Clone Sequence Records
BS10829.3prime Sequence
933 bp (814 high quality bases) assembled on 2006-04-19
> BS10829.3prime
ATGGTCTAGAAAGCTTCTATTTGCGACGGCGACTCTTGCCCCGCCCACTG
CCCTCCTCCTCCGCGGCGTGCTCCTCGCTGTCCTCCGGCAAAGCGGATTT
CTCGATCATCGGTGTCTCGTTGCCCGACTTGATGGCGGCTATTAGGAAAC
GAAGTTGCATCAGCTGCACGGCCGTCACGCGGGGATTGCTGCAATTCTCC
AGCCACTGCAGGAACTTTTCGCCATGGCGGATGGCCTCGATATCCTCGTC
CGCCGTGCAGTCCAGATACTTGGCCTTCTCCTCCTCGTCCGTTTTGTTTG
AGTTATTATTGTTATTGTTATTGCTGGCGCTCACATCGTTGTTGTTCGTA
TGCGGATTGCTGGTGTCCTGGAAGCTGCCCTCCGATTCGGAGGATCCCTG
TTCCGGCATCAACGGACCAGTGGCCTCCATTCCGCCCATCTTGAAGAGCA
TATTGTCTAGGATCTTCTTGCATTCGCTTGTGGAATTCGTGGTCTCTGGG
GTTTTGGTCTTCGCCTTTGGTTCGGGACTCCTGCTGCCTGATGAATGGGC
AATGGGACTTTGCGAAGGGGTCATCACTTTGCCGGCGGCTGAGAGATCCT
CCGGTTTCCCGGATGCCTCCGGCTCCACTTCGCCATCGAGATCGGTTTCG
GTGGCCTCGTCAGCCTCGGGATTCTGTTCGTTGGAGGACAAACTTCTCAC
CGACGGCGTCTCAGTCTCTTTCGTGAGATGGGAGTACAGTATGTTCGAGG
GATCTCCCATGGATCCCCCCTCTGCGGCCGTGGTGGCCACCTGCTGCTGC
AGTTGGTTGGCTTGCANGGCGGCCAAGGTGGCGGCATTGGGATTCAGGGT
ATGCAGACTGGCACCGAACGCCTTGCACCAGTTGTACCACGCCGCGTTCT
TCTCGTCCAGACTGCCCGACGGTGTGGACGAGG
BS10829.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11849-PA | 2037 | dan-RA | 1121..2037 | 933..17 | 4566 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 2221..3137 | 933..17 | 4574 | 99.9 | Minus |
| dan-RB | 3340 | CG11849-RB | 1593..2509 | 933..17 | 4574 | 99.9 | Minus |
| dan-RA | 3340 | CG11849-RA | 1593..2509 | 933..17 | 4574 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25191059..25191975 | 933..17 | 4574 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-11 10:34:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2845..2927 | 351..270 | 143 | 67.1 | Minus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2739..2821 | 351..270 | 143 | 67.1 | Minus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2608..2669 | 346..285 | 112 | 64.5 | Minus |
BS10829.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:50:59 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-PA | 1121..2037 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:55 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11849-PA | 1121..2037 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:35:30 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 1593..2509 | 17..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:27 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 1593..2509 | 17..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:27 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25191059..25191975 | 17..933 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:35:30 Download gff for
BS10829.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21016781..21017697 | 17..933 | 99 | | Minus |
BS10829.5prime Sequence
716 bp (626 high quality bases) assembled on 2006-04-19
> BS10829.5prime
GAAGTTATCAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTC
CCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATC
CACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGA
GTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGT
CCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAG
ATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGAGGTCTTCT
GGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCCCCTGAACT
TCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGATCCCCTCTG
AATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTTGGGTACAA
TGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAAGGCCAAAG
TGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCCTAAATGCA
ATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACGGGCATATC
ACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAACCTCAACT
TGCTGGCCCAGCTGAATCCCGGTCTGGAGGTCTTGTCGGGTCTAAACTGT
TTCCCATCGGTCGCTG
BS10829.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11849-PA | 2037 | dan-RA | 1..690 | 17..706 | 3350 | 99.4 | Plus |
| CG13651-PA | 1260 | danr-RA | 140..216 | 132..208 | 210 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 1099..1800 | 15..716 | 3420 | 99.1 | Plus |
| dan-RB | 3340 | CG11849-RB | 471..1172 | 15..716 | 3420 | 99.1 | Plus |
| dan-RA | 3340 | CG11849-RA | 471..1172 | 15..716 | 3420 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:45:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25189937..25190638 | 15..716 | 3420 | 99.1 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 15..208 | 445 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:45:23 has no hits.
