Clone BS10816 Report

Search the DGRC for BS10816

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptVav-RA
Protein status:BS10816.pep: full length peptide match
Sequenced Size:2414

Clone Sequence Records

BS10816.complete Sequence

2414 bp assembled on 2010-02-11

GenBank Submission: KX804777

> BS10816.complete
GAAGTTATCAGTCGACATGGCCAGCAGCAGTAGCAGCAACAGTTTTGGGG
GCGTGGCCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTG
ACCAGGTGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGC
CGAGATCCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCA
ACCTGGTCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAAT
CGCAAGCCGCAAATGGCACAGTTCCTGTGCAGCAAGAACATCAAGTTGTT
CCTGGACGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCG
AGCCGACAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACG
CTCTCCAAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCT
TATTGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACG
AGGCCATCTACAAGGACCTGCATTCCACTACCACCGACAATATTGCATGC
AATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCA
AGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAGACCGCCTCGTCGA
CGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAG
TCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCC
GCTGGAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCA
TCAGAGAGCTGGTCGACATCCATACAAAGTTCCTGGACAAACTAAGGGAA
TCGCTGACGCCCAATGCCAAAGTGAAGATGGCCCAGGTGTTTCTCGACTT
CCGCGAACCCTTCCTCATCTACGGCGAGTTCTGCTCCCTCCTGCTGGGCG
CCATTGACTATTTGGCGGATGTGTGCAAGAAGAACCAGATCATCGATCAG
CTGGTGCAGAAGTGCGAGCGGGACTACAATGTGGGCAAACTGCAGCTACG
TGACATACTCTCAGTGCCCATGCAGCGCATTCTCAAGTACCATCTGCTGC
TGGACAAGCTGGTGAAGGAGACATCGCCGCTGCACGACGATTACCGCTCG
CTGGAGCGGGCCAAGGAGGCGATGATAGACGTGTCGCAATATATCAACGA
GGTGAAACGCGACTCCGATCACCTGGTCATCATACAGAAGGTGAAGGACA
GCATCTGCGATATTCATCTGCTGCAGAATGGCAACGGCAGCGATCTGCTG
CAGTACGGCCGCCTGCTTCTCGACGGTGAGCTGCACATTAAGGCGCACGA
GGACCAGAAGACCAAGCTGCGATACGCCTTCGTTTTCGACAAGATCCTCA
TCATGGTGAAGGCGCTGCATATCAAGACGGGCGACATGCAGTACACCTAC
CGCGACTCCCACAACCTGGCCGACTATCGCGTGGAGCAGAGCCATTCGCG
ACGCACTATTGGCCGCGATACGCGATTCAAGTACCAGCTCCTCCTGGCCC
GCAAGTCGGGCAAGACAGCCTTCACTTTGTACCTGAAATCGGAGCACGAG
CGGGACAAGTGGCGCAAGGCGCTCACCGAGGCCATGGAAAGCCTGGAACC
GCCTGGCTGCCAAAGCACAGACCACAAAATGGAGATCTACACGTTTGACG
CCCCGACAACGTGCCGTCACTGCTCCAAGTTCCTCAAGGGCCGCATCCAC
CAGGGCTATCGATGCAAGGTGTGCCAGATCAGCGTGCACAAGGGCTGCAT
CTCGTCGACGGGTCGCTGCAAACAGAATCCGGTAAGTGTGCCGCCACCCG
TCTGCGATCGTCAGTTGTCCGAGTTCAATTGGTTTGCGGGCAACATGGAT
CGGGAGACGGCGGCCCACCGGCTGGAGAACCGGCGCATAGGCACCTACCT
GTTGCGAGTTCGTCCGCAGGGCCCATCCACTGCCCACGAGACGATGTATG
CGCTTAGCCTAAAGACCGATGATAATGTGATCAAGCACATGAAAATCAAC
CAGGAGAACTCCGGCGACTCCATGCTGTACTGCTTATCCTCGCGAAGGCA
TTTCAAGACCATTGTCGAGCTGGTCTCCTATTATGAACGCAACGATCTGG
GCGAGAACTTTGCGGGGCTCAATCAGTCGCTGCAGTGGCCCTACAAGGAG
GTGATCGCCACCGCTCTCTACGACTACGAACCAAAGGCGGGCAGCAATCA
GCTGCAGCTGCGCACTGACTGCCAGGTGCTGGTCATTGGCAAGGATGGGG
ACAGCAAGGGCTGGTGGCGTGGCAAAATCGGCGATACGGTGGGCTACTTT
CCCAAGGAGTATGTGCAGGAGCAGAAATTGGCCAGCGAAGAGCTTTGAAA
GCTTTCTAGACCAT

