Clone Sequence Records
BS10820.complete Sequence
2279 bp assembled on 2009-12-07
GenBank Submission: KX802710
> BS10820.complete
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CATTAACACCGAGAATGTACAAGCCCAGAGCCAAGGTGGCGCCCAAGGCG
TCCAAGGCGATGACGAGGACATTGATGAGGGTAGTGCCGTTGGCGGACCA
AACTCGGCCACCGGACCCAATCCCGCCTCCGCCTCTGCATCCGCCGTCCA
TGCCGGAGTTGTGGTAAAGCAGCTGGCCAGCGTTGTGGACAAATCGTCGT
CGAATCACAAACATAAGATCAAAGACAACAGCGTGTCATCAGTGGGCTCC
GAAATGGTTATTGAACCCAAAGCCGAATACGATGACGATGCGCACGATGA
GAATGTTGAGGATTTGACACTGGACGAGGAGGACATGACAATGGAGGAGC
TGGACCAGACGGCCGGCACCAGCCAGGGTGGCGAAGGATCTAGTCAAACA
TATGCAACATGGCAGCACGACAGATCTCAGGATGAACTTGGACTAATGGC
ACAGGATGCACAGCAACGGGATCCCCAAGACCTGAAGTACGACTACAAGC
ACAGCATTTTTGGCAGCGATGATGCGGATCAGGATCAATACAAGGAGCGT
TTCCACTGCGCCGTCTGCAACAAGAGTTATCTCCGCAAGCGCCATCTGCA
GCGCCATATGCGCGATGAATGCATTGGCATTCCGCCACGATTCAATTGCG
AGTTTTGCAGCTCTCGATTCCGTCGCAAGTACCACATGGTGCGCCATTTG
GTCTCCAAGCACGGTATTCCGCCGGCAATTGCACAGATGACAACGGGCAG
TGGTTCGCGTTCCTCTATCAGCGGCTCGCTAGACCTAAAGTCTGGCGGCG
GATTAGCTGGTCTTCAGCAGATGGGTGGTGGCGGCGCCGGAGGCGGCGGC
TCTACCGGTGATTGTGGGGCAAGTGTGGGCAGTGCTGGATCCCATAATGG
CTGCGAGAGTCCCATACCAGAGAACCTGTCGCTGCGCAAGGAGAACTACG
AAAACGAGAATCTTTCGGGCTCGCGGTGCACTTCGCCACTGCCACCGCAC
ATTATGCCGATACCCACGTATGGGTTGACAGGTGCCATCACTGCGATCTC
TGCCGCAGCAGCCGTGGTCGAGGAGCAAGCAGCGGCAGCAGCAGCAGCTG
CGGCCATCGCTGAGGCTCAAGCCAAGAACAACAATGAATCCGGAGGAGGA
AGATCCGAAGTCGATGACGAAGACGAGACATTGGCCGCACAAGCCGAGGC
TGTCGCAGCTCTCGGCATCAAGCCGGAACCGGTGACGCCCAGCAAGGTGC
AGCACCTGATGAACGAGGAGTGGAACATGAAGCTGGGCCTACAGATCATA
TCGAATTCATTGCTCAAGGAGCGATTGATGAACACTATGCCATTTGCTTA
TAACAACAACTAAAAGCTTTCTAGACCAT
BS10820.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RE | 2247 | CG12052-PE | 1..2247 | 17..2263 | 11235 | 100 | Plus |
| lola-RD | 2247 | CG12052-PD | 1..2247 | 17..2263 | 11235 | 100 | Plus |
| lola-RB | 2364 | CG12052-PB | 1..1369 | 17..1385 | 6830 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:01:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RE | 3417 | CG12052-RE | 397..2644 | 17..2264 | 11240 | 100 | Plus |
| lola-RD | 3423 | CG12052-RD | 403..2650 | 17..2264 | 11240 | 100 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1765 | 17..1385 | 6830 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10520393..10521279 | 2264..1378 | 4435 | 100 | Minus |
| 2R | 25286936 | 2R | 10532181..10532895 | 1298..584 | 3575 | 100 | Minus |
| 2R | 25286936 | 2R | 10533118..10533511 | 584..191 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 190..17 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10532039..10532119 | 1379..1299 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:01:56 has no hits.
