Clone BS10835 Report

Search the DGRC for BS10835

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:108
Well:35
Vector:pDNR-Dual
Associated Gene/Transcriptemb-RA
Protein status:BS10835.pep: full length peptide match
Sequenced Size:3224

Clone Sequence Records

BS10835.complete Sequence

3224 bp assembled on 2009-12-07

GenBank Submission: KX800240

> BS10835.complete
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTCAAGGACACGATGGTTCAGTTGGAACAGATAGT
CGGCCAGAATATGAACATGAACCATGTGTTTAAGCATGGTTCCGACACAG
AGCAGGAGCTGGTCCTTAATTTGGCCATGTTCCTGTGCACCTTCCTCAAG
GAGCACGGCAAACTGGTGGAGGATGCCAAGTATGTGGACTACCTGAATCA
GGCGCTCATGTATTTGGTGATGATTAGCGAGGTGGAGGACGTGGAAGTAT
TCAAGATCTGTCTGGAATACTGGAACAGCCTTGTGGAGGATCTATACAAT
TCGGAATTCTTCCACCCCACCCTGGAGTCTACAAAGAGGCAACAAGTGTA
TCCCCGTCGACGTTTCTACGCCCCCATCCTGTCCAAAGTGCGATTCATTA
TGATCTCGCGCATGGCCAAGCCGGAGGAGGTGCTGGTGGTGGAGAACGAA
AACGGGGAAGTGGTGCGCGAGTTCATGAAGGACACAAACTCAATAAACCT
GTACAAGAACATGCGCGAAACGCTGGTCTTTCTTACCCATTTGGACTCTG
TGGACACGGACCGCATCATGACGCTAAAGCTGCTTAATCAGGTGAACGGA
TCGGAATTCTCTTGGAAGAACCTGAACACGTTGTGCTGGGCCATTGGTTC
CATATCCGGTGCTTTTTGTGAAGAGGACGAAAAACGGTTCCTGGTCACCG
TGATCAAGGATCTATTAGGCCTGTGCGAACAGAAGAAGGGCAAGGACAAC
AAGGCCATTATTGCCTCCAATATCATGTATGTGGTGGGACAGTATCCACG
CTTCCTGCGCGCCCATTGGAAGTTCCTCAAGACGGTGGTAAACAAACTCT
TCGAATTTATGCACGAAACGCACGATGGTGTCCAGGATATGGCATGCGAT
ACGTTCATCAAGATAGCCATCAAATGCCGCCGCTACTTTGTCACCATCCA
GCCGAATGAGGCATGCACCTTTATTGACGAGATTCTCACAACAATGAGCA
GCATCATTTGTGATCTGCAGCCGCAGCAGGTTCACACGTTCTATGAAGCT
GTCGGCTACATGATCTCCGCCCAGGTGGATCAGGTACAACAGGACGTCCT
CATCGAGAGGTACATGCAACTGCCCAACCAGGTGTGGGATGACATCATCT
CCCGCGCCTCGAAAAACGTTGACTTCTTGAAGAACATGACCGCTGTCAAG
CAGCTGGGCAGCATCCTTAAAACGAATGTGGCTGCCTGCAAAGCCCTGGG
TCACGCGTATGTCATTCAACTGGGCCGCATATATCTGGACATGCTGAATG
TGTACAAGATAACATCAGAGAATATCATTCAGGCCATCGAGGTGAATGGC
GTCAATGTGAACAATCAGCCCCTGATCAAAACCATGCATGTGGTCAAGAA
GGAGACGCTTAACTTGATATCCGAGTGGGTGTCTCGTTCCAACGACAATC
AGTTGGTGATGGACAATTTCATACCGCCTTTGCTGGACGCTATACTGCTA
GATTATCAGCGCTGCAAAGTTCCATCGGCACGGGAGCCCAAGGTTTTAAG
TGCGATGGCAATCATTGTGCATAAACTGCGTCAGCATATCACAAATGAAG
TACCAAAAATATTTGACGCCGTCTTCGAGTGCACGCTGGACATGATCAAC
AAGAACTTTGAAGATTTCCCACAGCACAGACTTAGTTTCTACGAGCTACT
GCAGGCGGTCAATGCGCACTGCTTTAAGGCGTTCCTTAATATACCGCCGG
CTCAGTTCAAACTGGTCTTCGACTCGGTGGTGTGGGCATTCAAGCATACC
ATGCGGAATGTGGCCGACATGGGATTGAATATCCTATTTAAGATGCTTCA
AAACTTAGATCAGCATCCCGGTGCGGCGCAGAGCTTCTATCAGACGTACT
TTACAGATATTCTAATGCAGATATTTTCGGTGGTCACTGACACCTCACAC
ACGGCCGGGTTGCCCAATCATGCCATCATTCTGGCGTACATGTTCTCACT
GGTGGAGAACAGGAAGATTACGGTGAACCTGGGTCCGATTCCGGATAATA
TGATATTCATACAGGAATATGTCGCGTCGCTGCTGAAATCGGCATTTACC
CATCTGTCCGATAATCAGGTCAAAGTCTTTGTCACTGGCTTATTCAATTT
AGACGAGAATGTGCAAGCATTTAAGGAGCATTTGAGAGATTTTCTCATAC
AGATTCGCGAGGCCACCGGCGAGGACGATTCCGATCTGTACTTGGAAGAG
CGTGAAGCGGCTCTGGCCGAGGAGCAGTCAAATAAACATCAGATGCAGCG
TAATATTCCAGGAATGTTGAATCCGCACGAGTTGCCCGAGGATATGCAGG
ACGAATAGAAGCTTTCTAGACCAT

