Clone BS10811 Report

Search the DGRC for BS10811

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG2469-RA
Protein status:BS10811.pep: full length peptide match
Sequenced Size:3485

Clone Sequence Records

BS10811.complete Sequence

3485 bp assembled on 2009-12-07

GenBank Submission: KX803159

> BS10811.complete
GAAGTTATCAGTCGACATGTCCAACTGCATAGAGATCCCTTTGCAGGACA
CCGATGAGGTGATCGAGGTGGACCCGGATCAACTGCCCGACTGTCCAGAG
GTGTTGAGCATTCTCAAGCAGGAGCGGGCGCCCCTGCACGTTTGGGTCAA
TGTGGCGCTTGCCTACTACAAACAAAAGAAGACGGAGGACTTTGTCACGC
TGCTGGAGGAGTCGCGCAGCGATGACGCCACCAAGGAGTACCGCGACTCG
GACAAGGACCTCATGCGTGCCCTGGACATGCTCGCTGCCCACTATGTCCA
GGAGGCGTATCGGGAGAAGTCCAAGGACAAGAAACGAGAGCTCTTCATGA
AGGCCACCAACTTGTACACCAGTGCCGACAAGATTATCATGTACGACCAG
AGCCATCTGTTGGGCAGGGCCTACTTCTGTCTGCTGGAGGGCGACAAGAT
GGACCAGGCGGATGCCCAGTTCAACTTTGTGCTTAACCAGTCCCCCTCGA
ATATTCCCTCCCTACTGGGAAAGGCCTGCATCGCGTTCAATCGCAAAGAT
TACCGTGGAGCGATGGCCTTCTACAAGAAGGCCTTGCGTACAAATCCAAA
CTGTCCTGCGAATGTGAGAATCGGCATGGCCCATTGCTTCCTGAAGATGG
GCAATCCCGAGAAGGCCAAGCTAGCCTTTGAACGAGCGCTCCAGCTGGAT
CAGCAGTGTGTGGGCGCTTTGATTGGCCTGGCCGTTCTCAAGCTGAATCA
ACTTGAGCCCGAATCCAACAAACTGGGTGTCCAGATGCTCTCCAAGGCGT
ACACCATCGACAATGCCAATCCCATGGTGCTCAATCACCTGGCCAATCAC
TTCTTCTTTAAGAAGGACTATCAGAAAGTCCACCACCTGGCGCTGCACGC
CTTCCACAACACCGAGAACGAGGCGATGCGAGCCGAGAGCTGTTACCAGC
TGGCCAGGAGTTTCCATGCCCAGAGCGACTACGATCAGGCCTTTCAGTAC
TATTACCAATCCACTCAGATTGCGCCAGCTAACTTCGTGCTGCCCCATTA
CGGACTAGGCCAGATGTATATTTATCGAGGAGATACAGAAAATGCCGCTC
AGTGTTTCGAGAAAGTGCTGAAAATCCAGCCAGGCAACTACGAGACCATG
AAGATTCTGGGATCCCTGTACGCACACTCCAATTCGCAAACCAAACGTGA
CATGGCCAAGACTCACCTCAAGAAGGTCACCGAACAATTTCCTGAAGACA
TTGAAGCCTGGATAGAACTGGCTCAAATCCTGGAGCAGAACGACCTGCAG
GCCTCGCTCAGTGCTTACGGCACAGCCTCTAGTATTCTTCGGGACAAGGC
CAAGTACGAGATACCCGCTGAGATTCAAAACAACGTGGCTTCACTGCACT
ACCGCCTGGGCAACTTGAAGATGGCAAAGCTCACTTTGGAGTCGGCCCTG
AAGCATGCAACCTCTGAGATGGACAAGGATGTAAAATACTACGAGTCCAT
TCAGGTCACCATGAAGTACAATCTGGCCCGTCTGAACGAGGCAATGAGTA
GCTACGATGTGGCCGACAAGCTGTACAAGGAGATCCTCAAGGAGCATCCC