BS10820.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:42 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RE | 400..2644 | 17..2261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:05 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RD | 403..2647 | 17..2261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:24:14 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RE | 400..2644 | 17..2261 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:22 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RD | 403..2647 | 17..2261 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:22 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10520396..10521277 | 1380..2261 | 100 | <- | Minus |
| 2R | 10532039..10532119 | 1299..1379 | 100 | <- | Minus |
| 2R | 10532181..10532894 | 585..1298 | 100 | <- | Minus |
| 2R | 10533118..10533511 | 191..584 | 100 | <- | Minus |
| 2R | 10533576..10533749 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:05 Download gff for
BS10820.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6407901..6408782 | 1380..2261 | 100 | <- | Minus |
| arm_2R | 6419544..6419624 | 1299..1379 | 100 | <- | Minus |
| arm_2R | 6419686..6420399 | 585..1298 | 100 | <- | Minus |
| arm_2R | 6420623..6421016 | 191..584 | 100 | <- | Minus |
| arm_2R | 6421081..6421254 | 17..190 | 100 | | Minus |
BS10820.5prime Sequence
903 bp (899 high quality bases) assembled on 2006-04-19
> BS10820.5prime
GAAGTTATCAGTCGACATGGATGACGATCAGCAGTTTTGTTTGCGGTGGA
ACAACCACCAGAGCACACTGATCAGCGTGTTCGACACGTTGCTGGAGAAC
GAGACTCTAGTCGATTGCACGCTAGCCGCCGAGGGCAAATTTCTCAAGGC
CCACAAGGTGGTGCTGTCAGCATGCAGTCCCTACTTTGCTACCTTACTAC
AAGAACAGTACGACAAACATCCCATCTTTATACTCAAGGATGTCAAGTAC
CAAGAGCTGCGCGCCATGATGGACTACATGTACCGCGGCGAGGTCAATAT
CTCGCAGGATCAGCTGGCCGCTCTGCTCAAGGCCGCCGAATCGCTTCAGA
TCAAGGGCCTTTCGGACAATCGCACTGGCGGCGGAGTAGCTCCCAAGCCA
GAGTCCTCCGGCCATCATCGCGGCGGTAAGCTGAGCGGTGCCTACACACT
GGAGCAAACTAAGCGGGCTCGACTGGCCACCGGCGGAGCGATGGATACGT
CTGGCGATGTGTCCGGTTCGCGCGAGGGCTCCTCGAGTCCGTCGCGTCGT
CGCCGAAAAGTCCGACGTCGCAGCATGGAGAATGATGCCCACGACAACTC
AAACTCGTCCGTGTTACAAGCCGCCGCCTCGAATCAGTCAATCCTCCAGC
AGACAGGGGCCGGTTTGGCCGTCTCCGCTTTGGTCACCACCCAGTTGTCC
AGCGGACCGGCAGCCGGAACCAGCAGCCAAGCGTCGTCGACCCAACAACA
GCAGCCATTGACCAGCACCAACGTTACCAAAAAGACTGAAAGCGCTAAAC
TAACATCCTCGACAGCCGCCCCAGCGAGCGGAGCATCTGCGTCAGCGGCT
GTACAACAGGCCCATCTGCATCAGCAGCAGGCGCAGACCACAAGCGATGC
CAT
BS10820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12052-PX | 1809 | lola-RX | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PG | 2676 | lola-RG | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PI | 2913 | lola-RI | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PF | 1698 | lola-RF | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PO | 2007 | lola-RO | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PJ | 2274 | lola-RJ | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PL | 1827 | lola-RL | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PR | 2676 | lola-RR | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PY | 1734 | lola-RY | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PP | 2892 | lola-RP | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PN | 2637 | lola-RN | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PK | 1641 | lola-RK | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PQ | 1812 | lola-RQ | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PS | 2163 | lola-RS | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PT | 1728 | lola-RT | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PA | 2121 | lola-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PM | 1398 | lola-RM | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PH | 1557 | lola-RH | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PD | 2247 | lola-RD | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PC | 2364 | lola-RC | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PE | 2247 | lola-RE | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PW | 2316 | lola-RW | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PU | 1728 | lola-RU | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PV | 1650 | lola-RV | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PB | 2364 | lola-RB | 1..887 | 17..903 | 4435 | 100 | Plus |
| CG12052-PZ | 1998 | lola-RZ | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:51:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RAA | 4623 | CG12052-RA | 607..1493 | 17..903 | 4435 | 100 | Plus |
| lola-RZ | 2707 | CG12052-RZ | 403..1289 | 17..903 | 4435 | 100 | Plus |
| lola-RB | 2974 | CG12052-RB | 397..1283 | 17..903 | 4435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10533118..10533511 | 584..191 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 10532576..10532895 | 903..584 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 10533576..10533749 | 190..17 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:51:18 has no hits.
