Clone BS10834 Report

Search the DGRC for BS10834

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptSIDL-RA
Protein status:BS10834.pep: full length peptide match
Sequenced Size:3470

Clone Sequence Records

BS10834.3prime Sequence

944 bp (869 high quality bases) assembled on 2006-04-19

> BS10834.3prime
ATGGTCTAGAAAGCTTTCATTGATCCCCCGCCACACTTGCGATGACATGG
ATCTGCATGCTCTTCGTGGAGTTGTAGACTTGACCGGGCGGAAAGGGATG
CACCTTGGAGTGGCCATCGGTTTTACTTTTGCCACCGGCAGTATACTTGG
ATAATCGAATGCTGGGCATTGGTAGAAAGCCGGTGCTCAGCGGCATTACA
TCCAGCGATATGGAATGACTGTCGACGTCCTTCATGGATACGACACCCGC
TGAGCGACCGCAAACGGCCCACAGATTCTGATCGTTGAGCACCTCGTACA
TGAGATCCGTGTAGGGATTCTCATGCACCTTGGTGATCTTCAAGTTCATG
TTGCACACGGTGCGCAGACGGCACAGTTCATTGGGTTCCAGCTGCGCCTG
CAACTTAAAGAGCGTTGTGTAGTCCACCAGATCAAAAGCGCAGCCATACG
TTCTCCACACATCAGGCTGCGACAGTGATGCGTATTTGATTACAAAATGC
ACTTTTACGACGGGCAGCTCGTGCTCCGTTTTGAGGGGCTCAACTTGAAT
CTCGTACAGATAAGTTACAGTCAGGGATTTGTAGATTTCAATGGGCTGCT
GGGATTCCGGATTAAGATCCAACAATTGCACACCGGGCACATCGCACTTG
ACTTGAGCGTGCTGCAAAAGGAGATGTGCTTCCATGCCCTTCATGATCAC
CTGCAGGAACTTCTGAGTGCCACACGTGTGAAGCCGGCAAGTGGCCTCCA
TGGCTGGTTGAAAATCGACGGCGATTGGGAGCTCAGTTCGAGACCATGGA
CAATTGAGGGCGATGTGATGCTCATGGTGTTTAGACACCTTTCGGCCCGG
CATATCAGTGAGAACCTCCAGTGGGATCCTACGTTCCTCGAACGATTTGA
ATTGCACTAGTGGCACTTGAAGCGTACTCTCAAATGATTGGTCA

BS10834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6623-PA 3438 CG6623-RA 2511..3438 944..17 4640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
SIDL-RA 3634 CG6623-RA 2608..3535 944..17 4640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15215743..15216098 589..944 1780 100 Plus
3R 32079331 3R 15215337..15215681 245..589 1725 100 Plus
3R 32079331 3R 15214861..15215091 17..247 1155 100 Plus
Blast to na_te.dros performed 2015-02-11 12:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5649..5688 529..490 119 77.5 Minus

BS10834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:09 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6623-PA 2512..3438 17..943 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:06 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6623-PA 2512..3438 17..943 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 23:22:47 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 2609..3540 13..943 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:38:42 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 2609..3540 13..943 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:38:42 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15215339..15215681 247..589 100 <- Plus
3R 15214856..15215090 13..246 99 <- Plus
3R 15215744..15216097 590..943 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 23:22:47 Download gff for BS10834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040578..11040812 13..246 99 <- Plus
arm_3R 11041061..11041403 247..589 100 <- Plus
arm_3R 11041466..11041819 590..943 100   Plus

BS10834.5prime Sequence

784 bp (761 high quality bases) assembled on 2006-04-19

> BS10834.5prime
GAAGTTATCAGTCGACATGCAGATAAAGCCCATAATAACATACTCTGGCT
CGTGCCCGCTGTTCCGATCGCTGGAGTCCCAGATCCTGAACGCGATTCCA
CTGGACACTTGCGAGTGGCGACGCACTTTCCAACGCCCCACGAAACATGT
TCGCTTGGAAGCCCAGGCACAGCAGTTCAATGTTGCGGCCTTGGAGAAGT
ACAAGCAGGGTGACTGGAGCATCTTGGAGCACCCCATACTGCACATTTTC
GTCACCGAGTGCAATGATGTGGACACCTACAAAGCCACGATCAGGGAGGC
AATCGACATTTGGTTAAAAACATTAACCAGTTATGGCGTCTCGGATTGGA
TGATTCTGTTGGTCGAAACACTGGACATGCGGAAGACAAAGAACTTCATG
CCACGCACCACTGTGCTAGATAAGATACGGTTGGATTTTGGCACGAAGAA
CGACGACCGCTGCATCTCAGTTCTGAACCCGGCCAAGTTTGAACAGAAAT
CCACCGAGTCCTTCCGCTGCCTAGTGCAGCGTATTCGCTTCCTTATGCTC
ACCAGCTACAATCGGAACATAGTTAAGTACGAGGAACTAATACGGAGCAA
GCGCGAAAAGAGAAACATTGAAGGCTGGGATTTCCGCCAATACTTCTTTA
TGCAGGAAGACCTTGCGTTGATCTTTGAAAAGCTGGAATTGCCCACCGAG
GCGTTGATACAGTACGATGAACTGGACGCCATGTTCTCGCAGTTCATAAC
TCACACTGGTCTCCACGAGAAACAGCAGTGGTTG

