Clone BS10819 Report

Search the DGRC for BS10819

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptl(1)G0232-RA
Protein status:BS10819.pep: full length peptide match
Sequenced Size:2516

Clone Sequence Records

BS10819.3prime Sequence

987 bp (849 high quality bases) assembled on 2006-04-19

> BS10819.3prime
ATGGTCTAGAAAGCTTCTACTCCGAGTCCGGTTCGCGCTCATCGAAGCCA
GCCAGATCGACCGTCTGTAGCATTCCACGCGAATATGCGTATTCGATGAG
GGCCAGGTGACAGAACACGTACTGATCGGGCATCTGAATGGAGTAGGCTC
GCTGCGACCGGATCTTCTCAACCGTTCCACGTATGTCCGCCGTGCCCACG
TCCTCCAGGCGCGATATGCAAATGTCCAGGGTGATGAATGTACCTGTGCG
TCCAATGCCTGCACTGCAGTGCACCACAATGGGCGGTCCACGGGGATGAC
CCGCCCAGGTGTCGCCCAGTCCTTGGACAAGCTGCGCCTGCTTCTCACGC
ACCTTCTGCAGGAAGTTCAGCATGGCCATGGCCGAGCTGGGAACGCCATA
GTCCGGCCAGCTGGTGAACTGCCAATGTGAGACATTGCGAATTTCGTCAG
TCTTTATGTTTCTCAATTCTAACGAGGCAACCATATAGTCCTCGTTGCAC
TCAACGCTAATTGTTCGCACATGGTAGTCGCCAAACTCTAAGGAACTTTC
TTCAGTCGGCTCCCAGTACTGGCCGCATTTCACGCGTCCGCGCTCCATCA
CGCGCGTCGTCATCACTATAACTAAACAATGTTGTTCCCAGATCATGCGC
CAAAAGTCCTGGGATGTCTTTGGTAATGGACCTTGAGTTGAAATATAGGC
ATTCTTTTGTTTGTAGCCATCGACGAAATTCGCATTAATATAATCCGACG
GCTCGTCGCCGTCTTCGTGTGCCAGAACAACTCGACTGTGATCGTAGCAG
AGGACGTCTGTGTAGCGATTCTTGGTCAGATTGGCCCGCATTCTCGCATG
CAGAAAAGTGCCCTCGGGCGCCCTATTCCGAATGTCCGCGTACTCCTTAA
TCAGACCATGGCGTCCGCGCTGCTTAACCATCTGAACAATCTGATCAATG
GGCTGGGGATCGCCCTCTTGACCGGCGAGACTATCAT

BS10819.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32697-PD 1497 l(1)G0232-RD 527..1497 987..17 4805 99.7 Minus
CG32697-PB 2409 l(1)G0232-RB 1439..2409 987..17 4805 99.7 Minus
CG32697-PC 2394 l(1)G0232-RC 1424..2394 987..17 4805 99.7 Minus
CG32697-PA 2484 l(1)G0232-RA 1514..2484 987..17 4805 99.7 Minus
CG32697-PE 1497 l(1)G0232-RE 527..1497 987..17 4805 99.7 Minus
CG32697-PF 1794 l(1)G0232-RF 824..1794 987..17 4805 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RH 2498 CG32697-RH 1144..2114 987..17 4825 99.8 Minus
l(1)G0232-RG 5668 CG32697-RG 1887..2857 987..17 4825 99.8 Minus
l(1)G0232-RI 2203 CG32697-RI 849..1819 987..17 4825 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9629668..9629899 452..683 1160 100 Plus
X 23542271 X 9629106..9629336 17..247 1155 100 Plus
X 23542271 X 9629394..9629605 242..453 1060 100 Plus
X 23542271 X 9629961..9630125 680..844 825 100 Plus
X 23542271 X 9630194..9630338 843..987 695 98.6 Plus
Blast to na_te.dros performed on 2015-02-11 12:03:00 has no hits.