AACTATATTGACTGCTACTTACGGCTGGGTTGCATGGCAAGGGACAAGGG
TCTCATTTTCGTGGCTTCCGATTTCTTCAAGGACGCGCTGAACATCAACA
ACGACAATCCAGATGCGAGATCACTGCTGGGAAATCTCCATTTGGCCAAG
ATGCAATTCGCTTTGGGACAGAAGAATTTCGAAACGATCCTCAAGAATCC
GTCTACTTCCACCGACGCCTACTCACTGATTGCTCTGGGAAACTTTTCGT
TGCAAACACTGCATCAGCCGAGTAGAGATAAGGAGAAGGAGAGGAAGCAC
CAGGAGAAGGCTTTGGCCATATTCAAACAAGTTCTTCGCAATGATCCCCG
AAATATTTGGGCCACCAATGGAATCGGTGCCGTGCTGGCACATAAGGGAT
GCGTGATCGAGGCGCGCGATATCTTCGCCCAGGTGCGCGAAGCCACCGCC
GACTTTTGCGACGTGTGGCTGAACATTGCGCACGTTTATGTCGAACAGAA
GCAGTACATCAGCGCTATTCAGATGTATGAGAACTGCATGAAGAAGTTCT
ACAAGCACAACAACGTCGAGGTAATGCAATATCTGGCAAGAGCGTATCTA
CGAGCCAACAAGCTGGTCGATGCCAAGGCAGTGCTACTTAAGGCCCGTCG
AGTTGCTCCCCAGGACACAGTTCTACTCTTCAACATAGCAGTGGTCCTCT
CACGTTTGGCCATGGCCATACTCAAGGATGAGAAATCTACTCTGGAAATT
GTGCTGCAAGCTGTCCATGAACTGGAGCTGGCTCAAAAATACTTCCAATA
TCTGTCCGTGCACGGGGATAAGAATCGCTTCAACATTGAGGTGGCTGGCA
TTGAGGCAAGCACCTGCCAAGATCTTCTCTCTCAGGCCCAGTACCATGTG
GGCCGTGCACGTCGCATTGACGAGGAGGAGCGCTCGTTGCGCCGGAAGCA
GGAAGAGGAGCGCGAGGCCTTCAAAATTAAGGTGGCGGAGCAGCGCAAGC
GGCGCGAGGAGGAGGCAAAGACCTCCAGGGACCAGTTGTTAGCCAAGCGG
CAGGAGTACGTGGAGAAGACCAAGAACATGCTCATCATTGCGGACGCTCC
ACCTGAAAAGGAACGCAAGAAGGGTGGTGGGCGAGGTCGTAAAGATGACT
ACATCTCCGGTACCGAAAGCGATAACGATGGAGCTCGTCGTGAGGGAGAA
CGTCCCTCGAAGAAGAAGGGCAAGGGGGAACGCAAAAAGGGTGGCGGTCG
CAAGCGCAAAACGGAGAAGTACGAGAGCGACAGCGAGGAAGAGCCAGGTG
CCAGTGGCAAGTCGGGAAAGAAGAAGGGCAAGAAGCCGAAGCCGGTTAAA
GAGTCCAAGGAGAAGCTTTCTGCCAAGCAGCGCCTCAAGGTGCTTTCCAA
GGAGACGATCTCCACCAGCGAATCCGAGTCTGACGGCAAGCGCAGCAAGA
GCAGAAGTAGAAGCAGGAGTCGAAATCGCAGTGGTAGCCGAAGTGGCAGT
GCCTCTAGAAGCGGCAGTGATCGCGAGGCTAGCCGCAAGCGCAGCAGGAG
CAGAAGTGGATCTGGATCTGGGAGTGACAGTGATGAAGCAACTAAGCGGA
AGCGCGCCAGGAATCGCATCGAATCTGGCGGGGAATCGGATAGATCTGGG
TCCCGTGCTCGCTCCAAGTCGAGTTCCCGTTCAAGATCTCGATCCAAGTC
CGGATCTCGATCGAGGTCTCGCTCCAAGTCGGGATCCCGTTCGAGATCGC
GCTCAAAGTCCGGTTCCCGCTCGAGATCCCGCTCGCCGTCGGGTTCAAGA
TCCCGCTCTCGCTCTGGCAGCCGATCCAAGTCCGAATCCCGTAGCAGATC
AGGGTCCCCGGAAAAATAAAAGCTTTCTAGACCAT