BS10834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6623-PA 3438 CG6623-RA 1..768 17..784 3790 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
SIDL-RA 3634 CG6623-RA 98..865 17..784 3810 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15217900..15218418 784..266 2565 99.6 Minus
3R 32079331 3R 15218475..15218703 266..38 1130 99.6 Minus
Blast to na_te.dros performed on 2015-02-11 15:01:08 has no hits.

BS10834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:10 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6623-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:08 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6623-PA 1..768 17..784 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 09:05:15 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 98..865 17..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:12:48 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 98..865 17..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:12:48 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15217900..15218418 266..784 99 <- Minus
3R 15218476..15218699 42..265 100 <- Minus
3R 15218753..15218777 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 09:05:15 Download gff for BS10834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11043622..11044140 266..784 99 <- Minus
arm_3R 11044198..11044421 42..265 100 <- Minus
arm_3R 11044475..11044499 17..41 100   Minus

BS10834.complete Sequence

3470 bp assembled on 2008-08-14

GenBank Submission: FJ636736

> BS10834.complete
GAAGTTATCAGTCGACATGCAGATAAAGCCCATAATAACATACTCTGGCT
CGTGCCCGCTGTTCCGATCGCTGGAGTCCCAGATCCTGAACGCGATTCCA
CTGGACACTTGCGAGTGGCGACGCACTTTCCAACGCCCCACGAAACATGT
TCGCTTGGAAGCCCAGGCACAGCAGTTCAATGTTGCGGCCTTGGAGAAGT
ACAAGCAGGGTGACTGGAGCATCTTGGAGCACCCCATACTGCACATTTTC
GTCACCGAGTGCAATGATGTGGACACCTACAAAGCCACGATCAGGGAGGC
AATCGACATTTGGTTAAAAACATTAACCAGTTATGGCGTCTCGGATTGGA
TGATTCTGTTGGTCGAAACACTGGACATGCGGAAGACAAAGAACTTCATG
CCACGCACCACTGTGCTAGATAAGATACGGTTGGATTTTGGCACGAAGAA
CGACGACCGCTGCATCTCAGTTCTGAACCCGGCCAAGTTTGAACAGAAAT
CCACCGAGTCCTTCCGCTGCCTAGTGCAGCGTATTCGCTTCCTTATGCTC
ACCAGCTACAATCGGAACATAGTTAAGTACGAGGAACTAATACGGAGCAA
GCGCGAAAAGAGAAACATTGAAGGCTGGGATTTCCGCCAATACTTCTTTA
TGCAGGAAGACCTTGCGTTGATCTTTGAAAAGCTGGAATTGCCCACCGAG
GCGTTGATACAGTACGATGAACTGGACGCCATGTTCTCGCAGTTCATAAC
TCACACTGGTCTCAACGAGAAGCAGCAGTGGTTGAACCATTTTCGCAAGC
CCCTGGACGCTTTCCATGGTATATGTCTGACCCGAGCGGACAAGTTCGAA
ATGAGGAACAAAATCCGCGATGAAGGCGTTTCTCTGTTGGAATTCCGCAA
CTATCTTTTCGAACGTCAAGCCTATTTGCTGCTTACTTGCAATGACATCC
CAGAAATCGCGAAGAGGCTTCTGAACTTTTTGTTTTCCACACTGCGCGAG