BS10820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:50 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12052-PS | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:40 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12052-PZ | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:23:20 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1283 | 9..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:47 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RB | 393..1283 | 9..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:47 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10532576..10532894 | 585..903 | 100 | <- | Minus |
| 2R | 10533118..10533511 | 191..584 | 100 | <- | Minus |
| 2R | 10533576..10533753 | 9..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:23:20 Download gff for
BS10820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6420081..6420399 | 585..903 | 100 | <- | Minus |
| arm_2R | 6420623..6421016 | 191..584 | 100 | <- | Minus |
| arm_2R | 6421081..6421258 | 9..190 | 97 | | Minus |
BS10820.3prime Sequence
970 bp (822 high quality bases) assembled on 2006-04-19
> BS10820.3prime
ATGGTCTAGAAAGCTTTTAGTTGTTGTTATAAGCAAATGGCATAGTGTTC
ATCAATCGCTCCTTGAGCAATGAATTCGATATGATCTGTAGGCCCAGCTT
CATGTTCCACTCCTCGTTCATCAGGTGCTGCACCTTGCTGGGCGTCACCG
GTTCCGGCTTGATGCCGAGAGCTGCGACAGCCTCGGCTTGTGCGGCCAAT
GTCTCGTCTTCGTCATCGACTTCGGATCTTCCTCCTCCGGATTCATTGTT
GTTCTTGGCTTGAGCCTCAGCGATGGCCGCAGCTGCTGCTGCTGCCGCTG
CTTGCTCCTCGACCACGGCTGCTGCGGCAGAGATCGCAGTGATGGCACCT
GTCAACCCATACGTGGGTATCGGCATAATGTGCGGTGGCAGTGGCGAAGT
GCACCGCGAGCCCGAAAGATTCTCGTTTTCGTAGTTCTCCTTGCGCAGCG
ACAGGTTCTCTGGTATGGGACTCTCGCAGCCATTATGGGATCCAGCACTG
CCCACACTTGCCCCACAATCACCGGTAGAGCCGCCGCCTCCGGCGCCGCC
ACCACCCATCTGCTGAAGACCAGCTAATCCGCCGCCAGACTTTAGGTCTA
GCGAGCCGCTGATAGAGGAACGCGAACCACTGCCCGTTGTCATCTGTGCA
ATTGCCGGCGGAATACCGTGCTTGGAGACCAAATGGCGCACCATGTGGTA
CTTGCGACGGAATCGAGAGCTGCAAAACTCGCAATTGAATCGTGGCGGAA
TGCCAATGCATTCATCGCGCATATGGCGCTGCAGATGGCGCTTGCGGAGA
TAACTCTTGTTGCAGACGGCGCAGTGGAAACGCTCCTTGTATTGATCCTG
ATCCGCATCATCGCTGCCAAAAATGCTGTGCTTGTAGTCGTACTTCAGGT
CTTGGGGATCCCGTTGCTGTGCATCCTGTGCCATTAGTCCAAGTTCATCC
TGAGATCTGTCGTGCTGCCA
BS10820.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12052-PD | 2247 | lola-RD | 1294..2247 | 970..17 | 4770 | 100 | Minus |
| CG12052-PE | 2247 | lola-RE | 1294..2247 | 970..17 | 4770 | 100 | Minus |
| CG12052-PQ | 1812 | lola-RQ | 1294..1365 | 970..899 | 360 | 100 | Minus |
| CG12052-PO | 2007 | lola-RO | 1294..1365 | 970..899 | 360 | 100 | Minus |
| CG12052-PJ | 2274 | lola-RJ | 1294..1365 | 970..899 | 360 | 100 | Minus |
| CG12052-PH | 1557 | lola-RH | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PK | 1641 | lola-RK | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PV | 1650 | lola-RV | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PT | 1728 | lola-RT | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PU | 1728 | lola-RU | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PY | 1734 | lola-RY | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PZ | 1998 | lola-RZ | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PW | 2316 | lola-RW | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PC | 2364 | lola-RC | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PB | 2364 | lola-RB | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PN | 2637 | lola-RN | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PG | 2676 | lola-RG | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PR | 2676 | lola-RR | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PP | 2892 | lola-RP | 1294..1364 | 970..900 | 355 | 100 | Minus |