BS10819.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:46 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32697-PF 824..1794 17..987 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:37 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32697-PF 824..1794 17..987 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:21:12 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RI 849..1819 17..987 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:42:01 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RI 849..1819 17..987 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:42:01 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9629106..9629332 17..243 100 <- Plus
X 9629396..9629603 244..451 100 <- Plus
X 9629668..9629897 452..681 100 <- Plus
X 9629963..9630123 682..842 100 <- Plus
X 9630194..9630338 843..987 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:21:12 Download gff for BS10819.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9523139..9523365 17..243 100 <- Plus
arm_X 9523429..9523636 244..451 100 <- Plus
arm_X 9523701..9523930 452..681 100 <- Plus
arm_X 9523996..9524156 682..842 100 <- Plus
arm_X 9524227..9524371 843..987 98   Plus

BS10819.5prime Sequence

446 bp (445 high quality bases) assembled on 2006-04-19

> BS10819.5prime
GAAGTTATCAGTCGACATGCAGCAAACGCAATGGAATAAGGACAGGCAGG
AGGATAGAAACAACAATAGCGGCAGCAGGAGCGAGCAGGATAGCGGCTGT
CATCGGCGTCTTTTCCTGTGCATTGCCAAGGCTGTGAAACAATTCATTGA
TCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATCCC
CGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAGTA
GTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGTGG
AGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGNTG
NGNCTGTGNGGNGCCNCNTCTCGCNTNCGNCNGCCGTGNNGTTTTTGTGC
GCCCGGTGNTTTGTTGTCCCGCGGGCGGTCTCTCTGTNCGGCCNGC

BS10819.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32697-PA 2484 l(1)G0232-RA 1..389 17..405 1673 96.4 Plus
CG32697-PB 2409 l(1)G0232-RB 38..314 129..405 1113 94.9 Plus
CG32697-PC 2394 l(1)G0232-RC 25..299 131..405 1103 94.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RA 3046 CG32697-RA 179..567 17..405 1787 96.4 Plus
l(1)G0232-RB 2969 CG32697-RB 214..490 129..405 1227 94.9 Plus
l(1)G0232-RG 5668 CG32697-RG 487..762 130..405 1222 94.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9644093..9644369 405..129 1227 94.9 Minus
X 23542271 X 9650484..9650598 131..17 575 100 Minus
Blast to na_te.dros performed on 2015-02-13 09:13:41 has no hits.

BS10819.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:47 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32697-PA 1..349 17..365 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:38 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32697-PA 1..349 17..365 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:41 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 174..527 11..365 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:54 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 174..527 11..365 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:54 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9644133..9644367 131..365 97 <- Minus
X 9650485..9650603 11..130 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:41 Download gff for BS10819.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9538166..9538400 131..365 97 <- Minus
arm_X 9544518..9544636 11..130 97   Minus