BS10816.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:13:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 2382 CG7893-PB 1..2382 17..2398 11910 100 Plus
Vav-RA 2382 CG7893-PA 1..2382 17..2398 11910 100 Plus
Vav-RC 3006 CG7893-PC 1137..3006 529..2398 9350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 4603 CG7893-RB 516..2901 13..2398 11915 100 Plus
Vav-RA 3412 CG7893-RA 516..2901 13..2398 11915 100 Plus
Vav-RC 4036 CG7893-RC 1656..3525 529..2398 9350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19269721..19270551 806..1636 4155 100 Plus
X 23542271 X 19270622..19271000 1636..2014 1895 100 Plus
X 23542271 X 19262335..19262593 13..271 1280 99.6 Plus
X 23542271 X 19263130..19263314 269..453 925 100 Plus
X 23542271 X 19271282..19271461 2166..2345 885 99.4 Plus
X 23542271 X 19269482..19269652 636..806 855 100 Plus
X 23542271 X 19271073..19271226 2014..2167 770 100 Plus
X 23542271 X 19269257..19269365 529..637 545 100 Plus
X 23542271 X 19263881..19263955 454..528 375 100 Plus
X 23542271 X 19271518..19271578 2338..2398 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:13:54 has no hits.

BS10816.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-11 10:12:15 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
vav-RB 509..2889 17..2397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:43 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 520..2900 17..2397 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:06 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
vav-RB 509..2889 17..2397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:43 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 520..2900 17..2397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:43 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
X 19271519..19271577 2339..2397 100   Plus
X 19270622..19270999 1636..2013 100 -> Plus
X 19271073..19271225 2014..2166 100 -> Plus
X 19262339..19262593 17..271 100 -> Plus
X 19263133..19263314 272..453 100 -> Plus
X 19263881..19263955 454..528 100 -> Plus
X 19269257..19269365 529..637 100 -> Plus
X 19269484..19269651 638..805 100 -> Plus
X 19269721..19270550 806..1635 100 -> Plus
X 19271283..19271454 2167..2338 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:43 Download gff for BS10816.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19156372..19156626 17..271 100 -> Plus
arm_X 19157166..19157347 272..453 100 -> Plus
arm_X 19157914..19157988 454..528 100 -> Plus
arm_X 19163290..19163398 529..637 100 -> Plus
arm_X 19163517..19163684 638..805 100 -> Plus
arm_X 19163754..19164583 806..1635 100 -> Plus
arm_X 19164655..19165032 1636..2013 100 -> Plus
arm_X 19165106..19165258 2014..2166 100 -> Plus
arm_X 19165316..19165487 2167..2338 100 -> Plus
arm_X 19165552..19165610 2339..2397 100   Plus

BS10816.3prime Sequence

1003 bp (840 high quality bases) assembled on 2006-04-19

> BS10816.3prime
ATGGTCTAGAAAGCTTTCAAAGCTCTTCGCTGGCCAATTTCTGCTCCTGC
ACATACTCCTTGGGAAAGTAGCCCACCGTATCGCCGATTTTGCCACGCCA
CCAGCCCTTGCTGTCCCCATCCTTGCCAATGACCAGCACCTGGCAGTCAG
TGCGCAGCTGCAGCTGATTGCTGCCCGCCTTTGGTTCGTAGTCGTAGAGA
GCGGTGGCGATCACCTCCTTGTAGGGCCACTGCAGCGACTGATTGAGCCC
CGCAAAGTTCTCGCCCAGATCGTTGCGTTCATAATAGGAGACCAGCTCGA
CAATGGTCTTGAAATGCCTTCGCGAGGATAAGCAGTACAGCATGGAGTCG
CCGGAGTTCTCCTGGTTGATTTTCATGTGCTTGATCACATTATCATCGGT
CTTTAGGCTAAGCGCATACATCGTCTCGTGGGCAGTGGATGGGCCCTGCG
GACGAACTCGCAACAGGTAGGTGCCTATGCGCCGGTTCTCCAGCCGGTGG
GCCGCCGTCTCCCGATCCATGTTGCCCGCAAACCAATTGAACTCGGACAA
CTGACGATCGCAGACGGGTGGCGGCACACTTACCGGATTCTGTTTGCAGC
GACCCGTCGACGAGATGCAGCCCTTGTGCACGCTGATCTGGCACACCTTG
CATCGATAGCCCTGGTGGATGCGGCCCTTGAGGAACTTGGAGCAGTGACG
GCACGTTGTCGGGGCGTCAAACGTGTAGATCTCCATTTTGTGGTCTGTGC
TTTGGCAGCCAGGCGGTTCCAGGCTTTCCATGGCCTCGGTGAGCGCCTTG
CGCCACTTGTCCCGCTCGTGCTCCGATTTCAGGTACAAAGTGAAGGCTGT
CTTGCCCGACTTGCGGGCCAGGAGGAGCTGGTACTTGAATCGCGTATCGC
GGCCAATAGTGCGTCGCGAATGGCTCTGCTCCACGCGATAGTCCGGCAGG
TTGTGGGAGTCGCGGTAGGTGTACTGCATGTCGCCCGTCTTGATATGCAG
CGC