| CG12052-PM | 1398 | lola-RM | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PF | 1698 | lola-RF | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PX | 1809 | lola-RX | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PL | 1827 | lola-RL | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PA | 2121 | lola-RA | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PS | 2163 | lola-RS | 1294..1363 | 970..901 | 350 | 100 | Minus |
| CG12052-PI | 2913 | lola-RI | 1294..1363 | 970..901 | 350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-RE | 3417 | CG12052-RE | 1690..2644 | 970..16 | 4775 | 100 | Minus |
| lola-RD | 3423 | CG12052-RD | 1696..2650 | 970..16 | 4775 | 100 | Minus |
| lola-RB | 2974 | CG12052-RB | 1690..1765 | 970..895 | 365 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:42:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10520393..10521279 | 16..902 | 4435 | 100 | Plus |
| 2R | 25286936 | 2R | 10532039..10532108 | 901..970 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:42:41 has no hits.
BS10820.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:48 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12052-PD | 1295..2247 | 17..969 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:39 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12052-PD | 1295..2247 | 17..969 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:42:01 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RD | 1697..2665 | 1..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:48:11 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lola-RD | 1697..2665 | 1..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:48:11 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10520378..10521277 | 1..900 | 99 | <- | Plus |
| 2R | 10532039..10532107 | 901..969 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:42:01 Download gff for
BS10820.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6407883..6408782 | 1..900 | 99 | <- | Plus |
| arm_2R | 6419544..6419612 | 901..969 | 100 | | Plus |
BS10820.pep Sequence
Translation from 16 to 2262
> BS10820.pep
MDDDQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVL
SACSPYFATLLQEQYDKHPIFILKDVKYQELRAMMDYMYRGEVNISQDQL
AALLKAAESLQIKGLSDNRTGGGVAPKPESSGHHRGGKLSGAYTLEQTKR
ARLATGGAMDTSGDVSGSREGSSSPSRRRRKVRRRSMENDAHDNSNSSVL
QAAASNQSILQQTGAGLAVSALVTTQLSSGPAAGTSSQASSTQQQQPLTS
TNVTKKTESAKLTSSTAAPASGASASAAVQQAHLHQQQAQTTSDAINTEN
VQAQSQGGAQGVQGDDEDIDEGSAVGGPNSATGPNPASASASAVHAGVVV
KQLASVVDKSSSNHKHKIKDNSVSSVGSEMVIEPKAEYDDDAHDENVEDL
TLDEEDMTMEELDQTAGTSQGGEGSSQTYATWQHDRSQDELGLMAQDAQQ
RDPQDLKYDYKHSIFGSDDADQDQYKERFHCAVCNKSYLRKRHLQRHMRD
ECIGIPPRFNCEFCSSRFRRKYHMVRHLVSKHGIPPAIAQMTTGSGSRSS
ISGSLDLKSGGGLAGLQQMGGGGAGGGGSTGDCGASVGSAGSHNGCESPI
PENLSLRKENYENENLSGSRCTSPLPPHIMPIPTYGLTGAITAISAAAAV
VEEQAAAAAAAAAIAEAQAKNNNESGGGRSEVDDEDETLAAQAEAVAALG
IKPEPVTPSKVQHLMNEEWNMKLGLQIISNSLLKERLMNTMPFAYNNN*
BS10820.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lola-PE | 748 | CG12052-PE | 1..748 | 1..748 | 3829 | 100 | Plus |
| lola-PD | 748 | CG12052-PD | 1..748 | 1..748 | 3829 | 100 | Plus |
| lola-PU | 575 | CG12052-PU | 1..560 | 1..566 | 2367 | 85.7 | Plus |
| lola-PT | 575 | CG12052-PT | 1..560 | 1..566 | 2367 | 85.7 | Plus |
| lola-PY | 577 | CG12052-PY | 1..511 | 1..527 | 2349 | 90.1 | Plus |
