
TGCCAAGGCGGATGCACACATGACCAGCAGTCCCACCGAGCGCCAATTGA
AGCAGTCTTCGTGGAGCGTCGGGTTCCTTCGGCAATTCGAAGGCGTCGTG
GAGGAGGCTGAGACTGAGGCTGTGAGGGATGAGGACGTCTTGATGGACCG
CTGAGCAGCTGCCAGCAAGGGAGTGGATTCGCTTGCAACGCCTTCCTTGT
CCACTCGAATGTGTATATCTTGGCTGGAACCCAGGCTGCCGTACGACGAC
TGAGAGACGGCGGCCGGCGAGGGACTACGACGTGCCACTCGCACGGCTAT
GTGGCTGGAGTCCATGTCGACTGATAACT

BS10783.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG33717-PB 849 PGRP-LD-RB 1..849 865..17 4245 100 Minus
CG33717-PA 849 PGRP-LD-RA 1..849 865..17 4245 100 Minus
CG33717-PC 849 PGRP-LD-RC 1..849 865..17 4245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 16:43:39
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 3010 CG33717-RC 719..1569 866..16 4255 100 Minus
PGRP-LD-RA 3600 CG33717-RA 1309..2159 866..16 4255 100 Minus
PGRP-LD-RB 3563 CG33717-RB 1272..2122 866..16 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 16:43:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5782917..5783244 343..16 1640 100 Minus
3L 28110227 3L 5781996..5782308 835..523 1565 100 Minus
3L 28110227 3L 5782671..5782849 522..344 895 100 Minus
Blast to na_te.dros performed on 2015-02-03 16:43:35 has no hits.

BS10783.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:55 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PA 1..849 17..865 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:21 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PC 1..849 17..865 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:29:37 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2124 13..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:56:49 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2124 13..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:56:49 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5781691..5781722 835..866 100 -> Minus
3L 5781997..5782308 523..834 100 -> Minus
3L 5782671..5782849 344..522 100 -> Minus
3L 5782917..5783246 13..343 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:29:37 Download gff for BS10783.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5774791..5774822 835..866 100 -> Minus
arm_3L 5775097..5775408 523..834 100 -> Minus
arm_3L 5775771..5775949 344..522 100 -> Minus
arm_3L 5776017..5776346 13..343 99   Minus

BS10783.5prime Sequence

857 bp (772 high quality bases) assembled on 2006-04-19

> BS10783.5prime
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGT

BS10783.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG33717-PB 849 PGRP-LD-RB 1..841 17..857 4205 100 Plus
CG33717-PA 849 PGRP-LD-RA 1..841 17..857 4205 100 Plus
CG33717-PC 849 PGRP-LD-RC 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 3010 CG33717-RC 719..1560 16..857 4210 100 Plus
PGRP-LD-RA 3600 CG33717-RA 1309..2150 16..857 4210 100 Plus
PGRP-LD-RB 3563 CG33717-RB 1272..2113 16..857 4210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5782917..5783235 539..857 1595 100 Plus
3L 28110227 3L 5781996..5782308 47..359 1565 100 Plus
3L 28110227 3L 5782671..5782849 360..538 895 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:49:44 has no hits.

BS10783.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:49:56 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:14:22 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33717-PC 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:43:24 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2113 16..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:18:49 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1272..2113 16..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:18:49 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5781691..5781722 16..47 100 -> Plus
3L 5781997..5782308 48..359 100 -> Plus
3L 5782671..5782849 360..538 100 -> Plus
3L 5782917..5783235 539..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:43:24 Download gff for BS10783.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5774791..5774822 16..47 100 -> Plus
arm_3L 5775097..5775408 48..359 100 -> Plus
arm_3L 5775771..5775949 360..538 100 -> Plus
arm_3L 5776017..5776335 539..857 100   Plus

