Clone Sequence Records
BS10821.complete Sequence
2516 bp assembled on 2009-12-07
GenBank Submission: KX801843
> BS10821.complete
GAAGTTATCAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCT
TTCCATCACTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATT
CTCAAGTCCAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGG
CCTGGGCTTCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTC
CCACCCCCATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGAT
GTGGTGGCAATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGAT
TCCGCTCTTTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTG
CCCTGATCCTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTC
ATAAAGGAGCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGG
TGGCGACTCCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACG
TAATTGTTGCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGAC
TTGAAGCTAAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACT
CTTCGAGATGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGC
CATCGTCCCGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTA
GTAGAGTTCGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGA
CGTCGAATCCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTC
GACCAGACGACCGCTACACAGCACTTGTGGTTCTTCTTAAGTACGTTATT
CCGGTGCAGTCGCAAACCGTGGTGTTCGCCGGTACTCAGCACCATGTCGA
ACTCATTTCGTACATACTTACTGAGGCTGGAATCTCCAACGCCTCAGTCT
ACTCCAGCCTGGATCCAGCTGCACGCAAAATAAACACCGCCAAATTTGTG
AACAAAAAGGTGTCCGTGCTAATAGTCACGGACGTGGCCGCGCGTGGTAT
TGACATTCCCAGTCTAGACTTTGTGGTGAACCTGCACTTCCCGGGTAAAC
CGAAACTGTTTGTCCACCGGGTAGGTCGTTGCGCTCGCGCTGGTCGCACA
GGAACCGCATACTCTATTGTATCCACAGACGACACAGCACATCTACTGGA
TCTGCACTTGTTCTTGAACAGACCCTTTAATATACACGACAGCTCGGCAT
TGGGAACCATTCCGCAAGATTTGCTCGAGGAAGAGCACCTCACAGTGACC
GATATAAAGAAAAGTCACCATATTGCCGGAGTATTGCGCACCAGCGAAAA
CGCCTACAAAAAATACTTGAGTTCCCGACCAGTAGCCTCCACGGATGCCA
ACGCGCGTGTAAAGAAAATTAAATTCTTTGCTCTCAAGCCATTGGAGGAT
TTCTTCACAGCTGCCCCTGTGCTCGCCCAGGCGGCTGAAGCTAGTGGACA
ATCAACAGAGTCGCAGGCAAAGGTGAGCGCCGCAGAGCGCAAGTTGCAGG
AGGAAAAGCACGATATACTGGTGAAGATGCGTAGTTTCCGTCCTGGTGGT
ACCGTTTTTGAACTCAACACCACTCAAAAGTCCACGCAGTTTATCGTTAT
GAAGGAAAAACGAATGCAGCATGCGGAAGTAATCAACAAGTTTAGGCAGC
AGCGCGCAGAAGAGGACATAGACGAGGAAAAGAAAACGATCGAGGCGCTC
AACCCAAGCTCAGGCAGAATGCCCACCGCCGACGAGGAAGCTATTAGTAG
TACTTTCAATAAAGTCGTTGCGCCCAAGAGGCTCCAGAACATGGACGCCC
TTTACAAGGACAAGCCAAAGAAGAAAAAGCGGAAGATAAACAGCAAGGAC
GAGGATCACTATGTGCCGTACCAGTCGGCAGACAAGCACACAGAGGATGG
TCTGGCCATTAACAACTTTGAGCGGCAGGCGCAGAACGCCGAGTTTTCGG
TGTCGGACCGCGACTTATCCCAGGAAGTGAAGCACAAGCCCGGCCTTAAG
AAGTGGGACCGAATTAAGAAAAAAATGGTCTCTGTACAAGATCCGCGAGC
CAACAAAATTCGGACCGAGTCCGGTGCGTGGATTCCTGCCTCCTTTAAAA
CAGGTCGTTATGCTGAGTGGAAGGAGAAGTCTAAGATCGAGGACCAGCTG
CAGCGCGAAAATGCAGGTAGTGATGACGAAAACGCCAAGCCGTTGAGCCA
TGCCCAGCGCTACCCAGTCAGTCGTCATGCGCGGCACAACTTAAAGCTAG
AACTTAAGAAGCGACTGACCGGAAACGACAAGGAGATGCGCCGCCCCGAG
CAAATTGTCAAGTCTCGCATGCGACTGGAGTTCATTAAAAAGCGCAACGA
AGAGAACGCAGAGAGGAAAAGCGAAAACCGCAAGCGCAGCATGCGGAAAA
CGCAGCGCCCCAAAGCTCAATCAACTGGGGGCTCGAAAAGAAGGAAGTAG
AAGCTTTCTAGACCAT
BS10821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2484 | CG32344-PA | 1..2484 | 17..2500 | 12420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..2556 | 17..2507 | 12425 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 321922..322828 | 2507..1601 | 4505 | 99.8 | Minus |
| 3L | 28110227 | 3L | 323239..323997 | 1325..567 | 3795 | 100 | Minus |
| 3L | 28110227 | 3L | 324049..324599 | 569..19 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 322893..323168 | 1600..1325 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:25:02 has no hits.