BS10829.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:00 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-PA | 1..700 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:15:56 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11849-PA | 1..700 | 17..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:50:07 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..1172 | 15..716 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:53:05 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..1172 | 15..716 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:05 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25189937..25190638 | 15..716 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:50:07 Download gff for
BS10829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21015659..21016360 | 15..716 | 99 | | Plus |
BS10829.complete Sequence
2069 bp assembled on 2008-08-15
GenBank Submission: KX801907
> BS10829.complete
GAAGTTATCAGTCGACATGAACATCCGCATGGGCACAAAGGGCAAGCGTC
CCCTGCGGAGCCTGACGCCCCGCGACAAGATCCATGCCATCCAGAGGATC
CACGATGGCGAGTCCAAGGCCTCGGTGGCCAGGGACATCGGCGTGCCCGA
GTCCACGCTGCGCGGCTGGTGCAAGAACGAGGACAAGCTCCGCTTCATGT
CCCGCCAGTCTGCCACGGATAACCTCTGCGCCGACGCCCTGGGCGATAAG
ATGGATGGAGGAGGAGGAGGAGGTGGTGGAGCAGGCGGCGGAGGTCTTCT
GGGACCGCCGGAGAAACGCCAGCGTTTGGACGGCGCCCTGCCCCTGAACT
TCTCCAACAAACTGAAGTTCGATGAGCTGGCCTTCAAGCGATCCCCTCTG
AATGGCCTGGACTACAGTACAAACAAGAATCTGGCCGATCTTGGGTACAA
TGGGCTGCCCGTAGACTATGCGGCCTTTAATGGCGGGGTCAAGGCCAAAG
TGTTTGGTGCCGATATCAACAGACCCGCCGCCGATCCCTCCCTAAATGCA
ATTAGTCCGCTCTCTAGCTTGACGCACCTTTCGGGTCTCACGGGCATATC
ACAATCCCCGCTGGCGATCAGTTTCAACGAGCTGACCACAAACCTCAACT
TGCTGGCCCAGCTGAATCCCGGTCTGGCGGCCATGTCGGGTCTAAACAGT
TTCCCAGCGGGCGCTGGTAACCTGAGGACCCCGAAGCCCAGTGGCCAAAC
GCCGCTGCAGGTGCAGAGCCCCAGGAGCGATAGTGGAGATCGATCGGCGC
AGGGATTGTCGGTAAAGAACTGGGCCAAACAGAAGCCGGGGGAGGGCCAG
GGCAGCCTCAATCTGAGCATCAAGAACGAGGGCAAGGGAGGCGATATCAA
GAGTCCCAGTCCTTCGATTGCTCCTTCGCAAATGGGCGGGCCCATGACGC
TCTCCAATCTGGCCGAAGATCCCTTGCTCTACTGGCTCAAGTCGCAGCAG
ACCATGTTGGGTCTGAATCCCCTTTATCCGCCCACAATTCCCATGGGCGT
GACCAGTCCCCCTATCAGATCTTCCACGCCGCAGCACATGAGTCAGTTGG
CACAGACTCCGCCGATACCCTCGGCTCCGCTAACACCCTCGTCCACACCG
TCGGGCAGTCTGGACGAGAAGAACGCGGCGTGGTACAACTGGTGCAAGGC
GTTCGGTGCCAGTCTGCATACCCTGAATCCCAATGCCGCCACCTTGGCCG
CCCTGCAAGCCAACCAACTGCAGCAGCAGGTGGCCACCACGGCCGCAGAG
GGGGGATCCATGGGAGATCCCTCGAACATACTGTACTCCCATCTCACGAA
AGAGACTGAGACGCCGTCGGTGAGAAGTTTGTCCTCCAACGAACAGAATC
CCGAGGCTGACGAGGCCACCGAAACCGATCTCGATGGCGAAGTGGAGCCG
GAGGCATCCGGGAAACCGGAGGATCTCTCAGCCGCCGGCAAAGTGATGAC
CCCTTCGCAAAGTCCCATTGCCCATTCATCAGGCAGCAGGAGTCCCGAAC
CAAAGGCGAAGACCAAAACCCCAGAGACCACGAATTCCACAAGCGAATGC
AAGAAGATCCTAGACAATATGCTCTTCAAGATGGGCGGAATGGAGGCCAC
TGGTCCGTTGATGCCGGAACAGGGATCCTCCGAATCGGAGGGCAGCTTCC
AGGACACCAGCAATCCGCATACGAACAACAACGATGTGAGCGCCAGCAAT
AACAATAACAATAATAACTCAAACAAAACGGACGAGGAGGAGAAGGCCAA
GTATCTGGACTGCACGGCGGACGAGGATATCGAGGCCATCCGCCATGGCG
AAAAGTTCCTGCAGTGGCTGGAGAATTGCAGCAATCCCCGCGTGACGGCC
GTGCAGCTGATGCAACTTCGTTTCCTAATAGCCGCCATCAAGTCGGGCAA
CGAGACACCGATGATCGAGAAATCCGCTTTGCCGGAGGACAGCGAGGAGC
ACGCCGCGGAGGAGGAGGGCAGTGGGCGGGGCAAGAGTCGCCGTCGCAAA
