Clone Sequence Records
BS10824.complete Sequence
1922 bp assembled on 2009-12-07
GenBank Submission: KX802985
> BS10824.complete
GAAGTTATCAGTCGACATGGTCGCTGGTCAGTGTGTCGCTGGTCACTGTG
TGGAGCACAGATGGTGGCCACTTCGGCCCTCTTCGCTGCCGATAGAAGGG
ATAGAAGGCCCATGCAAAGCTCCAGAGAATAACACAGTGTGCATTACTTT
CTCCCCCAGCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACTC
CCCGGTACACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCAG
TACAAGGATGTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCAA
GAAGGACGAGGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTCT
ACCACCAGCGCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAAG
CTGCTGCTCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGTT
CATGGACCTGCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTACA
TTGCCGAGCAGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGGT
AAGCAAGGCGGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACGA
CTACGACGACTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGACG
TGATCCTTATCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAAT
GGCATGGACTGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACAA
GGCGCCGGAGGTGTGCCTCGAGGAGGAGGACGACGTGCTCTTTCCAACGG
ACGTGCGCCAGCTGCAGCAGGTGGGATCGTCCGGAGCCGCCGGCGGTGGT
GTCTCCGGAGGCTCCCTTCCCGGAAACATGTCTAGCAACGGGATTACCGA
AACCAGTCGCCGCGCCGCAAGCTCGCCCGTGTGCTCCACGAAGACCTCGA
TTAGTTCCAGCGGGAGCTACGCATCAGCGCCCAAACCGGACATCACTATC
CAGACCGTGGGCCACATACGCGTGGGCAGCTTTGCCAACATCAACAAGAC
GCTGCAGAACGGCGGCTCCGGCACAGGAGCTGTCCTATCAGCGGCCAGCA
ATGGCGGCTCCAGTGCCAGTGGAGTGCTGCCGCTCACAGCGGAGCAAGTG
CAGCAGCACACGCTGCTGAACGGCCTAGGATTGTCCGCCGTGAATCCGGC
TCAGTCTCTGCAGGCGGCCATCAATGCCGCCTATGGGTCCGCCGCTCCAT
CTTCATCGGTCGCCATTAGCAGCCGCCGCACCCCTCCCACTCTGCAGTTG
CCACGCCTTCAGCGCGGAAACATCAACAATAGCCACCACACTGCCGGCAG
CACAAGCAATTCCGCGGTGGCCTCCAATGGAGTGCAACTGTTGCTCAACG
GCGGCCACCACGCACAGATGACGCACAACCATTTGGCGCGGGACAAGACA
GGAGGCGTGGCCATCGGGGCGGCGGGCAGTTTCAACGGGTACAACGGACT
GGCAGTGGCGGGCACAGTGTGCAGCGCCTTGAACAGCAGCGGATCCGGAG
CCGGAAGCGGCGGGAGCAGTGCCAACAACAGCGGCGTGGGCCTGGGGATC
GGCGGGGCACACACGTCGGGCAGCGGAGGAAGTGGCAGCGGTGGGACGAG
GAGCCAGCACCAGGAGCTGATGAATTCGCTGAGGATCGAGGAGAGCAAGC
GGAAAATCGACCTGATCAACGCCCAAATCGAATACTGGCAGACGCTCACC
CGCAAGCTGAACAGTCAGGCGAATCACATGCCCAATCCTGCGTGCCCGTG
CCACTTCCCTGGAGCCAGTGTGCTCTCGCCCGTCGCCGTGACCGCCGCTA
GTGCCTCATCGTCCGCTTCCGCCAATGTGTTGCAGACGCAGGCCAGCACC
AGCTAGAAGCTTTCTAGACCAT
BS10824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 1719 | CG32813-PK | 1..1719 | 188..1906 | 8595 | 100 | Plus |
| CG32813-RJ | 1719 | CG32813-PJ | 1..1719 | 188..1906 | 8595 | 100 | Plus |
| CG32813-RI | 1719 | CG32813-PI | 1..1719 | 188..1906 | 8595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 891..2780 | 17..1906 | 9450 | 100 | Plus |
| CG32813-RN | 3585 | CG32813-RN | 557..2307 | 156..1906 | 8755 | 100 | Plus |
| CG32813-RL | 3484 | CG32813-RL | 456..2206 | 156..1906 | 8755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1390274..1391565 | 615..1906 | 6460 | 100 | Plus |
| X | 23542271 | X | 1389458..1390057 | 17..616 | 3000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:25:47 has no hits.