BS10821.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:45 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..2546 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:13:44 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..2549 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:59:48 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 63..2546 | 17..2500 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:55 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..2549 | 17..2500 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:55 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 321929..322828 | 1601..2500 | 100 | <- | Minus |
| 3L | 322893..323168 | 1325..1600 | 100 | <- | Minus |
| 3L | 323240..323994 | 570..1324 | 100 | <- | Minus |
| 3L | 324049..324600 | 17..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:13:44 Download gff for
BS10821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 321929..322828 | 1601..2500 | 100 | <- | Minus |
| arm_3L | 322893..323168 | 1325..1600 | 100 | <- | Minus |
| arm_3L | 323240..323994 | 570..1324 | 100 | <- | Minus |
| arm_3L | 324049..324600 | 17..569 | 99 | | Minus |
BS10821.3prime Sequence
955 bp (893 high quality bases) assembled on 2006-04-19
> BS10821.3prime
ATGGTCTAGAAAGCTTCTACTTCCTTCTTTTCGAGCCCCCAGTTGATTGA
GCTTTGGGGCGCTGCGTTTTCCGCATGCTGCGCTTGCGGTTTTCGCTTTT
CCTCTCTGCGTTCTCTTCGTTGCGCTTTTTAATGAACTCCAGTCGCATGC
GAGACTTGACAATTTGCTCGGGGCGGCGCATCTCCTTGTCGTTTCCGGTC
AGTCGCTTCTTAAGTTCTAGCTTTAAGTTGTGCCGCGCATGACGACTGAC
TGGGTAGCGCTGGGCATGGCTCAACGGCTTGGCGTTTTCGTCATCACTAC
CTGCATTTTCGCGCTGCAGCTGGTCCTCGATCTTAGACTTCTCCTTCCAC
TCAGCATAACGACCTGTTTTAAAGGAGGCAGGAATCCACGCACCGGACTC
GGTCCGAATTTTGTTGGCTCGCGGATCTTGTACAGAGACCATTTTTTTCT
TAATTCGGTCCCACTTCTTAAGGCCGGGCTTGTGCTTCACTTCCTGGGAT
AAGTCGCGGTCCGACACCGAAAACTCGGCGTTCTGCGCCTGCCGCTCAAA
GTTGTTAATGGCCAGACCATCCTCTGTGTGCTTGTCTGCCGACTGGTACG
GCACATAGTGATCCTCGTCCTTGCTGTTTATCTTCCGCTTTTTCTTCTTT
GGCTTGTCCTTGTAAAGGGCGTCCATGTTCTGGAGCCTCTTGGGCGCAAC
GACTTTATTGAAAGTACTACTAATAGCTTCCTCGTCGGCGGTGGGCATTC
TGCCTGAGCTTGGGTTGAGCGCCTCGATCGTTTTCTTTTCCTCGTCTATG
TCCTCTTCTGCGCGCTGCTGCCTAAACTTGTTGATTACTTCCGCATGCTG
CATTCGTTTTTCCTTCATAACGATAAACTGCGTGGACTTTTGAGTGGTGT
TGAGTTCAAAAACGGTACCACCAGGACGGGAACTACGCATCTTTCCCAGT
ATATC
BS10821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 2484 | CG32344-RA | 1546..2484 | 955..17 | 4620 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:33:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 1611..2556 | 955..10 | 4655 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:33:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 321922..322828 | 10..916 | 4505 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:33:55 has no hits.