BS10819.complete Sequence

2516 bp assembled on 2010-05-10

GenBank Submission: KX803328

> BS10819.complete
GAAGTTATCAGTCGACATGCAGCAAACGCAATGGAATAAGGACAGGCAGG
AGGATAGAAACAACAATAGCGGCAGCAGGAGCGAGCAGGATAGCGGCTGT
CATCGGCGTCTTTTCCTGTGCATTGCCAAGGCTGTGAAACAATTCATTGA
TCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATCCC
CGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAGTA
GTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGTGG
AGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGCTG
CGCCTGTGAGGCGCCACATCTCGCATACGACAGCCGTGAAGTTTTTGTAC
GCCCGTAAATTTGATATACCACGAGCAGTCTCACTGTACGAACAGCATGA
ACAGATCCGCCTGAAGGAGTATCTATATAACATCGATCCGGATGTGGAGC
CCTTGCGCTCCGAGTTGCAGACCGGCAAGTTCACAATCCTGCCCGCACGC
ACTTCCAGTGGCGCTGCCATCGCCCTTTTCACCGCCAATCGACACAGTCC
GCTGAGCGTTTCGCACACAACCACGCTGCAGGGCATCGTCTATCAGCTGG
ACAGTGCGCTCCAGGATTCGGAGACGCAGCGTGCCGGGCTCGTTTTTATC
TACGACATGAGCGGCTCCAAGTATTCCAACTTCGACTACGACCTCTCCCA
GAAGATTCTCACACTGCTTAAGGGCGGCTATCCAGCGCGTCTGAAGAAGG
TCCTGATCGTGACGGCGCCACTGTGGTTCAAGGCACCCTTCAAGATCCTG
CGTCTGTTCGTGCGCGAGAAGCTGCGCGAGCGAGTGTTCACTGTATCGGT
GCCTCAATTGGCGCTGCACGTGCCGCGCAAGGCGCTGCCCATTCACTTGG
GTGGCACGCTGGAGGTCGATCACGCCACATGGTTGCTCAGCTGCCGCCAA
TCGATGACGAATCGTGAGGACGAGCTGCTGGCCAATATCGTGGGTGTGGG
CGGTGGATCCGGATCCGGTTCAGCAGCTGGATCAGCAGCAATTGTGTCCA
CCAATGGCACGGAAACCGAGGCCGCGACAACGGCAGCCACGATAATCAGC
GCCGTCCACCAGTTGGGCGATAATAATACCACCGTGGTGACGGTCAGCAA
TGGCGTCGGTCCAGCTGGATCGGCATCTGGCGGAGCAACGACAGCAGCGT
CGGCGGCGACGGAACCCAACGAAAATATCACAATCAACGGACTGAGTCCA
AGCCACCGTCAGGCGGCGAATAACAGCAGTAGCAGTAGCAGCAGTGCAGC
CACAGTGGCCAATCCCCTCAAGCTCAACACAAGTGGCTCCGCGGACAACA
ATAGTACCATCACGAACGCCACCACAGCTGCTGGAGCAGCCGGAGCAGCT
GCTGGCACCACCACCAATGGCGGCGGCGAGTTCTGGTCAGAGAATCCACC
CAGCAGCGCCTCATCCGGCTTCAGTGACGATGATAGTCTCGCCGGTCAAG
AGGGCGATCCCAAGCCCATTGATCAGATTGTTCAGATGGTTAAGCAGCGC
GGACGCCATGGTCTGATTAAGGAGTACGCGGACATTCGGAATAGGGCGCC
CGAGGGCACCTTTCTGCATGCGAGAATGCGGGCCAATCTGACCAAGAATC
GCTACACAGACGTCCTCTGCTACGATCACAGTCGAGTTGTTCTGGCACAC
GAAGACGGCGACGAGCCGTCGGATTATATTAATGCGAATTTCGTCGATGG
CTACAAACAAAAGAATGCCTATATTTCAACTCAAGGTCCATTACCAAAGA
CATCCCAGGACTTTTGGCGCATGATCTGGGAACAACATTGTTTAGTTATA
GTGATGACGACGCGCGTGATGGAGCGCGGACGCGTGAAATGCGGCCAGTA
CTGGGAGCCGACTGAAGAAAGTTCCTTAGAGTTTGGCGACTACCATGTGC
GAACAATTAGCGTTGAGTGCAACGAGGACTATATGGTTGCCTCGTTAGAA
TTGAGAAACATAAAGACTGACGAAATTCGCAATGTCTCACATTGGCAGTT
CACCAGCTGGCCGGACTATGGCGTTCCCAGCTCGGCCATGGCCATGCTGA
ACTTCCTGCAGAAGGTGCGTGAGAAGCAGGCGCAGCTTGTCCAAGGACTG
GGCGACACCTGGGCGGGTCATCCCCGTGGACCGCCCATTGTGGTGCACTG
CAGTGCAGGCATTGGACGCACAGGTACATTCATCACCCTGGACATTTGCA
TATCGCGCCTGGAGGACGTGGGCACGGCGGACATACGTGGAACGGTTGAG
AAGATCCGGTCGCAGCGAGCCTACTCCATTCAGATGCCCGATCAGTACGT
GTTCTGTCACCTGGCCCTCATCGAATACGCATATTCGCGTGGAATGCTAC
AGACGGTCGATCTGGCTGGCTTCGATGAGCGCGAACCGGACTCGGAGTAG
AAGCTTTCTAGACCAT

BS10819.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RA 2484 CG32697-PA 1..2484 17..2500 12420 100 Plus
l(1)G0232-RB 2409 CG32697-PB 38..2409 129..2500 11860 100 Plus
l(1)G0232-RG 2373 CG32697-PG 3..2373 130..2500 11855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-RA 3046 CG32697-RA 179..2662 17..2500 12420 100 Plus
l(1)G0232-RB 2969 CG32697-RB 214..2585 129..2500 11860 100 Plus
l(1)G0232-RG 5668 CG32697-RG 487..2857 130..2500 11855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9630194..9631097 1674..771 4520 100 Minus
X 23542271 X 9643957..9644369 541..129 2065 100 Minus
X 23542271 X 9643656..9643888 773..541 1165 100 Minus
X 23542271 X 9629668..9629899 2065..1834 1160 100 Minus
X 23542271 X 9629106..9629336 2500..2270 1155 100 Minus
X 23542271 X 9629394..9629605 2275..2064 1060 100 Minus
X 23542271 X 9629961..9630125 1837..1673 825 100 Minus
X 23542271 X 9650484..9650598 131..17 575 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:55:33 has no hits.