TAGAAGCTTTCTAGACCAT
BS10829.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:14:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 2037 | CG11849-PC | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| dan-RB | 2346 | CG11849-PB | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| dan-RA | 2037 | CG11849-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-RC | 3968 | CG11849-RC | 1099..3137 | 15..2053 | 10195 | 100 | Plus |
| dan-RB | 3340 | CG11849-RB | 471..2509 | 15..2053 | 10195 | 100 | Plus |
| dan-RA | 3340 | CG11849-RA | 471..2509 | 15..2053 | 10195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25189937..25191975 | 15..2053 | 10195 | 100 | Plus |
| 3R | 32079331 | 3R | 25138255..25138448 | 15..208 | 445 | 82 | Plus |
Blast to na_te.dros performed 2014-11-27 14:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stalker4 | 7359 | Stalker4 STALKER4 7359bp | 2845..2927 | 1719..1800 | 143 | 67.1 | Plus |
| Stalker | 7256 | Stalker STALKER 7256bp | 2739..2821 | 1719..1800 | 143 | 67.1 | Plus |
BS10829.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:29:18 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 469..2507 | 15..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:33 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 473..2503 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:31 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 471..2501 | 17..2047 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:39 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dan-RA | 473..2503 | 17..2047 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:39 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25189939..25191969 | 17..2047 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:33 Download gff for
BS10829.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21015661..21017691 | 17..2047 | 100 | | Plus |
BS10829.pep Sequence
Translation from 16 to 2052
> BS10829.pep
MNIRMGTKGKRPLRSLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRG
WCKNEDKLRFMSRQSATDNLCADALGDKMDGGGGGGGGAGGGGLLGPPEK
RQRLDGALPLNFSNKLKFDELAFKRSPLNGLDYSTNKNLADLGYNGLPVD
YAAFNGGVKAKVFGADINRPAADPSLNAISPLSSLTHLSGLTGISQSPLA
ISFNELTTNLNLLAQLNPGLAAMSGLNSFPAGAGNLRTPKPSGQTPLQVQ
SPRSDSGDRSAQGLSVKNWAKQKPGEGQGSLNLSIKNEGKGGDIKSPSPS
IAPSQMGGPMTLSNLAEDPLLYWLKSQQTMLGLNPLYPPTIPMGVTSPPI
RSSTPQHMSQLAQTPPIPSAPLTPSSTPSGSLDEKNAAWYNWCKAFGASL
HTLNPNAATLAALQANQLQQQVATTAAEGGSMGDPSNILYSHLTKETETP
SVRSLSSNEQNPEADEATETDLDGEVEPEASGKPEDLSAAGKVMTPSQSP
IAHSSGSRSPEPKAKTKTPETTNSTSECKKILDNMLFKMGGMEATGPLMP
EQGSSESEGSFQDTSNPHTNNNDVSASNNNNNNNSNKTDEEEKAKYLDCT
ADEDIEAIRHGEKFLQWLENCSNPRVTAVQLMQLRFLIAAIKSGNETPMI
EKSALPEDSEEHAAEEEGSGRGKSRRRK*
BS10829.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dan-PC | 678 | CG11849-PC | 1..678 | 1..678 | 3524 | 100 | Plus |
| dan-PB | 781 | CG11849-PB | 1..678 | 1..678 | 3524 | 100 | Plus |
| dan-PA | 678 | CG11849-PA | 1..678 | 1..678 | 3524 | 100 | Plus |
| danr-PA | 419 | CG13651-PA | 9..408 | 1..500 | 406 | 31.1 | Plus |