BS10821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:51 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1546..2484 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:42 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1546..2484 | 17..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:28:22 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 1611..2558 | 7..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:12 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 1611..2558 | 7..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:12 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 321920..322828 | 7..916 | 99 | <- | Plus |
| 3L | 322893..322931 | 917..955 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:28:22 Download gff for
BS10821.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 321920..322828 | 7..916 | 99 | <- | Plus |
| arm_3L | 322893..322931 | 917..955 | 92 | | Plus |
BS10821.5prime Sequence
930 bp (897 high quality bases) assembled on 2006-04-19
> BS10821.5prime
GAAGTTATCAGTCGACATGCGTAAGAAGCAGGCGGATGAAATACCAGGCT
TTCCATCACTGGACAACGATGCCGGCACCAGCGACCGGGGCGCCGACATT
CTCAAGTCCAAGTCCAAGAAGAACAAGAGTGGTGGATTCCAGTCGATGGG
CCTGGGCTTCGAGCTGATAAAGGGCATCACCAAGCGGGGTTACAAGGTTC
CCACCCCCATACAGCGGAAAACGATTCCGCTGATCCTGGAGGGACGCGAT
GTGGTGGCAATGGCCAAGACGGGCTCTGGCAAGACGGCCTGCTTTCTGAT
TCCGCTCTTTGAAAAGCTACAGAGGCGCGAGCCCACAAAGGGGGCCCGTG
CCCTGATCCTGTCTCCGACGCGCGAACTGGCTGTGCAGACGTATAAGTTC
ATAAAGGAGCTGGGCCGCTTTATGGAACTGAAGAGCATTCTGGTGCTAGG
TGGCGACTCCATGGACTCACAGTTCTCGGCCATACATACCTGTCCGGACG
TAATTGTTGCAACGCCAGGTCGTTTTCTTCATTTGTGCGTAGAAATGGAC
TTGAAGCTAAATTCCATAGAGTACGTGGTGTTTGATGAAGCCGATCGACT
CTTCGAGATGGGCTTCGGCGAGCAACTGAACGAAACGTTGCACAGATTGC
CATCGTCCCGGCAGACGGTCATGTTTTCAGCCACGCTGCCAAAACTGCTA
GTAGAGTTCGCCCGTGCCGGACTGAACGACCCAGTGCTCATTCGTTTAGA
CGTCGAATCCAAGCTCCCGGATGCGCTGGCTCTAAAGTTTCTGTACTGTC
GACCAGACGACCGCTACACAGCACTTGTGGTTCTTCTTAAGTACGTTATT
CCGGTGCAGTCGCAAACCGTGGTGTTCGCCGGTACTCAGCACCATGTCGA
ACTCATTTCGTACATACTTACTGAAGCTGG
BS10821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 2484 | CG32344-RA | 1..914 | 17..930 | 4545 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-RA | 2694 | CG32344-RA | 66..979 | 17..930 | 4555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 324049..324599 | 569..19 | 2755 | 100 | Minus |
| 3L | 28110227 | 3L | 323634..323997 | 930..567 | 1805 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:01:05 has no hits.
BS10821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:52 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:43 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-PA | 1..914 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:05:14 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..979 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:46 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32344-RA | 66..979 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:46 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 323634..323994 | 570..930 | 99 | <- | Minus |
| 3L | 324049..324607 | 9..569 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:05:14 Download gff for
BS10821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 323634..323994 | 570..930 | 99 | <- | Minus |
| arm_3L | 324049..324607 | 9..569 | 99 | | Minus |
BS10821.pep Sequence
Translation from 16 to 2499
> BS10821.pep
MRKKQADEIPGFPSLDNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFEL
IKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK
LQRREPTKGARALILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMD
SQFSAIHTCPDVIVATPGRFLHLCVEMDLKLNSIEYVVFDEADRLFEMGF
GEQLNETLHRLPSSRQTVMFSATLPKLLVEFARAGLNDPVLIRLDVESKL
PDALALKFLYCRPDDRYTALVVLLKYVIPVQSQTVVFAGTQHHVELISYI
LTEAGISNASVYSSLDPAARKINTAKFVNKKVSVLIVTDVAARGIDIPSL
DFVVNLHFPGKPKLFVHRVGRCARAGRTGTAYSIVSTDDTAHLLDLHLFL
NRPFNIHDSSALGTIPQDLLEEEHLTVTDIKKSHHIAGVLRTSENAYKKY
LSSRPVASTDANARVKKIKFFALKPLEDFFTAAPVLAQAAEASGQSTESQ
AKVSAAERKLQEEKHDILVKMRSFRPGGTVFELNTTQKSTQFIVMKEKRM
QHAEVINKFRQQRAEEDIDEEKKTIEALNPSSGRMPTADEEAISSTFNKV
VAPKRLQNMDALYKDKPKKKKRKINSKDEDHYVPYQSADKHTEDGLAINN
FERQAQNAEFSVSDRDLSQEVKHKPGLKKWDRIKKKMVSVQDPRANKIRT
ESGAWIPASFKTGRYAEWKEKSKIEDQLQRENAGSDDENAKPLSHAQRYP
VSRHARHNLKLELKKRLTGNDKEMRRPEQIVKSRMRLEFIKKRNEENAER
KSENRKRSMRKTQRPKAQSTGGSKRRK*
BS10821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32344-PA | 827 | CG32344-PA | 1..827 | 1..827 | 4201 | 100 | Plus |
| CG9253-PA | 507 | CG9253-PA | 25..408 | 3..389 | 537 | 34.5 | Plus |
| Rs1-PB | 782 | CG2173-PB | 128..518 | 2..396 | 531 | 32.9 | Plus |
| Rs1-PA | 782 | CG2173-PA | 128..518 | 2..396 | 531 | 32.9 | Plus |
| CG6418-PB | 791 | CG6418-PB | 271..646 | 41..421 | 522 | 33.4 | Plus |