BS10824.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:49:56 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RA | 800..2689 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:03 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 891..2780 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:13:15 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RA | 800..2689 | 17..1906 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:15 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 891..2780 | 17..1906 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:15 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1389458..1390057 | 17..616 | 100 | -> | Plus |
| X | 1390276..1391565 | 617..1906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:03 Download gff for
BS10824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1283491..1284090 | 17..616 | 100 | -> | Plus |
| arm_X | 1284309..1285598 | 617..1906 | 100 | | Plus |
BS10824.3prime Sequence
910 bp (834 high quality bases) assembled on 2006-04-19
> BS10824.3prime
ATGGTCTAGAAAGCTTCTAGCTGGTGCTGGCCTGCGTCTGCAACACATTG
GCGGAAGCGGACGATGAGGCACTAGCGGCGGTCACGGCGACGGGCGAGAG
CACACTGGCTCCAGGGAAGTGGCACGGGCACGCAGGATTGGGCATGTGAT
TCGCCTGACTGTTCAGCTTGCGGGTGAGCGTCTGCCAGTATTCGATTTGG
GCGTTGATCAGGTCGATTTTCCGCTTGCTCTCCTCGATCCTCAGCGAATT
CATCAGCTCCTGGTGCTGGCTCCTCGTCCCACCGCTGCCACTTCCTCCGC
TGCCCGACGTGTGTGCCCCGCCGATCCCCAGGCCCACGCCGCTGTTGTTG
GCACTGCTCCCGCCGCTTCCGGCTCCGGATCCGCTGCTGTTCAAGGCGCT
GCACACTGTGCCCGCCACTGCCAGTCCGTTGTACCCGTTGAAACTGCCCG
CCGCCCCGATGGCCACGCCTCCTGTCTTGTCCCGCGCCAAATGGTTGTGC
GTCATCTGTGCGTGGTGGCCGCCGTTGAGCAACAGTTGCACTCCATTGGA
GGCCACCGCGGAATTGCTTGTGCTGCCGGCAGTGTGGTGGCTATTGTTGA
TGTTTCCGCGCTGAAGGCGTGGCAACTGCAGAGTGGGAGGGGTGCGGCGG
CTGCTAATGGCGACCGATGAAGATGGAGCGGCGGACCCATAGGCGGCATT
GATGGCCGCCTGCAGAGACTGAGCCGGATTCACGGCGGACAATCCTAGGC
CGTTCAGCAGCGTGTGCTGCTGCACTTGCTCCGCTGTGAGCGGCAGCACT
CCACTGGCACTGGAGCCGCCATTGCTGGCCGCTGATAGGACAGCTCCTGT
GCCGGAGCCGCCCGTCTGCAGCGTCTTGTTGATGTTGGCAAAGCTGCCCA
CGCGTATGTG
BS10824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PD | 1719 | CG32813-RD | 826..1719 | 910..17 | 4420 | 99.7 | Minus |
| CG32813-PE | 1887 | CG32813-RE | 994..1887 | 910..17 | 4420 | 99.7 | Minus |
| CG32813-PC | 1881 | CG32813-RC | 988..1881 | 910..17 | 4420 | 99.7 | Minus |
| CG32813-PB | 1719 | CG32813-RB | 826..1719 | 910..17 | 4420 | 99.7 | Minus |
| CG32813-PA | 1890 | CG32813-RA | 997..1890 | 910..17 | 4420 | 99.7 | Minus |
| CG32813-PF | 2193 | CG32813-RF | 997..1862 | 910..45 | 4280 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 1887..2780 | 910..17 | 4440 | 99.8 | Minus |
| CG32813-RJ | 3254 | CG32813-RJ | 1083..1976 | 910..17 | 4440 | 99.8 | Minus |
| CG32813-RI | 3726 | CG32813-RI | 1920..2813 | 910..17 | 4440 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 11:19:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1390672..1391565 | 910..17 | 4440 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-01 11:19:07 has no hits.
BS10824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:55 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PC | 988..1881 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:49 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PA | 997..1890 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:36:32 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RI | 1920..2813 | 17..910 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:11:19 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RI | 1920..2813 | 17..910 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:11:19 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1390672..1391565 | 17..910 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:36:32 Download gff for
BS10824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1284705..1285598 | 17..910 | 99 | | Minus |
BS10824.5prime Sequence
897 bp (717 high quality bases) assembled on 2006-04-19
> BS10824.5prime
GAAGTTATCAGTCGACATGGTCGCTGGTCAGTGTGTCGCTGGTCACTGTG
TGGAGCACAGATGGTGGCCACTTCGGCCCTCTTCGCTGCCGATAGAAGGG
ATAGAAGGCCCATGCAAAGCTCCAGAGAATAACACAGTGTGCATTACTTT
CTCCCCCAGCTTCACGACGTCTTGCAAACGGTTGAAAATGGAGAAGACTC
CCCGGTACACGCAGCGGGAGCGGAACATGGTGTTGAGCTACGCGGCGCAG
TACAAGGATGTGATCGAGAACAAGCGCACGGACGCGGAGTCCAACCGCAA