GTGGAGCTCATAAAGCTGGAGTGTCAGGAGGGCGCTCTTTGCTGTTGGGA
GTTTGTTTGTGCTCTGGAAGTCCTGCAGCTGTGCGAACAGGCTATGGAAC
CCAACGAGCTAACATGTTTCCAGCACTGTGCTCCCATCTGGAACTTGGCC
AAGGATAAGCTCTACGAGCTCGGCAAACTGTGTGGCCTCTTGCCCGGCTG
CACGCCAACTTCGGAGCAGTTGCACATAGTGGTGCAGCTATCGTCGGGAA
TTGGAGATGCGCCGTCCGAGCAGCATCAGTTCCTCCAGGCGACACCTCAG
CTACGAGACCGGTCTCCCAATCGTAAGCCCAAGAAATCGGGGGCTGAGCA
GCTTAAGGAAGCCCTGGGCTCGAATCAAGCCTTCCAGAAGCTCTACCTGG
AGCTGGCAGAGTTGGCCATCAGTACGTACAAGCATGTGACACGCTTGCGA
TCGGCCCGTTTGGTTGGCCTGGACCTGGGAAACTTCTACTGCGCTCTAAA
TGAGCCACATAAAGCTGTTGGATTCTTTACGGATCTTCTCAGGGAGCTGA
AGGCAGAGAACTGGCACATGCTGAGCTCGCAGACGCTGCTTGAACTAGCT
AACTGCTACCGCAAGATGGGCGACTCGCTGGCCTACACCAAGACATGTAG
CTCCATCTCGTGTTGCGCAGAACTAGAGACCTTAGTGCGAACATTTTATT
TCGACGAGTTTCTCAAGTCACTGAAAACACTTAAGACGACGCTTTCGGCA
CAGCCGTCGATAGAGAATGCCAACTATTGTGTACTGGAGGATCACTTTCG
CATTCTGGACATCGAGGTTGTTAACCAGAAACCTATTATACAGGATGATT
ATATTCTAGTGCAGCTAAAAGTAGAAAGTCTCTATCCGCGCGGGGTCGTA
GCTGAAAATGTTAAGCTTTGTTACGAATTGGAAGCTTCCTCTCTGGAGCT
GGCCATGGAGAATGTCAGCCTAACTGCCTCCCCGTCGACGGTAAAGGCCA
AGGACACCTCATCACGATTAAAGGTCTCGCTTCAGCTAGTCTACAAACAG
GACAATCGCCTGCACTCTGCCGCTGTGGCCTGCGACTTGCCAAAAAGCAA
GCAACCCGTGCGACGAACAAGCAGCACCAAGCGCAAACTTTCACCAAGTG
TCCAGGCGGACTTCACCAATTTTGTTCAAGCGGAAAACATTGCCCTTCAG
CCGGGCGTAAACCTAATTGAGATGAAGGCAAAGGCCACTCGAGTGGGCTG
CTGGCAATTCAAACAGCTATGTATTAGCATGTCCAGCCTGGAGTTCTTGT
CGGAACAGCTGCCATTTATGCCTGCCACCTTTGAGATTAGCACCAAGCCG
GCAAGTGCCACGCTGGAATTCAAGACTCTGATAGCTGGCATAGTGCAGCC
GATTAGCCTAAATGTCTCCGGTGGCAGTTTCATCTTTCCGCCCGATGCAA
AAATCACACTGCGTTGCTCCAAGAATCTTCGCATTCGACAGGCGCGAAAT
ACGGATGATGAAGCAGCCTATAATGATGACCAATCATTTGAGAGTACGCT
TCAAGTGCCACTAGTGCAATTCAAATCGTTCGAGGAACGTAGGATCCCAC
TGGAGGTTCTCACTGATATGCCGGGCCGAAAGGTGTCTAAACACCATGAG
CATCACATCGCCCTCAATTGTCCATGGTCTCGAACTGAGCTCCCAATCGC
CGTCGATTTTCAACCAGCCATGGAGGCCACTTGCCGGCTTCACACGTGTG
GCACTCAGAAGTTCCTGCAGGTGATCATGAAGGGCATGGAAGCACATCTC
CTTTTGCAGCACGCTCAAGTCAAGTGCGATGTGCCCGGTGTGCAATTGTT
GGATCTTAATCCGGAATCCCAGCAGCCCATTGAAATCTACAAATCCCTGA
CTGTAACTTATCTGTACGAGATTCAAGTTGAGCCCCTCAAAACGGAGCAC
GAGCTGCCCGTCGTAAAAGTGCATTTTGTAATCAAATACGCATCACTGTC
GCAGCCTGATGTGTGGAGAACGTATGGCTGCGCTTTTGATCTGGTGGACT
ACACAACGCTCTTTAAGTTGCAGGCGCAGCTGGAACCCAATGAACTGTGC
CGTCTGCGCACCGTGTGCAACATGAACTTGAAGATCACCAAGGTGCATGA
GAATCCCTACACGGATCTCATGTACGAGGTGCTCAACGATCAGAATCTGT
GGGCCGTTTGCGGTCGCTCAGCGGGTGTCGTATCCATGAAGGACGTCGAC
AGTCATTCCATATCGCTGGATGTAATGCCGCTGAGCACCGGCTTTCTACC
AATGCCCAGCATTCGATTATCCAAGTATACTGCCGGTGGCAAAAGTAAAA
CCGATGGCCACTCCAAGGTGCATCCCTTTCCGCCCGGTCAAGTCTACAAC
TCCACGAAGAGCATGCAGATCCATGTCATCGCAAGTGTGGCGGGGGATCA
ATGAAAGCTTTCTAGACCAT