BS10816.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7893-PA 2382 vav-RA 1396..2382 1003..17 4885 99.7 Minus
CG7893-PB 2382 vav-RB 1396..2382 1003..17 4885 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 19:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RD 3925 CG7893-RD 2428..3414 1003..17 4905 99.8 Minus
Vav-RC 4036 CG7893-RC 2539..3525 1003..17 4905 99.8 Minus
Vav-RB 4603 CG7893-RB 1915..2901 1003..17 4905 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 19:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19270622..19271000 779..401 1895 100 Minus
X 23542271 X 19270327..19270551 1003..779 1095 99.1 Minus
X 23542271 X 19271282..19271461 249..70 885 99.4 Minus
X 23542271 X 19271073..19271226 401..248 770 100 Minus
X 23542271 X 19271518..19271578 77..17 305 100 Minus
Blast to na_te.dros performed on 2015-01-31 19:57:48 has no hits.

BS10816.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:40 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
vav-PB 1396..2382 17..1003 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:27 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7893-PB 1396..2382 17..1003 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 11:34:34 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RB 1915..2905 11..1003 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 22:47:27 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RB 1915..2905 11..1003 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 22:47:27 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19270327..19270550 780..1003 99 -> Minus
X 19270622..19270999 402..779 100 -> Minus
X 19271073..19271225 249..401 100 -> Minus
X 19271283..19271454 77..248 100 -> Minus
X 19271519..19271582 11..76 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 11:34:34 Download gff for BS10816.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19164360..19164583 780..1003 99 -> Minus
arm_X 19164655..19165032 402..779 100 -> Minus
arm_X 19165106..19165258 249..401 100 -> Minus
arm_X 19165316..19165487 77..248 100 -> Minus
arm_X 19165552..19165615 11..76 95   Minus

BS10816.5prime Sequence

946 bp (801 high quality bases) assembled on 2006-04-19

> BS10816.5prime
GAAGTTATCAGTCGACATGGCCAGCAGCAGTAGCAGCAACAGTTTTGGGG
GCGTGGCCGGCGTGAACGGGGATCTGTGGCGCGAGTGCGTCGCCTGGCTG
ACCAGGTGCAAGGTCATTCCGCCCGACCACAAGGCCGCCCAGCCGGACGC
CGAGATCCGCATCCTGGCGATGACGCTGCGCGACGGCGTGCTGCTCTGCA
ACCTGGTCATCCACCTGGACCCCAGCAGCTTGGATCCGCGCGAGTTCAAT
CGCAAGCCGCAAATGGCACAGTTCCTGTGCAGCAAGAACATCAAGTTGTT
CCTGGACGTGTGCCACAACAACTTCGGGATCCGGGACGCCGATCTCTTCG
AGCCGACAATGCTGTACGACCTGACCAACTTCCACCGTGTCCTCATCACG
CTCTCCAAGTTGTCGCAGTGCCGCAAGGTGCAGCAACTGCATCCGGATCT
TATTGGCTTCAACCTACAGCTTTCGCCCACGGAGCGTTCCCATTCGGACG
AGGCCATCTACAAGGACCTGCATTCCACTACCACCGACAATATTGCATGC
AATGGAACCGGTTACGACCACACCAACACAAAAGAGGAGGAGGTGTACCA
AGACCTGTGCGCCCTGCACAGGACGAGTAGAAGCCAGACCGCCTCGTCGA
CGAGCTTTGAGCAGCGCGACTATGTCATCCGCGAGCTGATCGACACGGAG
TCCAATTACCTGGACGTTCTCACTGCGCTGAAGACCAAGTTTATGGGTCC
GCTGGAGCGGCATCTCAACCAGGACGAGCTGCGTCTCATATTCCCGCGCA
TCAGAGAGCTGGTCGACATCCATACAAAGTTCCTGGACAAACTAAGGGAA
TCGCTGACGCCCAATGCCAAAGTGAAGATGGCCCANGTGTTTCTCGACTT
CCGCGAACCCTTCCTCATCTACGGCGAGTTCTGCTCCCTCCTGCTG