BS10835.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:42
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3192 CG13387-PB 1..3192 17..3208 15960 100 Plus
emb-RA 3192 CG13387-PA 1..3192 17..3208 15960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:44
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 372..3564 17..3209 15965 100 Plus
emb-RA 4492 CG13387-RA 372..3564 17..3209 15965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8404288..8405782 17..1511 7475 100 Plus
2L 23513712 2L 8406374..8406855 1878..2359 2410 100 Plus
2L 23513712 2L 8405915..8406288 1508..1881 1870 100 Plus
2L 23513712 2L 8407316..8407689 2686..3059 1855 99.7 Plus
2L 23513712 2L 8406922..8407256 2358..2692 1675 100 Plus
2L 23513712 2L 8407775..8407925 3059..3209 755 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:14:41 has no hits.

BS10835.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:21 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 370..3561 17..3208 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:09:35 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 372..3563 17..3208 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:15 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 370..3561 17..3208 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:11 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
emb-RA 372..3563 17..3208 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:11 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8406924..8407256 2360..2692 100 -> Plus
2L 8404288..8405779 17..1508 100 -> Plus
2L 8405916..8406286 1509..1879 100 -> Plus
2L 8406376..8406855 1880..2359 100 -> Plus
2L 8407323..8407688 2693..3058 100 -> Plus
2L 8407775..8407924 3059..3208 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:09:35 Download gff for BS10835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8404288..8405779 17..1508 100 -> Plus
arm_2L 8405916..8406286 1509..1879 100 -> Plus
arm_2L 8406376..8406855 1880..2359 100 -> Plus
arm_2L 8406924..8407256 2360..2692 100 -> Plus
arm_2L 8407323..8407688 2693..3058 100 -> Plus
arm_2L 8407775..8407924 3059..3208 100   Plus