BS10783.complete Sequence

881 bp assembled on 2006-11-01

GenBank Submission: FJ636735

> BS10783.complete
GAAGTTATCAGTCGACATGGACTCCAGCCACATAGCCGTGCGAGTGGCAC
GTCGTAGTCCCTCGCCGGCCGCCGTCTCTCAGTCGTCGTACGGCAGCCTG
GGTTCCAGCCAAGATATACACATTCGAGTGGACAAGGAAGGCGTTGCAAG
CGAATCCACTCCCTTGCTGGCAGCTGCTCAGCGGTCCATCAAGACGTCCT
CATCCCTCACAGCCTCAGTCTCAGCCTCCTCCACGACGCCTTCGAATTGC
CGAAGGAACCCGACGCTCCACGAAGACTGCTTCAATTGGCGCTCGGTGGG
ACTGCTGGTCATGTGTGCATCCGCCTTGGCACTGGCCGCCTATTTGCTCT
GGAGACAAACCCAAACGCCGGACTTTGGCTATCGACTCAGTATCGTGGGT
CATGGCATATGGTCGGATATGGAACTTCAGGGTCGGGGAACTCTTTTCGA
TCCGATCGGTGTCGGCACAGTGATTTTTACCCACACTGGAAGCAATGAAT
GCCACGATGATTGCCCGGATGTATTGCATAAGCTGGAAAGGTCGCATGTG
GGGGAGCTGCCCTACAACTTTCTGGTCGCCGGTGATTGTCAGGTTTTCGA
GGCACAAGGATGGCACTATCGGAGCCAGTATCCAAGGGATCTAAATGGAA
TAGACTCGTTGGTGATGGCCTTTGTGGGTAACTTCAGCGGCAGACCACCC
ATCGATTGCCAGTTGATGGCCGCCCAGGCTCTGATCCTTGAGTCTTTAAA
GCGTCGGATTCTGCAGCCAATTTACCAACTCTTCGTGTTGGGCAGCTATA
CGGACGCACTGCAGCGGGAACTGAGGCACTGGCCGCACTACGCGAGCCAC
CAAACGTCCAAGTGAAAGCTTTCTAGACCAT

BS10783.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 849 CG33717-PC 1..849 17..865 4245 100 Plus
PGRP-LD-RA 849 CG33717-PA 1..849 17..865 4245 100 Plus
PGRP-LD-RB 849 CG33717-PB 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:56
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-RC 3010 CG33717-RC 719..1569 16..866 4255 100 Plus
PGRP-LD-RA 3600 CG33717-RA 1309..2159 16..866 4255 100 Plus
PGRP-LD-RB 3563 CG33717-RB 1272..2122 16..866 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5782917..5783244 539..866 1640 100 Plus
3L 28110227 3L 5781996..5782308 47..359 1565 100 Plus
3L 28110227 3L 5782671..5782849 360..538 895 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:16:55 has no hits.

BS10783.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:27 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:40 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 725..1577 16..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:45 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1273..2120 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:27 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RC 725..1577 16..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:37 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
PGRP-LD-RB 1273..2120 17..864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:37 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5782671..5782849 360..538 100 -> Plus
3L 5782917..5783242 539..864 100   Plus
3L 5781997..5782308 48..359 100 -> Plus
3L 5781692..5781722 17..47 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:45 Download gff for BS10783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5774792..5774822 17..47 100 -> Plus
arm_3L 5775097..5775408 48..359 100 -> Plus
arm_3L 5775771..5775949 360..538 100 -> Plus
arm_3L 5776017..5776342 539..864 100   Plus

BS10783.pep Sequence

Translation from 16 to 864

> BS10783.pep
MDSSHIAVRVARRSPSPAAVSQSSYGSLGSSQDIHIRVDKEGVASESTPL
LAAAQRSIKTSSSLTASVSASSTTPSNCRRNPTLHEDCFNWRSVGLLVMC
ASALALAAYLLWRQTQTPDFGYRLSIVGHGIWSDMELQGRGTLFDPIGVG
TVIFTHTGSNECHDDCPDVLHKLERSHVGELPYNFLVAGDCQVFEAQGWH
YRSQYPRDLNGIDSLVMAFVGNFSGRPPIDCQLMAAQALILESLKRRILQ
PIYQLFVLGSYTDALQRELRHWPHYASHQTSK*

BS10783.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
PGRP-LD-PC 282 CG33717-PC 1..282 1..282 1483 100 Plus
PGRP-LD-PA 282 CG33717-PA 1..282 1..282 1483 100 Plus
PGRP-LD-PB 282 CG33717-PB 1..282 1..282 1483 100 Plus
PGRP-LD-PD 327 CG33717-PD 55..327 10..282 1438 99.6 Plus
PGRP-SA-PB 203 CG11709-PB 64..202 152..278 159 31.2 Plus