BS10834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
SIDL-RA 3438 CG6623-PA 1..3438 17..3454 17190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
SIDL-RA 3634 CG6623-RA 98..3535 17..3454 17190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15216418..15218418 2266..266 10005 100 Minus
3R 32079331 3R 15215743..15216360 2882..2265 3090 100 Minus
3R 32079331 3R 15215337..15215681 3226..2882 1725 100 Minus
3R 32079331 3R 15214861..15215091 3454..3224 1155 100 Minus
3R 32079331 3R 15218475..15218703 266..38 1130 99.6 Minus
Blast to na_te.dros performed 2014-11-27 01:52:17
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 5649..5688 2942..2981 119 77.5 Plus

BS10834.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:48:58 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG6623-RA 98..3540 17..3458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:50 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 98..3534 17..3453 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:05:18 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
CG6623-RA 98..3534 17..3453 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:21 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
SIDL-RA 98..3534 17..3453 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:21 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15215339..15215681 2882..3224 100 <- Minus
3R 15214862..15215090 3225..3453 100 <- Minus
3R 15215744..15216358 2267..2881 100 <- Minus
3R 15216418..15218418 266..2266 100 <- Minus
3R 15218476..15218699 42..265 100 <- Minus
3R 15218753..15218777 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:50 Download gff for BS10834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11040584..11040812 3225..3453 100 <- Minus
arm_3R 11041061..11041403 2882..3224 100 <- Minus
arm_3R 11041466..11042080 2267..2881 100 <- Minus
arm_3R 11042140..11044140 266..2266 100 <- Minus
arm_3R 11044198..11044421 42..265 100 <- Minus
arm_3R 11044475..11044499 17..41 100   Minus

BS10834.pep Sequence

Translation from 16 to 3453

> BS10834.pep
MQIKPIITYSGSCPLFRSLESQILNAIPLDTCEWRRTFQRPTKHVRLEAQ
AQQFNVAALEKYKQGDWSILEHPILHIFVTECNDVDTYKATIREAIDIWL
KTLTSYGVSDWMILLVETLDMRKTKNFMPRTTVLDKIRLDFGTKNDDRCI
SVLNPAKFEQKSTESFRCLVQRIRFLMLTSYNRNIVKYEELIRSKREKRN
IEGWDFRQYFFMQEDLALIFEKLELPTEALIQYDELDAMFSQFITHTGLN
EKQQWLNHFRKPLDAFHGICLTRADKFEMRNKIRDEGVSLLEFRNYLFER
QAYLLLTCNDIPEIAKRLLNFLFSTLREVELIKLECQEGALCCWEFVCAL
EVLQLCEQAMEPNELTCFQHCAPIWNLAKDKLYELGKLCGLLPGCTPTSE
QLHIVVQLSSGIGDAPSEQHQFLQATPQLRDRSPNRKPKKSGAEQLKEAL
GSNQAFQKLYLELAELAISTYKHVTRLRSARLVGLDLGNFYCALNEPHKA
VGFFTDLLRELKAENWHMLSSQTLLELANCYRKMGDSLAYTKTCSSISCC
AELETLVRTFYFDEFLKSLKTLKTTLSAQPSIENANYCVLEDHFRILDIE
VVNQKPIIQDDYILVQLKVESLYPRGVVAENVKLCYELEASSLELAMENV
SLTASPSTVKAKDTSSRLKVSLQLVYKQDNRLHSAAVACDLPKSKQPVRR
TSSTKRKLSPSVQADFTNFVQAENIALQPGVNLIEMKAKATRVGCWQFKQ
LCISMSSLEFLSEQLPFMPATFEISTKPASATLEFKTLIAGIVQPISLNV
SGGSFIFPPDAKITLRCSKNLRIRQARNTDDEAAYNDDQSFESTLQVPLV
QFKSFEERRIPLEVLTDMPGRKVSKHHEHHIALNCPWSRTELPIAVDFQP
AMEATCRLHTCGTQKFLQVIMKGMEAHLLLQHAQVKCDVPGVQLLDLNPE
SQQPIEIYKSLTVTYLYEIQVEPLKTEHELPVVKVHFVIKYASLSQPDVW
RTYGCAFDLVDYTTLFKLQAQLEPNELCRLRTVCNMNLKITKVHENPYTD
LMYEVLNDQNLWAVCGRSAGVVSMKDVDSHSISLDVMPLSTGFLPMPSIR
LSKYTAGGKSKTDGHSKVHPFPPGQVYNSTKSMQIHVIASVAGDQ*

BS10834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
SIDL-PA 1145 CG6623-PA 1..1145 1..1145 5966 100 Plus