BS10835.3prime Sequence

940 bp (848 high quality bases) assembled on 2006-04-19

> BS10835.3prime
ATGGTCTAGAAAGCTTCTATTCGTCCTGCATATCCTCGGGCAACTCGTGC
GGATTCAACATTCCTGGAATATTACGCTGCATCTGATGTTTATTTGACTG
CTCCTCGGCCAGAGCCGCTTCACGCTCTTCCAAGTACAGATCGGAATCGT
CCTCGCCGGTGGCCTCGCGAATCTGTATGAGAAAATCTCTCAAATGCTCC
TTAAATGCTTGCACATTCTCGTCTAAATTGAATAAGCCAGTGACAAAGAC
TTTGACCTGATTATCGGACAGATGGGTAAATGCCGATTTCAGCAGCGACG
CGACATATTCCTGTATGAATATCATATTATCCGGAATCGGACCCAGGTTC
ACCGTAATCTTCCTGTTCTCCACCAGTGAGAACATGTACGCCAGAATGAT
GGCATGATTGGGCAACCCGGCCGTGTGTGAGGTGTCAGTGACCACCGAAA
ATATCTGCATTAGAATATCTGTAAAGTACGTCTGATAGAAGCTCTGCGCC
GCACCGGGATGCTGATCTAAGTTTTGAAGCATCTTAAATAGGATATTCAA
TCCCATGTCGGCCACATTCCGCATGGTATGCTTGAATGCCCACACCACCG
AGTCGAAGACCAGTTTGAACTGAGCCGGCGGTATATTAAGGAACGCCTTA
AAGCAGTGCGCATTGACCGCCTGCAGTAGCTCGTAGAAACTAAGTCTGTG
CTGTGGGAAATCTTCAAAGTTCTTGTTGATCATGTCCAGCGTGCACTCGA
AGACGGCGTCAAATATTTTTGGTACTTCATTTGTGATATGCTGACGCAGT
TTATGCACAATGATTGCCATCGCACTTAAAACCTTGGGCTCCCGTGCCGA
TGGAACTTTGCAGCGCTGATAATCTAGCAGTATAGCGTCCAGCAAAGGCG
GTATGAAATTGTCCATCACCAACTGATTGTCGGTTGGACG

BS10835.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13387-PA 3192 emb-RA 2277..3192 932..17 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:37
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 2643..3564 938..16 4590 99.9 Minus
emb-RA 4492 CG13387-RA 2643..3564 938..16 4590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8407316..8407689 539..166 1855 99.7 Minus
2L 23513712 2L 8406922..8407256 867..533 1675 100 Minus
2L 23513712 2L 8407775..8407925 166..16 755 100 Minus
2L 23513712 2L 8406789..8406855 932..866 335 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:41:35 has no hits.

BS10835.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:11 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-PA 2269..3192 17..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:09 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13387-PA 2269..3192 17..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:21:40 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 2640..3564 16..940 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:13 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 2640..3564 16..940 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:13 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8407323..8407688 167..532 100 -> Minus
2L 8407775..8407925 16..166 100   Minus
2L 8406781..8406855 866..940 97 -> Minus
2L 8406924..8407256 533..865 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:21:40 Download gff for BS10835.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8406781..8406855 866..940 97 -> Minus
arm_2L 8406924..8407256 533..865 100 -> Minus
arm_2L 8407323..8407688 167..532 100 -> Minus
arm_2L 8407775..8407925 16..166 100   Minus

BS10835.5prime Sequence

943 bp (864 high quality bases) assembled on 2006-04-19

> BS10835.5prime
GAAGTTATCAGTCGACATGGCGACAATGTTGACATCGGACGAGGCGGGCA
AGCTGCTCGACTTCTCCCAGAAGCTGGACATTAATCTGCTGGACAAGATC
GTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTCTAGCCCAGAG
CATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACA
GCATATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAA
ATCCTCGAGGAGGTCATCAAAACGCGCTGGAAGGTCCTGCCGCGCAACCA
GTGCGAGGGAATCAAGAAGTATGTGGTCAGTCTTATCATCAAGACCTCGT
CGGATCCCATTGTTATGGAGCAGAACAAAGTGTATCTGAATAAGCTAAAC
ATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACTGGGAGAC
ATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCA
TGAACAACATGGTAATCCTGAAGAACCTTAGTGAGGAGGTGTTCGACTTT
TCGCAGGGTCAGATCACGCAGACTAAGGCCAAGCACCTGAAAGACACCAT
GTGCTCGGAGTTCTCTCAGATCTTTACACTATGCTCCTTCGTGCTGGAGA
ACTCGATGAATGCCGCCCTAATCCATGTCACGCTGGAGACTCTGCTGAGG
TTCCTTAACTGGATACCGCTGGGCTACATCTTTGAAACGCAGCAAATTGA
AACGCTGATATTCAAATTCCTTAGCGTACCCATGTTCCGCAATGTGACCC
TGAAGTGTCTGTCCGAGATCGCCGGCCTGACTGCGGCAAACTACGACGAG
AATTTCGCGACGCTCTTCAGGACACGATGGTTCAGTTGGAACAGATAGTC
GGGCAGATTATGAACATGAACCATGTGTTTAAGCATGGGTTCC