BS10811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-RA 3453 CG2469-PA 1..3453 17..3469 17265 100 Plus
CG2469-RB 3453 CG2469-PB 1..3453 17..3469 17265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-RA 3702 CG2469-RA 152..3605 16..3469 17270 100 Plus
CG2469-RB 3770 CG2469-RB 220..3673 16..3469 17270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1310628..1311708 2389..3469 5405 100 Plus
3L 28110227 3L 1307963..1308900 157..1094 4690 100 Plus
3L 28110227 3L 1308957..1309795 1094..1932 4195 100 Plus
3L 28110227 3L 1309857..1310314 1931..2388 2290 100 Plus
3L 28110227 3L 1307802..1307902 57..157 505 100 Plus
3L 28110227 3L 1307699..1307745 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:47:42 has no hits.

BS10811.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:06 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2469-RA 148..3592 17..3461 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:22:02 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 221..3665 17..3461 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:01:03 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2469-RA 148..3592 17..3461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:18:29 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 221..3665 17..3461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:18:29 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1309857..1310314 1931..2388 100 -> Plus
3L 1307700..1307741 17..58 100 -> Plus
3L 1307804..1307902 59..157 100 -> Plus
3L 1307964..1308899 158..1093 100 -> Plus
3L 1308957..1309793 1094..1930 100 -> Plus
3L 1310628..1311700 2389..3461 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:22:02 Download gff for BS10811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1307700..1307741 17..58 100 -> Plus
arm_3L 1307804..1307902 59..157 100 -> Plus
arm_3L 1307964..1308899 158..1093 100 -> Plus
arm_3L 1308957..1309793 1094..1930 100 -> Plus
arm_3L 1309857..1310314 1931..2388 100 -> Plus
arm_3L 1310628..1311700 2389..3461 100   Plus

BS10811.3prime Sequence

484 bp (301 high quality bases) assembled on 2006-04-19

> BS10811.3prime
ATGGTCTAGAAAGCTTTTATTTTCCCGGGGACCCTGATCTGCTACGGGAT
TCGGACTTGGATCGGCTGCCAGAGCGAGAGCGGGATCTTGAACCCGACGG
CGAGCGGGATCTCGAGCGGGAACCGGACTTTGAGCGCGATCTCGAACGGG
ATCCCGACTTGGAGCGAGACCGCGATCGAGATCCGGACTTGGATCGAGAT
CTTGAACGGGAACTCGACTTGGAGCGAGGACGGGACCCAGATCTATCCGA
TTCCCCGCCAGATTCGATGCGATTCCTGGCGCGCTTCCGCTTAGTTGCTT
CATCACTGTCACTCCCAGATCCAGATCCACTTCTGCTCCTGCTGCGCTTG
CGGCTAGCCTCGCGATCACTGCCGCTTCTAGAGGCACTGCCACTTCGGCT
ACCACTGCGATTGCGACTCCTGCTTCTACTTCTGCTCTTGCTGCGCTTGC
CGTCAGACTCGGATTCGGTGGCGGAGATCGTCTC

BS10811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-PB 3453 CG2469-RB 2986..3453 484..17 2190 98.7 Minus
CG2469-PA 3453 CG2469-RA 2986..3453 484..17 2190 98.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-RA 3702 CG2469-RA 3138..3605 484..17 2250 98.7 Minus
CG2469-RB 3770 CG2469-RB 3206..3673 484..17 2250 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1311241..1311708 484..17 2250 98.7 Minus
Blast to na_te.dros performed on 2015-02-12 04:23:05 has no hits.