BS10816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7893-PA 2382 vav-RA 1..930 17..946 4631 99.8 Plus
CG7893-PB 2382 vav-RB 1..930 17..946 4631 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-RB 4603 CG7893-RB 516..1449 13..946 4644 99.8 Plus
Vav-RA 3412 CG7893-RA 516..1449 13..946 4644 99.8 Plus
Vav-RD 3925 CG7893-RD 516..1031 13..528 2565 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19262335..19262593 13..271 1280 99.6 Plus
X 23542271 X 19263130..19263314 269..453 925 100 Plus
X 23542271 X 19269482..19269652 636..806 855 100 Plus
X 23542271 X 19269721..19269861 806..946 694 99.3 Plus
X 23542271 X 19269257..19269365 529..637 545 100 Plus
X 23542271 X 19263881..19263955 454..528 375 100 Plus
Blast to na_te.dros performed 2015-02-11 18:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
Doc3-element 4740 Doc3-element DOC3 4740bp 1596..1634 532..570 114 76.9 Plus

BS10816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:41 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
vav-PB 1..930 17..946 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:29 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7893-PB 1..930 17..946 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:39:26 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 516..1449 13..946 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:55:40 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
Vav-RA 516..1449 13..946 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:55:40 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19269484..19269651 638..805 100 -> Plus
X 19269721..19269861 806..946 99   Plus
X 19262335..19262593 13..271 99 -> Plus
X 19263133..19263314 272..453 100 -> Plus
X 19263881..19263955 454..528 100 -> Plus
X 19269257..19269365 529..637 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:39:26 Download gff for BS10816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19156368..19156626 13..271 99 -> Plus
arm_X 19157166..19157347 272..453 100 -> Plus
arm_X 19157914..19157988 454..528 100 -> Plus
arm_X 19163290..19163398 529..637 100 -> Plus
arm_X 19163517..19163684 638..805 100 -> Plus
arm_X 19163754..19163894 806..946 99   Plus

BS10816.pep Sequence

Translation from 16 to 2397

> BS10816.pep
MASSSSSNSFGGVAGVNGDLWRECVAWLTRCKVIPPDHKAAQPDAEIRIL
AMTLRDGVLLCNLVIHLDPSSLDPREFNRKPQMAQFLCSKNIKLFLDVCH
NNFGIRDADLFEPTMLYDLTNFHRVLITLSKLSQCRKVQQLHPDLIGFNL
QLSPTERSHSDEAIYKDLHSTTTDNIACNGTGYDHTNTKEEEVYQDLCAL
HRTSRSQTASSTSFEQRDYVIRELIDTESNYLDVLTALKTKFMGPLERHL
NQDELRLIFPRIRELVDIHTKFLDKLRESLTPNAKVKMAQVFLDFREPFL
IYGEFCSLLLGAIDYLADVCKKNQIIDQLVQKCERDYNVGKLQLRDILSV
PMQRILKYHLLLDKLVKETSPLHDDYRSLERAKEAMIDVSQYINEVKRDS
DHLVIIQKVKDSICDIHLLQNGNGSDLLQYGRLLLDGELHIKAHEDQKTK
LRYAFVFDKILIMVKALHIKTGDMQYTYRDSHNLADYRVEQSHSRRTIGR
DTRFKYQLLLARKSGKTAFTLYLKSEHERDKWRKALTEAMESLEPPGCQS
TDHKMEIYTFDAPTTCRHCSKFLKGRIHQGYRCKVCQISVHKGCISSTGR
CKQNPVSVPPPVCDRQLSEFNWFAGNMDRETAAHRLENRRIGTYLLRVRP
QGPSTAHETMYALSLKTDDNVIKHMKINQENSGDSMLYCLSSRRHFKTIV
ELVSYYERNDLGENFAGLNQSLQWPYKEVIATALYDYEPKAGSNQLQLRT
DCQVLVIGKDGDSKGWWRGKIGDTVGYFPKEYVQEQKLASEEL*

BS10816.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vav-PB 793 CG7893-PB 1..793 1..793 4183 100 Plus
Vav-PA 793 CG7893-PA 1..793 1..793 4183 100 Plus
Vav-PC 1001 CG7893-PC 324..1001 132..793 3296 93.2 Plus
Vav-PD 964 CG7893-PD 359..964 190..793 3109 97.7 Plus
Vav-PC 1001 CG7893-PC 1..171 1..171 905 100 Plus
Vav-PD 964 CG7893-PD 1..171 1..171 905 100 Plus
RhoGEF2-PE 2205 CG9635-PE 1183..1444 215..464 171 25.6 Plus