Clone Sequence Records
BS10819.3prime Sequence
987 bp (849 high quality bases) assembled on 2006-04-19
> BS10819.3prime
ATGGTCTAGAAAGCTTCTACTCCGAGTCCGGTTCGCGCTCATCGAAGCCA
GCCAGATCGACCGTCTGTAGCATTCCACGCGAATATGCGTATTCGATGAG
GGCCAGGTGACAGAACACGTACTGATCGGGCATCTGAATGGAGTAGGCTC
GCTGCGACCGGATCTTCTCAACCGTTCCACGTATGTCCGCCGTGCCCACG
TCCTCCAGGCGCGATATGCAAATGTCCAGGGTGATGAATGTACCTGTGCG
TCCAATGCCTGCACTGCAGTGCACCACAATGGGCGGTCCACGGGGATGAC
CCGCCCAGGTGTCGCCCAGTCCTTGGACAAGCTGCGCCTGCTTCTCACGC
ACCTTCTGCAGGAAGTTCAGCATGGCCATGGCCGAGCTGGGAACGCCATA
GTCCGGCCAGCTGGTGAACTGCCAATGTGAGACATTGCGAATTTCGTCAG
TCTTTATGTTTCTCAATTCTAACGAGGCAACCATATAGTCCTCGTTGCAC
TCAACGCTAATTGTTCGCACATGGTAGTCGCCAAACTCTAAGGAACTTTC
TTCAGTCGGCTCCCAGTACTGGCCGCATTTCACGCGTCCGCGCTCCATCA
CGCGCGTCGTCATCACTATAACTAAACAATGTTGTTCCCAGATCATGCGC
CAAAAGTCCTGGGATGTCTTTGGTAATGGACCTTGAGTTGAAATATAGGC
ATTCTTTTGTTTGTAGCCATCGACGAAATTCGCATTAATATAATCCGACG
GCTCGTCGCCGTCTTCGTGTGCCAGAACAACTCGACTGTGATCGTAGCAG
AGGACGTCTGTGTAGCGATTCTTGGTCAGATTGGCCCGCATTCTCGCATG
CAGAAAAGTGCCCTCGGGCGCCCTATTCCGAATGTCCGCGTACTCCTTAA
TCAGACCATGGCGTCCGCGCTGCTTAACCATCTGAACAATCTGATCAATG
GGCTGGGGATCGCCCTCTTGACCGGCGAGACTATCAT
BS10819.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32697-PD | 1497 | l(1)G0232-RD | 527..1497 | 987..17 | 4805 | 99.7 | Minus |
CG32697-PB | 2409 | l(1)G0232-RB | 1439..2409 | 987..17 | 4805 | 99.7 | Minus |
CG32697-PC | 2394 | l(1)G0232-RC | 1424..2394 | 987..17 | 4805 | 99.7 | Minus |
CG32697-PA | 2484 | l(1)G0232-RA | 1514..2484 | 987..17 | 4805 | 99.7 | Minus |
CG32697-PE | 1497 | l(1)G0232-RE | 527..1497 | 987..17 | 4805 | 99.7 | Minus |
CG32697-PF | 1794 | l(1)G0232-RF | 824..1794 | 987..17 | 4805 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RH | 2498 | CG32697-RH | 1144..2114 | 987..17 | 4825 | 99.8 | Minus |
l(1)G0232-RG | 5668 | CG32697-RG | 1887..2857 | 987..17 | 4825 | 99.8 | Minus |
l(1)G0232-RI | 2203 | CG32697-RI | 849..1819 | 987..17 | 4825 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9629668..9629899 | 452..683 | 1160 | 100 | Plus |
X | 23542271 | X | 9629106..9629336 | 17..247 | 1155 | 100 | Plus |
X | 23542271 | X | 9629394..9629605 | 242..453 | 1060 | 100 | Plus |
X | 23542271 | X | 9629961..9630125 | 680..844 | 825 | 100 | Plus |
X | 23542271 | X | 9630194..9630338 | 843..987 | 695 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:03:00 has no hits.