BS10819.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:31 Download gff for BS10819.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 160..2643 17..2500 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:04 Download gff for BS10819.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 179..2662 17..2500 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:33 Download gff for BS10819.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0232-RA 179..2662 17..2500 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:33 Download gff for BS10819.complete
Subject Subject Range Query Range Percent Splice Strand
X 9629668..9629897 1836..2065 100 <- Minus
X 9629963..9630123 1675..1835 100 <- Minus
X 9629396..9629603 2066..2273 100 <- Minus
X 9629106..9629332 2274..2500 100 <- Minus
X 9630194..9631095 773..1674 100 <- Minus
X 9643657..9643887 542..772 100 <- Minus
X 9643957..9644367 131..541 100 <- Minus
X 9650485..9650598 17..130 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:04 Download gff for BS10819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9523701..9523930 1836..2065 100 <- Minus
arm_X 9523996..9524156 1675..1835 100 <- Minus
arm_X 9523139..9523365 2274..2500 100 <- Minus
arm_X 9523429..9523636 2066..2273 100 <- Minus
arm_X 9524227..9525128 773..1674 100 <- Minus
arm_X 9537690..9537920 542..772 100 <- Minus
arm_X 9537990..9538400 131..541 100 <- Minus
arm_X 9544518..9544631 17..130 100   Minus

BS10819.pep Sequence

Translation from 16 to 2499

> BS10819.pep
MQQTQWNKDRQEDRNNNSGSRSEQDSGCHRRLFLCIAKAVKQFIDLCNNL
GANCSTTTATSPSTSSSSASSTQNLIAVVPPQLQQLQVQLPAPGGGGGAG
AGGGGGGGGGAAPVRRHISHTTAVKFLYARKFDIPRAVSLYEQHEQIRLK
EYLYNIDPDVEPLRSELQTGKFTILPARTSSGAAIALFTANRHSPLSVSH
TTTLQGIVYQLDSALQDSETQRAGLVFIYDMSGSKYSNFDYDLSQKILTL
LKGGYPARLKKVLIVTAPLWFKAPFKILRLFVREKLRERVFTVSVPQLAL
HVPRKALPIHLGGTLEVDHATWLLSCRQSMTNREDELLANIVGVGGGSGS
GSAAGSAAIVSTNGTETEAATTAATIISAVHQLGDNNTTVVTVSNGVGPA
GSASGGATTAASAATEPNENITINGLSPSHRQAANNSSSSSSSAATVANP
LKLNTSGSADNNSTITNATTAAGAAGAAAGTTTNGGGEFWSENPPSSASS
GFSDDDSLAGQEGDPKPIDQIVQMVKQRGRHGLIKEYADIRNRAPEGTFL
HARMRANLTKNRYTDVLCYDHSRVVLAHEDGDEPSDYINANFVDGYKQKN
AYISTQGPLPKTSQDFWRMIWEQHCLVIVMTTRVMERGRVKCGQYWEPTE
ESSLEFGDYHVRTISVECNEDYMVASLELRNIKTDEIRNVSHWQFTSWPD
YGVPSSAMAMLNFLQKVREKQAQLVQGLGDTWAGHPRGPPIVVHCSAGIG
RTGTFITLDICISRLEDVGTADIRGTVEKIRSQRAYSIQMPDQYVFCHLA
LIEYAYSRGMLQTVDLAGFDEREPDSE*

BS10819.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0232-PA 827 CG32697-PA 1..827 1..827 4289 100 Plus
l(1)G0232-PB 802 CG32697-PB 13..802 38..827 4081 99.9 Plus
l(1)G0232-PG 790 CG32697-PG 2..790 39..827 4080 100 Plus
l(1)G0232-PC 797 CG32697-PC 9..797 39..827 4080 100 Plus
l(1)G0232-PF 597 CG32697-PF 1..597 231..827 3103 100 Plus