GAAGGACGAGGTGTGGCTGCAGATCGCCAAGGAGTTCAACTCGCGGGTCT
ACCACCAGCGCAGCGCCAAGCAGCTGCGCCAGCTTTACAAGAACATGAAG
CTGCTGCTCAAAAAGGACCTATGCGGCGAGGACAAGAGCAACCATTCGTT
CATGGACCTGCTCAACACGCTGTCGCACCAGGAGTCCGTGGCCCAGTACA
TTGCCGAGCAGCTGTCGCCGGAGGGCGCGGGCGGTGGCGGCGGCGGCGGT
AAGCAAGGCGGCGCGGGCAACGGAGGCGGAAACGGACACCAATCGGACGA
CTACGACGACTCCAAGATGCCCCACTACCACGAGGGCATGGACACGGACG
TGATCCTTATCAAGTCGGAGACAATTAGCGACAACGAGCAGACGGACAAT
GGCATGGACTGCCTGGACGAGGACGATGACGACGACTGCTTGAGCCACAA
GGCGCCGGAGGTGTGCCTCGAGGAGGAGGACGACGTGCTCTTTCCACGGA
CGTGCGCCAGCTGCAGCAGGTGGGATCGTCCGGAGCCGCCGGCGGTGGTG
TCTCCGGAGGCTCCCTTCCCGGAAACATGTCTAGCAACGGGATTACC
BS10824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PA | 1890 | CG32813-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
| CG32813-PF | 2193 | CG32813-RF | 1..780 | 17..796 | 3900 | 100 | Plus |
| CG32813-PE | 1887 | CG32813-RE | 138..777 | 157..796 | 3200 | 100 | Plus |
| CG32813-PC | 1881 | CG32813-RC | 135..771 | 160..796 | 3185 | 100 | Plus |
| CG32813-PD | 1719 | CG32813-RD | 1..609 | 188..796 | 3045 | 100 | Plus |
| CG32813-PB | 1719 | CG32813-RB | 1..609 | 188..796 | 3045 | 100 | Plus |
| CG32813-PA | 1890 | CG32813-RA | 781..882 | 796..897 | 510 | 100 | Plus |
| CG32813-PF | 2193 | CG32813-RF | 781..882 | 796..897 | 510 | 100 | Plus |
| CG32813-PE | 1887 | CG32813-RE | 778..879 | 796..897 | 510 | 100 | Plus |
| CG32813-PC | 1881 | CG32813-RC | 772..873 | 796..897 | 510 | 100 | Plus |
| CG32813-PD | 1719 | CG32813-RD | 610..711 | 796..897 | 510 | 100 | Plus |
| CG32813-PB | 1719 | CG32813-RB | 610..711 | 796..897 | 510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:42:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-RK | 4058 | CG32813-RK | 891..1772 | 17..897 | 4385 | 99.9 | Plus |
| CG32813-RN | 3585 | CG32813-RN | 557..1299 | 156..897 | 3690 | 99.9 | Plus |
| CG32813-RL | 3484 | CG32813-RL | 456..1198 | 156..897 | 3690 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 05:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1389458..1390057 | 17..616 | 3000 | 100 | Plus |
| X | 23542271 | X | 1390274..1390557 | 615..897 | 1370 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 05:42:04 has no hits.
BS10824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:56 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:50 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-PF | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:53:35 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1772 | 13..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 07:30:47 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32813-RK | 889..1772 | 13..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 07:30:47 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1389456..1390057 | 13..616 | 99 | -> | Plus |
| X | 1390276..1390557 | 617..897 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:53:35 Download gff for
BS10824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1283489..1284090 | 13..616 | 99 | -> | Plus |
| arm_X | 1284309..1284590 | 617..897 | 99 | | Plus |
BS10824.pep Sequence
Translation from 16 to 1905
> BS10824.pep
MVAGQCVAGHCVEHRWWPLRPSSLPIEGIEGPCKAPENNTVCITFSPSFT
TSCKRLKMEKTPRYTQRERNMVLSYAAQYKDVIENKRTDAESNRKKDEVW
LQIAKEFNSRVYHQRSAKQLRQLYKNMKLLLKKDLCGEDKSNHSFMDLLN
TLSHQESVAQYIAEQLSPEGAGGGGGGGKQGGAGNGGGNGHQSDDYDDSK
MPHYHEGMDTDVILIKSETISDNEQTDNGMDCLDEDDDDDCLSHKAPEVC
LEEEDDVLFPTDVRQLQQVGSSGAAGGGVSGGSLPGNMSSNGITETSRRA
ASSPVCSTKTSISSSGSYASAPKPDITIQTVGHIRVGSFANINKTLQNGG
SGTGAVLSAASNGGSSASGVLPLTAEQVQQHTLLNGLGLSAVNPAQSLQA
AINAAYGSAAPSSSVAISSRRTPPTLQLPRLQRGNINNSHHTAGSTSNSA
VASNGVQLLLNGGHHAQMTHNHLARDKTGGVAIGAAGSFNGYNGLAVAGT
VCSALNSSGSGAGSGGSSANNSGVGLGIGGAHTSGSGGSGSGGTRSQHQE
LMNSLRIEESKRKIDLINAQIEYWQTLTRKLNSQANHMPNPACPCHFPGA
SVLSPVAVTAASASSSASANVLQTQASTS*
BS10824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32813-PK | 572 | CG32813-PK | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PJ | 572 | CG32813-PJ | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PI | 572 | CG32813-PI | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PN | 572 | CG32813-PN | 1..572 | 58..629 | 2938 | 100 | Plus |
| CG32813-PM | 572 | CG32813-PM | 1..572 | 58..629 | 2938 | 100 | Plus |