BS10819.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:46 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32697-PF | 824..1794 | 17..987 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:37 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32697-PF | 824..1794 | 17..987 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:21:12 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RI | 849..1819 | 17..987 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:42:01 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RI | 849..1819 | 17..987 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:42:01 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9629106..9629332 | 17..243 | 100 | <- | Plus |
X | 9629396..9629603 | 244..451 | 100 | <- | Plus |
X | 9629668..9629897 | 452..681 | 100 | <- | Plus |
X | 9629963..9630123 | 682..842 | 100 | <- | Plus |
X | 9630194..9630338 | 843..987 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:21:12 Download gff for
BS10819.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9523139..9523365 | 17..243 | 100 | <- | Plus |
arm_X | 9523429..9523636 | 244..451 | 100 | <- | Plus |
arm_X | 9523701..9523930 | 452..681 | 100 | <- | Plus |
arm_X | 9523996..9524156 | 682..842 | 100 | <- | Plus |
arm_X | 9524227..9524371 | 843..987 | 98 | | Plus |
BS10819.5prime Sequence
446 bp (445 high quality bases) assembled on 2006-04-19
> BS10819.5prime
GAAGTTATCAGTCGACATGCAGCAAACGCAATGGAATAAGGACAGGCAGG
AGGATAGAAACAACAATAGCGGCAGCAGGAGCGAGCAGGATAGCGGCTGT
CATCGGCGTCTTTTCCTGTGCATTGCCAAGGCTGTGAAACAATTCATTGA
TCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATCCC
CGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAGTA
GTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGTGG
AGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGNTG
NGNCTGTGNGGNGCCNCNTCTCGCNTNCGNCNGCCGTGNNGTTTTTGTGC
GCCCGGTGNTTTGTTGTCCCGCGGGCGGTCTCTCTGTNCGGCCNGC
BS10819.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32697-PA | 2484 | l(1)G0232-RA | 1..389 | 17..405 | 1673 | 96.4 | Plus |
CG32697-PB | 2409 | l(1)G0232-RB | 38..314 | 129..405 | 1113 | 94.9 | Plus |
CG32697-PC | 2394 | l(1)G0232-RC | 25..299 | 131..405 | 1103 | 94.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:13:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RA | 3046 | CG32697-RA | 179..567 | 17..405 | 1787 | 96.4 | Plus |
l(1)G0232-RB | 2969 | CG32697-RB | 214..490 | 129..405 | 1227 | 94.9 | Plus |
l(1)G0232-RG | 5668 | CG32697-RG | 487..762 | 130..405 | 1222 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:13:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9644093..9644369 | 405..129 | 1227 | 94.9 | Minus |
X | 23542271 | X | 9650484..9650598 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:13:41 has no hits.
BS10819.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:47 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32697-PA | 1..349 | 17..365 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:38 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32697-PA | 1..349 | 17..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:38:41 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RA | 174..527 | 11..365 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:53:54 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RA | 174..527 | 11..365 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:53:54 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9644133..9644367 | 131..365 | 97 | <- | Minus |
X | 9650485..9650603 | 11..130 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:38:41 Download gff for
BS10819.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9538166..9538400 | 131..365 | 97 | <- | Minus |
arm_X | 9544518..9544636 | 11..130 | 97 | | Minus |
BS10819.complete Sequence
2516 bp assembled on 2010-05-10