BS10835.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 18:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13387-PA 3192 emb-RA 1..853 17..869 4265 100 Plus
CG13387-PA 3192 emb-RA 854..923 869..938 300 97.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
emb-RB 3919 CG13387-RB 372..1294 17..938 4560 99.7 Plus
emb-RA 4492 CG13387-RA 372..1294 17..938 4560 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8404288..8405210 17..938 4535 99.7 Plus
Blast to na_te.dros performed on 2015-02-04 04:52:31 has no hits.

BS10835.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 10:51:12 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 12:16:11 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13387-PA 1..927 17..943 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 07:05:51 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 368..1298 10..943 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:39:40 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
emb-RA 368..1298 10..943 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:39:40 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8404284..8405214 10..943 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 07:05:51 Download gff for BS10835.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8404284..8405214 10..943 99   Plus

BS10835.pep Sequence

Translation from 16 to 3207

> BS10835.pep
MATMLTSDEAGKLLDFSQKLDINLLDKIVEVVYTAQGEQLRLAQSILTTL
KEHPEAWTRVDSILEYSQNQRTKFYALQILEEVIKTRWKVLPRNQCEGIK
KYVVSLIIKTSSDPIVMEQNKVYLNKLNMILVHILKREWPRNWETFISDI
VGASKTNESLCMNNMVILKNLSEEVFDFSQGQITQTKAKHLKDTMCSEFS
QIFTLCSFVLENSMNAALIHVTLETLLRFLNWIPLGYIFETQQIETLIFK
FLSVPMFRNVTLKCLSEIAGLTAANYDENFATLFKDTMVQLEQIVGQNMN
MNHVFKHGSDTEQELVLNLAMFLCTFLKEHGKLVEDAKYVDYLNQALMYL
VMISEVEDVEVFKICLEYWNSLVEDLYNSEFFHPTLESTKRQQVYPRRRF
YAPILSKVRFIMISRMAKPEEVLVVENENGEVVREFMKDTNSINLYKNMR
ETLVFLTHLDSVDTDRIMTLKLLNQVNGSEFSWKNLNTLCWAIGSISGAF
CEEDEKRFLVTVIKDLLGLCEQKKGKDNKAIIASNIMYVVGQYPRFLRAH
WKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAIKCRRYFVTIQPNEAC
TFIDEILTTMSSIICDLQPQQVHTFYEAVGYMISAQVDQVQQDVLIERYM
QLPNQVWDDIISRASKNVDFLKNMTAVKQLGSILKTNVAACKALGHAYVI
QLGRIYLDMLNVYKITSENIIQAIEVNGVNVNNQPLIKTMHVVKKETLNL
ISEWVSRSNDNQLVMDNFIPPLLDAILLDYQRCKVPSAREPKVLSAMAII
VHKLRQHITNEVPKIFDAVFECTLDMINKNFEDFPQHRLSFYELLQAVNA
HCFKAFLNIPPAQFKLVFDSVVWAFKHTMRNVADMGLNILFKMLQNLDQH
PGAAQSFYQTYFTDILMQIFSVVTDTSHTAGLPNHAIILAYMFSLVENRK
ITVNLGPIPDNMIFIQEYVASLLKSAFTHLSDNQVKVFVTGLFNLDENVQ
AFKEHLRDFLIQIREATGEDDSDLYLEEREAALAEEQSNKHQMQRNIPGM
LNPHELPEDMQDE*

BS10835.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
emb-PB 1063 CG13387-PB 1..1063 1..1063 5481 100 Plus
emb-PA 1063 CG13387-PA 1..1063 1..1063 5481 100 Plus