BS10811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:31 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-PA 2986..3453 17..484 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:14 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-PA 2986..3453 17..484 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:25:29 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 3206..3676 13..484 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:56:07 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 3206..3676 13..484 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:56:07 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1311241..1311711 13..484 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:25:29 Download gff for BS10811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1311241..1311711 13..484 98   Minus

BS10811.5prime Sequence

900 bp (789 high quality bases) assembled on 2006-04-19

> BS10811.5prime
GAAGTTATCAGTCGACATGTCCAACTGCATAGAGATCCCTTTGCAGGACA
CCGATGAGGTGATCGAGGTGGACCCGGATCAACTGCCCGACTGTCCAGAG
GTGTTGAGCATTCTCAAGCAGGAGCGGGCGCCCCTGCACGTTTGGGTCAA
TGTGGCGCTTGCCTACTACAAACAAAAGAAGACGGAGGACTTTGTCACGC
TGCTGGAGGAGTCGCGCAGCGATGACGCCACCAAGGAGTACCGCGACTCG
GACAAGGACCTCATGCGTGCCCTGGACATGCTCGCTGCCCACTATGTCCA
GGAGGCGTATCGGGAGAAGTCCAAGGACAAGAAACGAGAGCTCTTCATGA
AGGCCACCAACTTGTACACCAGTGCCGACAAGATTATCATGTACGACCAG
AGCCATCTGTTGGGCAGGGCCTACTTCTGTCTGCTGGAGGGCGACAAGAT
GGACCAGGCGGATGCCCAGTTCAACTTTGTGCTTAACCAGTCCCCCTCGA
ATATTCCCTCCCTACTGGGAAAGGCCTGCATCGCGTTCAATCGCAAAGAT
TACCGTGGAGCGATGGCCTTCTACAAGAAGGCCTTGCGTACAAATCCAAA
CTGTCCTGCGAATGTGAGAATCGGCATGGCCCATTGCTTCCTGAAGATGG
GCAATCCCGAGAAGGCCAAGCTAGCCTTTGAACGAGCGCTCCAGCTGGAT
CAGCAGTGTGTGGGCGCTTTGATTGGCCTGGCCGTTCTCAAGCTGAATCA
ACTTGAGCCCGAATCCAACAAACTGGGTGTCCAGATGCTCTCCAAGGCGT
ACACCATCGACAATGCCAATCCCATGGTGCTCAATCACCTGGCCAATCAC
TTCTTCTTTAAGAAGGACTATCAGAAAGTCCACCACCTGGCGCTGCACGC

BS10811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-PB 3453 CG2469-RB 1..884 17..900 4420 100 Plus
CG2469-PA 3453 CG2469-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-RA 3702 CG2469-RA 152..1036 16..900 4425 100 Plus
CG2469-RB 3770 CG2469-RB 220..1104 16..900 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1307963..1308706 157..900 3720 100 Plus
3L 28110227 3L 1307802..1307902 57..157 505 100 Plus
3L 28110227 3L 1307699..1307745 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-12 19:46:56 has no hits.