GenBank Submission: KX803328
> BS10819.complete
GAAGTTATCAGTCGACATGCAGCAAACGCAATGGAATAAGGACAGGCAGG
AGGATAGAAACAACAATAGCGGCAGCAGGAGCGAGCAGGATAGCGGCTGT
CATCGGCGTCTTTTCCTGTGCATTGCCAAGGCTGTGAAACAATTCATTGA
TCTCTGCAACAATCTAGGTGCTAACTGCAGCACGACGACAGCCACATCCC
CGTCAACTTCCTCCTCCTCAGCCAGCAGCACGCAGAACTTAATAGCAGTA
GTGCCGCCACAGTTGCAGCAGCTGCAGGTGCAATTACCGGCGCCAGGTGG
AGGAGGAGGAGCAGGTGCAGGAGGAGGAGGTGGTGGAGGTGGGGGAGCTG
CGCCTGTGAGGCGCCACATCTCGCATACGACAGCCGTGAAGTTTTTGTAC
GCCCGTAAATTTGATATACCACGAGCAGTCTCACTGTACGAACAGCATGA
ACAGATCCGCCTGAAGGAGTATCTATATAACATCGATCCGGATGTGGAGC
CCTTGCGCTCCGAGTTGCAGACCGGCAAGTTCACAATCCTGCCCGCACGC
ACTTCCAGTGGCGCTGCCATCGCCCTTTTCACCGCCAATCGACACAGTCC
GCTGAGCGTTTCGCACACAACCACGCTGCAGGGCATCGTCTATCAGCTGG
ACAGTGCGCTCCAGGATTCGGAGACGCAGCGTGCCGGGCTCGTTTTTATC
TACGACATGAGCGGCTCCAAGTATTCCAACTTCGACTACGACCTCTCCCA
GAAGATTCTCACACTGCTTAAGGGCGGCTATCCAGCGCGTCTGAAGAAGG
TCCTGATCGTGACGGCGCCACTGTGGTTCAAGGCACCCTTCAAGATCCTG
CGTCTGTTCGTGCGCGAGAAGCTGCGCGAGCGAGTGTTCACTGTATCGGT
GCCTCAATTGGCGCTGCACGTGCCGCGCAAGGCGCTGCCCATTCACTTGG
GTGGCACGCTGGAGGTCGATCACGCCACATGGTTGCTCAGCTGCCGCCAA
TCGATGACGAATCGTGAGGACGAGCTGCTGGCCAATATCGTGGGTGTGGG
CGGTGGATCCGGATCCGGTTCAGCAGCTGGATCAGCAGCAATTGTGTCCA
CCAATGGCACGGAAACCGAGGCCGCGACAACGGCAGCCACGATAATCAGC
GCCGTCCACCAGTTGGGCGATAATAATACCACCGTGGTGACGGTCAGCAA
TGGCGTCGGTCCAGCTGGATCGGCATCTGGCGGAGCAACGACAGCAGCGT
CGGCGGCGACGGAACCCAACGAAAATATCACAATCAACGGACTGAGTCCA
AGCCACCGTCAGGCGGCGAATAACAGCAGTAGCAGTAGCAGCAGTGCAGC
CACAGTGGCCAATCCCCTCAAGCTCAACACAAGTGGCTCCGCGGACAACA
ATAGTACCATCACGAACGCCACCACAGCTGCTGGAGCAGCCGGAGCAGCT
GCTGGCACCACCACCAATGGCGGCGGCGAGTTCTGGTCAGAGAATCCACC
CAGCAGCGCCTCATCCGGCTTCAGTGACGATGATAGTCTCGCCGGTCAAG
AGGGCGATCCCAAGCCCATTGATCAGATTGTTCAGATGGTTAAGCAGCGC
GGACGCCATGGTCTGATTAAGGAGTACGCGGACATTCGGAATAGGGCGCC
CGAGGGCACCTTTCTGCATGCGAGAATGCGGGCCAATCTGACCAAGAATC
GCTACACAGACGTCCTCTGCTACGATCACAGTCGAGTTGTTCTGGCACAC
GAAGACGGCGACGAGCCGTCGGATTATATTAATGCGAATTTCGTCGATGG
CTACAAACAAAAGAATGCCTATATTTCAACTCAAGGTCCATTACCAAAGA
CATCCCAGGACTTTTGGCGCATGATCTGGGAACAACATTGTTTAGTTATA
GTGATGACGACGCGCGTGATGGAGCGCGGACGCGTGAAATGCGGCCAGTA
CTGGGAGCCGACTGAAGAAAGTTCCTTAGAGTTTGGCGACTACCATGTGC
GAACAATTAGCGTTGAGTGCAACGAGGACTATATGGTTGCCTCGTTAGAA
TTGAGAAACATAAAGACTGACGAAATTCGCAATGTCTCACATTGGCAGTT
CACCAGCTGGCCGGACTATGGCGTTCCCAGCTCGGCCATGGCCATGCTGA
ACTTCCTGCAGAAGGTGCGTGAGAAGCAGGCGCAGCTTGTCCAAGGACTG
GGCGACACCTGGGCGGGTCATCCCCGTGGACCGCCCATTGTGGTGCACTG
CAGTGCAGGCATTGGACGCACAGGTACATTCATCACCCTGGACATTTGCA
TATCGCGCCTGGAGGACGTGGGCACGGCGGACATACGTGGAACGGTTGAG
AAGATCCGGTCGCAGCGAGCCTACTCCATTCAGATGCCCGATCAGTACGT
GTTCTGTCACCTGGCCCTCATCGAATACGCATATTCGCGTGGAATGCTAC
AGACGGTCGATCTGGCTGGCTTCGATGAGCGCGAACCGGACTCGGAGTAG
AAGCTTTCTAGACCAT
BS10819.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RA | 2484 | CG32697-PA | 1..2484 | 17..2500 | 12420 | 100 | Plus |
l(1)G0232-RB | 2409 | CG32697-PB | 38..2409 | 129..2500 | 11860 | 100 | Plus |
l(1)G0232-RG | 2373 | CG32697-PG | 3..2373 | 130..2500 | 11855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-RA | 3046 | CG32697-RA | 179..2662 | 17..2500 | 12420 | 100 | Plus |
l(1)G0232-RB | 2969 | CG32697-RB | 214..2585 | 129..2500 | 11860 | 100 | Plus |
l(1)G0232-RG | 5668 | CG32697-RG | 487..2857 | 130..2500 | 11855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9630194..9631097 | 1674..771 | 4520 | 100 | Minus |
X | 23542271 | X | 9643957..9644369 | 541..129 | 2065 | 100 | Minus |
X | 23542271 | X | 9643656..9643888 | 773..541 | 1165 | 100 | Minus |
X | 23542271 | X | 9629668..9629899 | 2065..1834 | 1160 | 100 | Minus |
X | 23542271 | X | 9629106..9629336 | 2500..2270 | 1155 | 100 | Minus |
X | 23542271 | X | 9629394..9629605 | 2275..2064 | 1060 | 100 | Minus |
X | 23542271 | X | 9629961..9630125 | 1837..1673 | 825 | 100 | Minus |
X | 23542271 | X | 9650484..9650598 | 131..17 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:55:33 has no hits.