BS10811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:32 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:15 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-PA 1..884 17..900 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:50:33 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 220..1104 16..900 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:57:51 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2469-RB 220..1104 16..900 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:57:51 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1307699..1307741 16..58 100 -> Plus
3L 1307804..1307902 59..157 100 -> Plus
3L 1307964..1308706 158..900 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:33 Download gff for BS10811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1307699..1307741 16..58 100 -> Plus
arm_3L 1307804..1307902 59..157 100 -> Plus
arm_3L 1307964..1308706 158..900 100   Plus

BS10811.pep Sequence

Translation from 16 to 3468

> BS10811.pep
MSNCIEIPLQDTDEVIEVDPDQLPDCPEVLSILKQERAPLHVWVNVALAY
YKQKKTEDFVTLLEESRSDDATKEYRDSDKDLMRALDMLAAHYVQEAYRE
KSKDKKRELFMKATNLYTSADKIIMYDQSHLLGRAYFCLLEGDKMDQADA
QFNFVLNQSPSNIPSLLGKACIAFNRKDYRGAMAFYKKALRTNPNCPANV
RIGMAHCFLKMGNPEKAKLAFERALQLDQQCVGALIGLAVLKLNQLEPES
NKLGVQMLSKAYTIDNANPMVLNHLANHFFFKKDYQKVHHLALHAFHNTE
NEAMRAESCYQLARSFHAQSDYDQAFQYYYQSTQIAPANFVLPHYGLGQM
YIYRGDTENAAQCFEKVLKIQPGNYETMKILGSLYAHSNSQTKRDMAKTH
LKKVTEQFPEDIEAWIELAQILEQNDLQASLSAYGTASSILRDKAKYEIP
AEIQNNVASLHYRLGNLKMAKLTLESALKHATSEMDKDVKYYESIQVTMK
YNLARLNEAMSSYDVADKLYKEILKEHPNYIDCYLRLGCMARDKGLIFVA
SDFFKDALNINNDNPDARSLLGNLHLAKMQFALGQKNFETILKNPSTSTD
AYSLIALGNFSLQTLHQPSRDKEKERKHQEKALAIFKQVLRNDPRNIWAT
NGIGAVLAHKGCVIEARDIFAQVREATADFCDVWLNIAHVYVEQKQYISA
IQMYENCMKKFYKHNNVEVMQYLARAYLRANKLVDAKAVLLKARRVAPQD
TVLLFNIAVVLSRLAMAILKDEKSTLEIVLQAVHELELAQKYFQYLSVHG
DKNRFNIEVAGIEASTCQDLLSQAQYHVGRARRIDEEERSLRRKQEEERE
AFKIKVAEQRKRREEEAKTSRDQLLAKRQEYVEKTKNMLIIADAPPEKER
KKGGGRGRKDDYISGTESDNDGARREGERPSKKKGKGERKKGGGRKRKTE
KYESDSEEEPGASGKSGKKKGKKPKPVKESKEKLSAKQRLKVLSKETIST
SESESDGKRSKSRSRSRSRNRSGSRSGSASRSGSDREASRKRSRSRSGSG
SGSDSDEATKRKRARNRIESGGESDRSGSRARSKSSSRSRSRSKSGSRSR
SRSKSGSRSRSRSKSGSRSRSRSPSGSRSRSRSGSRSKSESRSRSGSPEK
*

BS10811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2469-PA 1150 CG2469-PA 1..1150 1..1150 5855 100 Plus
CG2469-PB 1150 CG2469-PB 1..1150 1..1150 5855 100 Plus
CG9899-PA 922 CG9899-PA 5..911 40..970 1044 29.9 Plus
CG9915-PC 820 CG9915-PC 119..369 898..1147 320 41.3 Plus
CG9915-PB 820 CG9915-PB 119..369 898..1147 320 41.3 Plus
CG9915-PC 820 CG9915-PC 174..453 900..1147 300 39.7 Plus
CG9915-PC 820 CG9915-PC 141..470 827..1145 268 32.7 Plus
CG9915-PC 820 CG9915-PC 52..297 896..1147 264 36.2 Plus
CG9915-PC 820 CG9915-PC 71..346 892..1147 254 39.3 Plus
CG9915-PC 820 CG9915-PC 260..497 900..1146 209 32.4 Plus
CG9915-PC 820 CG9915-PC 245..547 839..1122 166 26.2 Plus