BS10819.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:55:31 Download gff for
BS10819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RA | 160..2643 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:04 Download gff for
BS10819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RA | 179..2662 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:33 Download gff for
BS10819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0232-RA | 179..2662 | 17..2500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:17:33 Download gff for
BS10819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9629668..9629897 | 1836..2065 | 100 | <- | Minus |
X | 9629963..9630123 | 1675..1835 | 100 | <- | Minus |
X | 9629396..9629603 | 2066..2273 | 100 | <- | Minus |
X | 9629106..9629332 | 2274..2500 | 100 | <- | Minus |
X | 9630194..9631095 | 773..1674 | 100 | <- | Minus |
X | 9643657..9643887 | 542..772 | 100 | <- | Minus |
X | 9643957..9644367 | 131..541 | 100 | <- | Minus |
X | 9650485..9650598 | 17..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:04 Download gff for
BS10819.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9523701..9523930 | 1836..2065 | 100 | <- | Minus |
arm_X | 9523996..9524156 | 1675..1835 | 100 | <- | Minus |
arm_X | 9523139..9523365 | 2274..2500 | 100 | <- | Minus |
arm_X | 9523429..9523636 | 2066..2273 | 100 | <- | Minus |
arm_X | 9524227..9525128 | 773..1674 | 100 | <- | Minus |
arm_X | 9537690..9537920 | 542..772 | 100 | <- | Minus |
arm_X | 9537990..9538400 | 131..541 | 100 | <- | Minus |
arm_X | 9544518..9544631 | 17..130 | 100 | | Minus |
BS10819.pep Sequence
Translation from 16 to 2499
> BS10819.pep
MQQTQWNKDRQEDRNNNSGSRSEQDSGCHRRLFLCIAKAVKQFIDLCNNL
GANCSTTTATSPSTSSSSASSTQNLIAVVPPQLQQLQVQLPAPGGGGGAG
AGGGGGGGGGAAPVRRHISHTTAVKFLYARKFDIPRAVSLYEQHEQIRLK
EYLYNIDPDVEPLRSELQTGKFTILPARTSSGAAIALFTANRHSPLSVSH
TTTLQGIVYQLDSALQDSETQRAGLVFIYDMSGSKYSNFDYDLSQKILTL
LKGGYPARLKKVLIVTAPLWFKAPFKILRLFVREKLRERVFTVSVPQLAL
HVPRKALPIHLGGTLEVDHATWLLSCRQSMTNREDELLANIVGVGGGSGS
GSAAGSAAIVSTNGTETEAATTAATIISAVHQLGDNNTTVVTVSNGVGPA
GSASGGATTAASAATEPNENITINGLSPSHRQAANNSSSSSSSAATVANP
LKLNTSGSADNNSTITNATTAAGAAGAAAGTTTNGGGEFWSENPPSSASS
GFSDDDSLAGQEGDPKPIDQIVQMVKQRGRHGLIKEYADIRNRAPEGTFL
HARMRANLTKNRYTDVLCYDHSRVVLAHEDGDEPSDYINANFVDGYKQKN
AYISTQGPLPKTSQDFWRMIWEQHCLVIVMTTRVMERGRVKCGQYWEPTE
ESSLEFGDYHVRTISVECNEDYMVASLELRNIKTDEIRNVSHWQFTSWPD
YGVPSSAMAMLNFLQKVREKQAQLVQGLGDTWAGHPRGPPIVVHCSAGIG
RTGTFITLDICISRLEDVGTADIRGTVEKIRSQRAYSIQMPDQYVFCHLA
LIEYAYSRGMLQTVDLAGFDEREPDSE*
BS10819.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0232-PA | 827 | CG32697-PA | 1..827 | 1..827 | 4289 | 100 | Plus |
l(1)G0232-PB | 802 | CG32697-PB | 13..802 | 38..827 | 4081 | 99.9 | Plus |
l(1)G0232-PG | 790 | CG32697-PG | 2..790 | 39..827 | 4080 | 100 | Plus |
l(1)G0232-PC | 797 | CG32697-PC | 9..797 | 39..827 | 4080 | 100 | Plus |
l(1)G0232-PF | 597 | CG32697-PF | 1..597 | 231..827 | 3103 | 100 | Plus |